igv shell wrapper missing class dependency
Affects | Status | Importance | Assigned to | Milestone | |
---|---|---|---|---|---|
igv (Ubuntu) |
Fix Released
|
Undecided
|
Unassigned |
Bug Description
This is a packaging issue; the igv shell script classpath is missing /usr/share/
The result is that when trying to create a .genome file from a fasta, igv crashes with the following error:
INFO [2016-07-12 14:20:48,781] [CommandListene
ERROR [2016-07-12 14:21:22,493] [DefaultExcepti
java.lang.
at org.broad.
at org.broad.
at org.broad.
at org.broad.
at org.broad.
at org.broad.
I have verified that adding the missing class lib to the shell script fixes the problem.
ProblemType: Bug
DistroRelease: Ubuntu 16.04
Package: igv 2.3.68+dfsg-1
ProcVersionSign
Uname: Linux 4.4.0-28-generic x86_64
NonfreeKernelMo
ApportVersion: 2.20.1-0ubuntu2.1
Architecture: amd64
CurrentDesktop: XFCE
Date: Tue Jul 12 15:02:16 2016
InstallationDate: Installed on 2015-09-29 (287 days ago)
InstallationMedia: Xubuntu 15.04 "Vivid Vervet" - Release amd64 (20150422.1)
PackageArchitec
SourcePackage: igv
UpgradeStatus: Upgraded to xenial on 2016-05-26 (46 days ago)
summary: |
- igv missing class dependency + igv shell wrapper missing class dependency |
This bug was fixed in the package igv - 2.4.14+dfsg-2
---------------
igv (2.4.14+dfsg-2) unstable; urgency=medium
[ Olivier Sallou ]
fix for FTBS openjdk 11, Closes: #895765
- thanks to Markus Koschany <email address hidden>
-- Olivier Sallou <email address hidden> Tue, 23 Oct 2018 14:55:18 +0200