Registered 2013-03-21 by German Tischler

Tools for processing bam files

The biobambam package contains some tools for processing BAM files. In particular this includes duplicate marking, sorting, conversion to FastQ and adapter detection/clipping. The package depends on the libmaus package. It can be installed in Ubuntu Trusty and Utopic using

sudo add-apt-repository ppa:gt1/libmaus
sudo add-apt-repository ppa:gt1/biobambam
sudo apt-get update
sudo apt-get install libmaus-dev biobambam

For Ubuntu Precise it in addition requires the package staden-io-lib-current and can be installed using

sudo add-apt-repository ppa:gt1/staden-io-lib-current
sudo add-apt-repository ppa:gt1/libmaus
sudo add-apt-repository ppa:gt1/biobambam
sudo apt-get update
sudo apt-get install libmaus-dev biobambam

Project information

Maintainer:
German Tischler
Driver:
German Tischler
Licence:
GNU GPL v3

RDF metadata

View full history Series and milestones

trunk series is the current focus of development.

All code Code

Version control system:
Bazaar

Get Involved

  • warning
    Report a bug
  • warning
    Ask a question
  • warning
    Help translate

Downloads

biobambam does not have any download files registered with Launchpad.