diff -Nru abacas-1.3.1/debian/changelog abacas-1.3.1/debian/changelog
--- abacas-1.3.1/debian/changelog	2011-03-21 15:22:03.000000000 +0000
+++ abacas-1.3.1/debian/changelog	2013-10-25 14:04:22.000000000 +0000
@@ -1,3 +1,14 @@
+abacas (1.3.1-2) unstable; urgency=low
+
+  * debian/upstream: Added citation information
+  * debian/control:
+     - cme fix dpkg-control
+     - debhelper 9
+     - canocoal Vcs URLs
+  * debian/copyright: DEP5
+
+ -- Andreas Tille <tille@debian.org>  Fri, 25 Oct 2013 15:59:00 +0200
+
 abacas (1.3.1-1) unstable; urgency=low
 
   * Initial release (Closes: #619100)
diff -Nru abacas-1.3.1/debian/compat abacas-1.3.1/debian/compat
--- abacas-1.3.1/debian/compat	2011-03-18 15:40:30.000000000 +0000
+++ abacas-1.3.1/debian/compat	2013-10-25 14:00:01.000000000 +0000
@@ -1 +1 @@
-8
+9
diff -Nru abacas-1.3.1/debian/control abacas-1.3.1/debian/control
--- abacas-1.3.1/debian/control	2011-03-18 15:40:41.000000000 +0000
+++ abacas-1.3.1/debian/control	2013-10-25 14:00:43.000000000 +0000
@@ -1,18 +1,19 @@
 Source: abacas
-Section: science
-Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
-DM-Upload-Allowed: yes
 Uploaders: Andreas Tille <tille@debian.org>
-Build-Depends: debhelper (>= 8)
-Standards-Version: 3.9.1
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.4
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/abacas/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/abacas/trunk/
 Homepage: http://abacas.sourceforge.net/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/abacas/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/abacas/trunk/
 
 Package: abacas
 Architecture: all
-Depends: ${perl:Depends}, ${misc:Depends}, mummer
+Depends: ${perl:Depends},
+         ${misc:Depends},
+         mummer
 Description: Algorithm Based Automatic Contiguation of Assembled Sequences
  ABACAS is intended to rapidly contiguate (align, order, orientate),
  visualize and design primers to close gaps on shotgun assembled contigs
diff -Nru abacas-1.3.1/debian/copyright abacas-1.3.1/debian/copyright
--- abacas-1.3.1/debian/copyright	2011-03-21 09:22:46.000000000 +0000
+++ abacas-1.3.1/debian/copyright	2013-10-25 14:02:32.000000000 +0000
@@ -1,28 +1,31 @@
-Format: http://dep.debian.net/deps/dep5/
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: Abacas
 Upstream-Contact: Wellcome Trust Sanger Institute <sa4@sanger.ac.uk>
 Source:  http://sourceforge.net/projects/abacas/files/
 
+Files: *
 Copyright: © 2008-10 Genome Research Limited. All Rights Reserved.
 License: GPL-2+
-	
+
+Files: debian/*
+Copyright: © 2011 Andreas Tille <tille@debian.org>
+License: GPL-2+
+
+License: GPL-2+
 	Abacas is free software; you can redistribute it and/or modify
 	it under the terms of the GNU General Public License as published by
 	the Free Software Foundation; either version 2 of the License, or
 	(at your option) any later version.
-	
+	.
 	Velvet is distributed in the hope that it will be useful,
 	but WITHOUT ANY WARRANTY; without even the implied warranty of
 	MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 	GNU General Public License for more details.
-	
+	.
 	You should have received a copy of the GNU General Public License
 	along with Velvet; if not, write to the Free Software
 	Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
+ .
+ On Debian systems, the complete text of the GNU General Public
+ License version 2 can be found in ‘/usr/share/common-licenses/GPL-2’.
 
-On Debian systems, the complete text of the GNU General Public
-License version 2 can be found in ‘/usr/share/common-licenses/GPL-2’.
-
-Files: debian/*
-Copyright: © 2011 Andreas Tille <tille@debian.org>
-License: Same as abacas
diff -Nru abacas-1.3.1/debian/upstream abacas-1.3.1/debian/upstream
--- abacas-1.3.1/debian/upstream	1970-01-01 00:00:00.000000000 +0000
+++ abacas-1.3.1/debian/upstream	2013-09-12 08:59:54.000000000 +0000
@@ -0,0 +1,12 @@
+Reference:
+  Author: Samuel Assefa and Thomas M. Keane and Thomas D. Otto and Chris Newbold and Matthew Berriman
+  Title: "ABACAS: algorithm-based automatic contiguation of assembled sequences"
+  Journal: Bioinformatics
+  Year: 2009
+  Volume: 25
+  Number: 15
+  Pages: 1968-1969
+  DOI: 10.1093/bioinformatics/btp347
+  PMID: 19497936
+  URL: http://bioinformatics.oxfordjournals.org/content/25/15/1968
+  eprint: http://bioinformatics.oxfordjournals.org/content/25/15/1968.full.pdf+html