Mesh.h File Reference

#include "Finley.h"
#include "NodeFile.h"
#include "ElementFile.h"
#include "TagMap.h"
#include "Util.h"
#include "paso/SystemMatrixPattern.h"
#include "escript/DataC.h"

Go to the source code of this file.

Classes

struct  Finley_Mesh
struct  Finley_Mesh_findMatchingFaces_center

Typedefs

typedef struct Finley_Mesh Finley_Mesh
typedef struct
Finley_Mesh_findMatchingFaces_center 
Finley_Mesh_findMatchingFaces_center

Functions

Finley_MeshFinley_Mesh_alloc (char *name, dim_t numDim, index_t order, index_t reduced_order, Paso_MPIInfo *mpi_info)
Finley_MeshFinley_Mesh_reference (Finley_Mesh *)
dim_t Finley_Mesh_getDim (Finley_Mesh *)
void Finley_Mesh_free (Finley_Mesh *)
void Finley_Mesh_addTagMap (Finley_Mesh *mesh_p, const char *name, index_t tag_key)
index_t Finley_Mesh_getTag (Finley_Mesh *mesh_p, const char *name)
bool_t Finley_Mesh_isValidTagName (Finley_Mesh *mesh_p, const char *name)
void Finley_Mesh_distributeByRankOfDOF (Finley_Mesh *in, dim_t *distribution)
Paso_SystemMatrixPatternFinley_getPattern (Finley_Mesh *mesh, bool_t reduce_row_order, bool_t reduce_col_order)
Paso_SystemMatrixPatternFinley_makePattern (Finley_Mesh *mesh, bool_t reduce_row_order, bool_t reduce_col_order)
void Finley_Mesh_write (Finley_Mesh *, char *)
void Finley_Mesh_dump (Finley_Mesh *in, char *fname)
void Finley_PrintMesh_Info (Finley_Mesh *, bool_t)
Finley_MeshFinley_Mesh_load (char *fname)
Finley_MeshFinley_Mesh_read (char *, index_t, index_t, bool_t)
Finley_MeshFinley_Mesh_read_MPI (char *, index_t, index_t, bool_t)
Finley_MeshFinley_Mesh_readGmsh (char *, index_t, index_t, index_t, bool_t)
void Finley_Mesh_setCoordinates (Finley_Mesh *, escriptDataC *)
void Finley_Mesh_setElements (Finley_Mesh *self, Finley_ElementFile *elements)
void Finley_Mesh_setFaceElements (Finley_Mesh *self, Finley_ElementFile *elements)
void Finley_Mesh_setContactElements (Finley_Mesh *self, Finley_ElementFile *elements)
void Finley_Mesh_setPoints (Finley_Mesh *self, Finley_ElementFile *elements)
void Finley_Mesh_optimizeDOFDistribution (Finley_Mesh *in, dim_t *distribution)
void Finley_Mesh_prepare (Finley_Mesh *in, bool_t optimize)
void Finley_Mesh_createColoring (Finley_Mesh *in, index_t *node_localDOF_map)
void Finley_Mesh_optimizeElementOrdering (Finley_Mesh *in)
void Finley_Mesh_resolveNodeIds (Finley_Mesh *)
void Finley_Mesh_createMappings (Finley_Mesh *in, index_t *dof_distribution, index_t *node_distribution)
void Finley_Mesh_createNodeFileMappings (Finley_Mesh *in, dim_t numReducedNodes, index_t *indexReducedNodes, index_t *dof_first_component, index_t *nodes_first_component)
void Finley_Mesh_markDOFsConnectedToRange (index_t *mask, index_t offset, index_t marker, index_t firstDOF, index_t lastDOF, Finley_Mesh *in, bool_t useLinear)
void Finley_Mesh_optimizeDOFLabeling (Finley_Mesh *, dim_t *)
Finley_MeshFinley_Mesh_merge (dim_t, Finley_Mesh **)
void Finley_Mesh_relableElementNodes (int *, int, Finley_Mesh *)
void Finley_Mesh_markNodes (int *, int, Finley_Mesh *, int)
void Finley_Mesh_glueFaces (Finley_Mesh *self, double safety_factor, double tolerance, bool_t)
void Finley_Mesh_joinFaces (Finley_Mesh *self, double safety_factor, double tolerance, bool_t)
int Finley_Mesh_findMatchingFaces_compar (const void *, const void *)
void Finley_Mesh_findMatchingFaces (Finley_NodeFile *, Finley_ElementFile *, double, double, int *, int *, int *, int *)
void Finley_Mesh_print (Finley_Mesh *in)
void Finley_Mesh_saveDX (const char *filename_p, Finley_Mesh *mesh_p, const dim_t num_data, char **names_p, escriptDataC **data_pp)
void Finley_Mesh_optimizeNodeLabeling (Finley_Mesh *mesh_p)
dim_t Finley_Mesh_FindMinDegreeNode (Paso_SystemMatrixPattern *pattern_p, index_t *available, index_t indicator)
index_t Finley_Mesh_getDegree (Paso_SystemMatrixPattern *pattern_p, index_t *label)
void Finley_Mesh_saveVTK (const char *filename_p, Finley_Mesh *mesh_p, const dim_t num_data, char **names_p, escriptDataC **data_pp, const char *metadata, const char *metadata_schema)
void Finley_Mesh_setTagsInUse (Finley_Mesh *in)
int Finley_Mesh_getStatus (Finley_Mesh *in)


