ADaCGH: analysis of aCGH data

Registered 2006-12-21 by Ramon Diaz-Uriarte

Web-based application and standalone R package for the analysis of aCGH data. Eight algorithms (parallelized with MPI) are included: CBS, GLAD, HMM, BioHMM, CGHseg, ACE, SWARRY, wavelets-based smoothing. Output includes clickable figures with links to additional information. Fault-tolerance and checkpointing mechanisms included.

The R-package is a stand-alone R package (its full use requires Python installed). Installing the web application is not trivial (because of handling the CGI together with MPI); please look at the "Asterias Common" product.

ADaCGH is described in the paper:

http://www.plosone.org/article/fetchArticle.action?articleURI=info%3Adoi%2F10.1371%2Fjournal.pone.0000737

Project information

Part of:
Asterias Project
Maintainer:
Ramon Diaz-Uriarte
Driver:
Not yet selected
Development focus:

trunk series 

lp:adacgh 
Browse the code

Programming Languages:
R, Python
Licences:
GNU Affero GPL v3, GNU GPL v2, GNU GPL v3
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ADaCGH trunk series is the current focus of development

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