diff -Nru sigma-align-1.1.3/debian/changelog sigma-align-1.1.3/debian/changelog --- sigma-align-1.1.3/debian/changelog 2012-01-04 15:37:22.000000000 +0000 +++ sigma-align-1.1.3/debian/changelog 2011-12-24 15:22:59.000000000 +0000 @@ -1,3 +1,30 @@ +sigma-align (1.1.3-3) unstable; urgency=low + + * Fix bug in long description + Closes: #652922 + + -- Andreas Tille Sat, 24 Dec 2011 16:22:30 +0100 + +sigma-align (1.1.3-2) unstable; urgency=low + + [ Charles Plessy ] + * Documented information in ‘debian/upstream-metadata.yaml’. + * Converted debian/copyright to machine-readable format version 1.0. + + [Steffen Möller] + * Split long description in two (Closes: #644663) + + [ Andreas Tille ] + * debian/control: + - Fixed Vcs fields + - Standards-Version incremented to reflect compliance with Policy 3.9.2. + - Long description less than 80 characters per line + * Source format 3.0 (quilt) + * debian/rules: dh instead of cdbs + * Debhelper 8 (control+compat) + + -- Andreas Tille Fri, 16 Dec 2011 15:45:30 +0100 + sigma-align (1.1.3-1) unstable; urgency=low * New upstream release. diff -Nru sigma-align-1.1.3/debian/compat sigma-align-1.1.3/debian/compat --- sigma-align-1.1.3/debian/compat 2012-01-04 15:37:22.000000000 +0000 +++ sigma-align-1.1.3/debian/compat 2011-12-16 14:46:16.000000000 +0000 @@ -1 +1 @@ -7 +8 diff -Nru sigma-align-1.1.3/debian/control sigma-align-1.1.3/debian/control --- sigma-align-1.1.3/debian/control 2012-01-04 15:37:22.000000000 +0000 +++ sigma-align-1.1.3/debian/control 2011-12-24 15:24:17.000000000 +0000 @@ -1,24 +1,27 @@ Source: sigma-align Section: science Priority: optional -Maintainer: Debian-Med Packaging Team +Maintainer: Debian Med Packaging Team DM-Upload-Allowed: yes Uploaders: Charles Plessy , Andreas Tille -Build-Depends: autotools-dev, cdbs, debhelper (>= 7), libglib2.0-dev -Standards-Version: 3.8.1 -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/sigma-align/trunk/?rev=0&sc=0 -Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/sigma-align/trunk/ +Build-Depends: autotools-dev, debhelper (>= 8), libglib2.0-dev +Standards-Version: 3.9.2 +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/sigma-align/trunk/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/sigma-align/trunk/ Homepage: http://www.imsc.res.in/~rsidd/sigma/ Package: sigma-align Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} Description: Simple greedy multiple alignment of non-coding DNA sequences - Sigma (“Simple greedy multiple alignment”) is an alignment program with a - new algorithm and scoring scheme designed specifically for non-coding DNA - sequence. It uses a strategy of seeking the best possible gapless local - alignments, at each step making the best possible alignment consistent with - existing alignments, and scores the significance of the alignment based on - the lengths of the aligned fragments and a background model which may be - supplied or estimated from an auxiliary file of intergenic DNA. + Sigma (“Simple greedy multiple alignment”) is an alignment program. It's + algorithm and scoring scheme are designed specifically for non-coding + DNA sequence. + . + It uses a strategy of seeking the best possible gapless local + alignments. This happens at each step making the best possible alignment + consistent with existing alignments. It scores the significance of the + alignment based on the lengths of the aligned fragments and a background + model. These may be supplied or estimated from an auxiliary file of + intergenic DNA. diff -Nru sigma-align-1.1.3/debian/copyright sigma-align-1.1.3/debian/copyright --- sigma-align-1.1.3/debian/copyright 2012-01-04 15:37:22.000000000 +0000 +++ sigma-align-1.1.3/debian/copyright 2011-10-14 19:33:35.000000000 +0000 @@ -1,22 +1,22 @@ -Name: Sigma +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Source: http://www.imsc.res.in/~rsidd/sigma/source/sigma-1.1.3.tar.gz -Contact: Rahul Siddharthan +Files: * Copyright: Rahul Siddharthan, 2006-2009 License: GPL-2+ - This package is free software; you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation; either version 2 of the License, or - (at your option) any later version. + This package is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. . - This package is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. . - You should have received a copy of the GNU General Public License - along with this package; if not, write to the Free Software - Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA + You should have received a copy of the GNU General Public License + along with this package; if not, write to the Free Software + Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA Comment: On Debian systems, the complete text of the GNU General Public License version 2 can be found in `/usr/share/common-licenses/GPL-2'. diff -Nru sigma-align-1.1.3/debian/rules sigma-align-1.1.3/debian/rules --- sigma-align-1.1.3/debian/rules 2012-01-04 15:37:22.000000000 +0000 +++ sigma-align-1.1.3/debian/rules 2011-12-16 14:47:09.000000000 +0000 @@ -1,4 +1,4 @@ #!/usr/bin/make -f -include /usr/share/cdbs/1/class/autotools.mk -include /usr/share/cdbs/1/rules/debhelper.mk +%: + dh $@ --with autotools_dev diff -Nru sigma-align-1.1.3/debian/source/format sigma-align-1.1.3/debian/source/format --- sigma-align-1.1.3/debian/source/format 1970-01-01 00:00:00.000000000 +0000 +++ sigma-align-1.1.3/debian/source/format 2012-01-04 15:37:23.000000000 +0000 @@ -0,0 +1 @@ +3.0 (quilt) diff -Nru sigma-align-1.1.3/debian/upstream-metadata.yaml sigma-align-1.1.3/debian/upstream-metadata.yaml --- sigma-align-1.1.3/debian/upstream-metadata.yaml 1970-01-01 00:00:00.000000000 +0000 +++ sigma-align-1.1.3/debian/upstream-metadata.yaml 2010-01-23 07:18:26.000000000 +0000 @@ -0,0 +1,16 @@ +Contact: Rahul Siddharthan +DOI: 10.1186/1471-2105-7-143 +Homepage: http://www.imsc.res.in/~rsidd/sigma/ +PMID: 16542424 +Name: Sigma +Reference: + AUTHOR: Siddharthan, Rahul + TITLE: Sigma: multiple alignment of weakly-conserved non-coding DNA sequence + JOURNAL: BMC Bioinformatics + VOLUME: 7 + YEAR: 2006 + NUMBER: 1 + PAGES: 143 + URL: http://www.biomedcentral.com/1471-2105/7/143 + ISSN: 1471-2105 +Watch: http://www.imsc.res.in/~rsidd/sigma/ source/sigma-(.*)\.tar\.gz