Typedef Documentation

typedef struct Finley_Mesh Finley_Mesh


Function Documentation

Paso_SystemMatrixPattern* Finley_getPattern ( Finley_Mesh mesh,
bool_t  reduce_row_order,
bool_t  reduce_col_order 
)

Paso_SystemMatrixPattern* Finley_makePattern ( Finley_Mesh mesh,
bool_t  reduce_row_order,
bool_t  reduce_col_order 
)

void Finley_Mesh_addTagMap ( Finley_Mesh mesh_p,
const char *  name,
index_t  tag_key 
)

Finley_Mesh* Finley_Mesh_alloc ( char *  name,
dim_t  numDim,
index_t  order,
index_t  reduced_order,
Paso_MPIInfo mpi_info 
)

void Finley_Mesh_createColoring ( Finley_Mesh in,
index_t node_localDOF_map 
)

void Finley_Mesh_createMappings ( Finley_Mesh in,
index_t dof_distribution,
index_t node_distribution 
)

void Finley_Mesh_createNodeFileMappings ( Finley_Mesh in,
dim_t  numReducedNodes,
index_t indexReducedNodes,
index_t dof_first_component,
index_t nodes_first_component 
)

void Finley_Mesh_distributeByRankOfDOF ( Finley_Mesh in,
dim_t distribution 
)

void Finley_Mesh_dump ( Finley_Mesh in,
char *  fname 
)

void Finley_Mesh_findMatchingFaces ( Finley_NodeFile ,
Finley_ElementFile ,
double  ,
double  ,
int *  ,
int *  ,
int *  ,
int *   
)

int Finley_Mesh_findMatchingFaces_compar ( const void *  ,
const void *   
)

dim_t Finley_Mesh_FindMinDegreeNode ( Paso_SystemMatrixPattern pattern_p,
index_t available,
index_t  indicator 
)

void Finley_Mesh_free ( Finley_Mesh  ) 

index_t Finley_Mesh_getDegree ( Paso_SystemMatrixPattern pattern_p,
index_t label 
)

dim_t Finley_Mesh_getDim ( Finley_Mesh  ) 

int Finley_Mesh_getStatus ( Finley_Mesh in  ) 

index_t Finley_Mesh_getTag ( Finley_Mesh mesh_p,
const char *  name 
)

void Finley_Mesh_glueFaces ( Finley_Mesh self,
double  safety_factor,
double  tolerance,
bool_t   
)

bool_t Finley_Mesh_isValidTagName ( Finley_Mesh mesh_p,
const char *  name 
)

void Finley_Mesh_joinFaces ( Finley_Mesh self,
double  safety_factor,
double  tolerance,
bool_t   
)

