Web-based application and standalone R package for the analysis of aCGH data. Eight algorithms (parallelized with MPI) are included: CBS, GLAD, HMM, BioHMM, CGHseg, ACE, SWARRY, wavelets-based smoothing. Output includes clickable figures with links to additional information. Fault-tolerance and checkpointing mechanisms included.
The R-package is a stand-alone R package (its full use requires Python installed). Installing the web application is not trivial (because of handling the CGI together with MPI); please look at the "Asterias Common" product.
ADaCGH is described in the paper: