CelleratorNetwork-example.nb

Example Cellzilla2D notebook.

GPL License applies.
See http://xlr8r.info and http://cellzilla.info for further details.

In[1]:=

CelleratorNetwork-example_1.gif

CelleratorNetwork-example_2.gif

In[2]:=

CelleratorNetwork-example_3.gif

CelleratorNetwork-example_4.gif

Generate 50 random vertices to use a Voronoi Centers

In[3]:=

CelleratorNetwork-example_5.gif

Use the Voronoi Centers to generate a tissue with 5 cells using the Bounded-Cell-Voronoi algorithm

In[5]:=

CelleratorNetwork-example_6.gif

Show the tissue and the centers

In[6]:=

CelleratorNetwork-example_7.gif

Out[6]=

CelleratorNetwork-example_8.gif

Define the Cellerator Network in a Single Cell

In[7]:=

CelleratorNetwork-example_9.gif

Generate the Reactions in the big network

In[11]:=

CelleratorNetwork-example_10.gif

CelleratorNetwork-example_11.gif

CelleratorNetwork-example_12.gif

CelleratorNetwork-example_13.gif

CelleratorNetwork-example_14.gif

CelleratorNetwork-example_15.gif

In[12]:=

CelleratorNetwork-example_16.gif

Out[12]=

CelleratorNetwork-example_17.gif

Define some random initial conditions

In[13]:=

CelleratorNetwork-example_18.gif

Out[14]=

CelleratorNetwork-example_19.gif

Define the Paraemters and run a single simulation

In[15]:=

CelleratorNetwork-example_20.gif

In[16]:=

CelleratorNetwork-example_21.gif

Plot the results

In[17]:=

CelleratorNetwork-example_22.gif

Out[17]=

CelleratorNetwork-example_23.gif

Spikey Created with Wolfram Mathematica 8.0