Changelog
debian-med (1.99) unstable; urgency=low
* debian/control.stub:
- Build-Depends: blends-dev (>= 0.6.92) to get Section: metapackage entries
- cme fix dpkg-control
- debhelper 9
* d/source/format: 3.0 (native)
* start of automatic changelog entry *
* Changes in metapackage dependencies
-med-pharmacy
added:
Depends: r-cran-dosefinding
-med-tools
added:
Depends: cronometer, python-fitbit, python3-fitbitscraper, nut-nutrition
Suggests: goldencheetah
removed:
Suggests: cl-pubmed
-med-cloud
added:
Depends: bagpipe, fitgcp, fastqc, biomaj, sibsim4, biosquid, pdb2pqr,
soapdenovo, clonalframe, kissplice, conservation-code, mummer,
gasic, datamash, t-coffee, ampliconnoise, cassiopee, snap,
tabix, flexbar, zalign, parsinsert, smalt, melting,
r-cran-vegan, autodock-vina, cufflinks, mafft, dialign, glam2,
freecontact, probabel, mustang, amap-align, gromacs, anfo,
sigma-align, giira, blast2, bowtie, phyutility, poa, dialign-tx,
arden, qiime, squizz, theseus, gmap, autogrid, r-bioc-edger,
cd-hit, dnaclust, idba, probcons, discosnp, prodigal, cain,
sra-toolkit, clearcut, gff2ps, genometools, neobio, mrbayes,
pynast, sim4, bioperl, prank, perm, prime-phylo,
mira-assembler, bowtie2, vcftools, mapsembler2, r-cran-pvclust,
hmmer, cdbfasta, clustalw, wise, kalign, soapdenovo2, boxshade,
clustalo, python3-biopython, proda, abyss, primer3, grinder,
fastx-toolkit, rtax, minia, mlv-smile, concavity,
r-other-mott-happy.hbrem, ncbi-epcr, gff2aplot, macs, mothur,
hhsuite, fasttree, mipe, bamtools, aragorn, bioperl-run,
exonerate, jellyfish, aevol, circos, paraclu, python-biopython,
muscle, dssp
removed:
Depends: clustalw | clustalw-mpi, r-other-mott-happy, bagphenotype
-med-psychology
added:
Depends: python-pypsignifit
Suggests: python-visionegg
removed:
Depends: psignifit3
Suggests: visionegg
-med-bio
added:
Depends: bagpipe, minia, emmax, clearcut, metastudent, cassiopee,
freebayes, relion-gui, r-cran-vegan, uc-echo, spades, pdb2pqr,
probabel, relion-bin | relion-bin-mpi, mrs, acacia, staden,
snp-sites, r-bioc-rtracklayer, kissplice, giira, aragorn, rtax,
gasic, fitgcp, chimeraslayer, perm, prime-phylo,
velvetoptimiser, saint, crac, grabix, phyutility, r-bioc-gviz,
ray, spread-phy, r-other-mott-happy.hbrem, pycorrfit,
rate4site, varscan, mapsembler2, flexbar, trimmomatic,
blimps-utils, nast-ier, blat, bitseq, mach-haplotyper,
ngsqctoolkit, discosnp, emperor, dnaclust, unc-fish, idba,
r-cran-ape, openms, topp, parsinsert, aevol, fsa, biceps,
ipig, kclust, circos, strap-base, freecontact, wigeon, fastaq,
soapdenovo2, r-bioc-biostrings, seqan-apps, eigensoft,
prodigal, modeller, arden, paraclu, situs, pyscanfcs
Suggests: biomaj-watcher, mobyle-tutorials, r-cran-boolnet,
mobyle-programs
Ignore: mozilla-biofox
removed:
Depends: r-ape, sra-sdk, ray-denovoassembler, phy-spread | spread-phy,
fas, vegan, dotur, r-other-mott-happy, bagphenotype
Suggests: circos, pdb2pqr, seqan-apps, eigensoft, blimps-utils,
python-rdkit, mozilla-biofox
-med-his
added:
Depends: vista-foia
removed:
Depends: vista
-med-bio-ngs
added:
Depends: kissplice
removed:
Depends: ssaha2
-med-practice
added:
Suggests: libctapimkt1
removed:
Depends: freeicd
Suggests: libctapimkt0
-med-imaging-dev
added:
Depends: libedf-dev, libpapyrus3-dev, libmialm-dev, r-cran-rniftilib,
libvmtk-dev, libvtk-dicom0.4-dev,
libinsighttoolkit3-dev | libinsighttoolkit4-dev,
python-mia | python3-mia, octave-gdf, python-vmtk,
python-mvpa2, libvigraimpex-dev, libteem-dev, python-vigra,
libmia-2.2-dev, libmiaviewit-dev, python-mne
Suggests: libics-dev, python-tifffile, libvtkedge-dev
removed:
Depends: libmia-2.0-dev, python-mvpa, libteem1-dev,
libinsighttoolkit3-dev
-med-imaging
added:
Depends: mia-viewit, vtk-dicom-tools, pixelmed-apps, conquest-common,
teem-apps, gdf-tools, python-surfer, python-mvpa2,
python-dicom, python-nibabel
Suggests: conquest-mysql, trimage, conquest-dbase, openwalnut-qt4,
conquest-sqlite, python-pyxid, conquest-postgres
removed:
Depends: conquest-dicom-server, python-mvpa, pixelmed-java, python-nifti
Suggests: pysurfer, pyxid, openwalnut
-med-bio-phylogeny
added:
Depends: spread-phy
removed:
Depends: phy-spread | spread-phy
-med-bio-dev
added:
Depends: python-rdkit, libbambamc-dev, libgenome-1.3-dev,
libfreecontact-perl, libhts-dev,
libgenome-model-tools-music-perl, python-corepywrap, pyfai,
libsnp-sites1-dev, libgenome-perl, libfreecontact0-dev,
libssm-dev, python-biopython | python3-biopython, sbmltoolbox,
python-csb | python3-csb, python-htseq, python-freecontact,
libopenms-dev, librelion-dev
Suggests: r-bioc-iranges, r-bioc-variantannotation, r-bioc-bsgenome,
r-bioc-preprocesscore, r-bioc-shortread, r-bioc-affy,
python-biopython-sql | python3-biopython-sql,
python-biopython-doc, r-bioc-makecdfenv, libfreecontact-doc,
libgtextutils-dev, r-bioc-affyio, librostlab-doc,
r-bioc-hypergraph, r-bioc-biovizbase, r-bioc-genomeinfodb,
librostlab-blast-doc, r-bioc-graph, r-bioc-xvector,
r-bioc-genomicfeatures, r-bioc-annotationdbi, r-bioc-snpstats,
r-bioc-rsamtools, r-bioc-altcdfenvs, r-bioc-genomicranges,
r-bioc-genomicalignments, r-bioc-biomart
removed:
Depends: libqsearch-dev, iranges, libopenmm4-dev, librostlab-blast-doc,
libgenome-1.3-0-dev, biostrings, librostlab-doc,
python-biopython, python-librcsb-core-wrapper, octave-bioinfo
-med-epi
added:
Depends: ushahidi
-med-physics
added:
Depends: gdf-tools, biosig-tools
Suggests: python-biosig, octave-biosig, python-multipletau, libbiosig-dev
removed:
Depends: biosig
-- Andreas Tille <email address hidden> Thu, 23 Oct 2014 23:42:18 +0200
