Launchpad.net

bos02-arm64-022

bos02-arm64-022 builds arm64, armel, and armhf binaries and is owned by Colin Watson.

View full history Current status

26764920 [building] Building arm64 build of r-bioc-snpstats 1.38.0+dfsg-1build1 in ubuntu groovy PROPOSED

Started 3 minutes, 9.4 seconds ago.

Buildlog

, "Subject%d", i+1);
      | ^~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
                 from /usr/share/R/include/R.h:56,
                 from testBig.c:1:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 9 and 18 bytes into a destination of size 16
   36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 | __bos (__s), __fmt, __va_arg_pack ());
      | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-vCgIlD/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c uncertain.c -o uncertain.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o snpStats.so Runcertain.o bind.o count_gt.o covwin.o force_hom.o fst.o glm_test.o glm_test_R.o hash_index.o hphase.o imputation.o in.o input.o invert.o ipf.o ld.o misc.o mla.o mvphenotype.o outdata.o plink.o read_uncertain.o readped.o single_snp_tests.o snp_summary.o snpmpy.o solve_cubic.o structure.o subset.o switch.o tdt.o testBig.o uncertain.o -lz -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-snpstats-1.38.0+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-snpstats-1.38.0+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-snpstats-1.38.0+dfsg/src'
installing to /<<BUILDDIR>>/r-bioc-snpstats-1.38.0+dfsg/debian/r-bioc-snpstats/usr/lib/R/site-library/00LOCK-r-bioc-snpstats-1.38.0+dfsg/00new/snpStats/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location

Builder information

Architectures:
arm64 armel armhf (virtual)
Location:
http://bos02-arm64-022.vbuilder.bos02.scalingstack:8221
Owner:
Colin Watson
Mode:
This builder is in auto-mode and accepting jobs from the auto-build system.
Version:
188