Finley_Mesh* Finley_Mesh_load ( char *  fname  ) 

void Finley_Mesh_markDOFsConnectedToRange ( index_t mask,
index_t  offset,
index_t  marker,
index_t  firstDOF,
index_t  lastDOF,
Finley_Mesh in,
bool_t  useLinear 
)

void Finley_Mesh_markNodes ( int *  ,
int  ,
Finley_Mesh ,
int   
)

Finley_Mesh* Finley_Mesh_merge ( dim_t  ,
Finley_Mesh **   
)

void Finley_Mesh_optimizeDOFDistribution ( Finley_Mesh in,
dim_t distribution 
)

void Finley_Mesh_optimizeDOFLabeling ( Finley_Mesh ,
dim_t  
)

void Finley_Mesh_optimizeElementOrdering ( Finley_Mesh in  ) 

void Finley_Mesh_optimizeNodeLabeling ( Finley_Mesh mesh_p  ) 

void Finley_Mesh_prepare ( Finley_Mesh in,
bool_t  optimize 
)

void Finley_Mesh_print ( Finley_Mesh in  ) 

Finley_Mesh* Finley_Mesh_read ( char *  ,
index_t  ,
index_t  ,
bool_t   
)

Finley_Mesh* Finley_Mesh_read_MPI ( char *  ,
index_t  ,
index_t  ,
bool_t   
)

Finley_Mesh* Finley_Mesh_readGmsh ( char *  ,
index_t  ,
index_t  ,
index_t  ,
bool_t   
)

Finley_Mesh* Finley_Mesh_reference ( Finley_Mesh  ) 

void Finley_Mesh_relableElementNodes ( int *  ,
int  ,
Finley_Mesh  
)

void Finley_Mesh_resolveNodeIds ( Finley_Mesh  ) 

void Finley_Mesh_saveDX ( const char *  filename_p,
Finley_Mesh mesh_p,
const dim_t  num_data,
char **  names_p,
escriptDataC **  data_pp 
)

void Finley_Mesh_saveVTK ( const char *  filename_p,
Finley_Mesh mesh_p,
const dim_t  num_data,
char **  names_p,
escriptDataC **  data_pp,
const char *  metadata,
const char *  metadata_schema 
)

References __const, __STRCAT, allocSampleBuffer(), Paso_MPIInfo::comm, Finley_Mesh::ContactElements, Finley_NodeFile::Coordinates, Finley_Mesh::Elements, Finley_Mesh::FaceElements, FALSE, Finley_checkPtr(), FINLEY_CONTACT_ELEMENTS_1, FINLEY_CONTACT_ELEMENTS_2, Finley_ElementFile_getFirstElement(), Finley_ElementFile_getGlobalNumElements(), Finley_ElementFile_getMyNumElements(), FINLEY_ELEMENTS, FINLEY_FACE_ELEMENTS, Finley_NodeFile_borrowGlobalNodesIndex(), Finley_NodeFile_borrowGlobalReducedNodesIndex(), Finley_NodeFile_getFirstNode(), Finley_NodeFile_getFirstReducedNode(), Finley_NodeFile_getGlobalNumNodes(), Finley_NodeFile_getGlobalNumReducedNodes(), Finley_NodeFile_getLastNode(), Finley_NodeFile_getLastReducedNode(), FINLEY_NODES, Finley_noError(), FINLEY_POINTS, FINLEY_REDUCED_CONTACT_ELEMENTS_1, FINLEY_REDUCED_CONTACT_ELEMENTS_2, FINLEY_REDUCED_ELEMENTS, FINLEY_REDUCED_FACE_ELEMENTS, FINLEY_REDUCED_NODES, Finley_setError(), FINLEY_UNKNOWN, freeSampleBuffer(), Finley_RefElementInfo::geoNodes, getDataPointRank(), getDataPointShape(), getDataPointSize(), getFunctionSpaceType(), getNumDataPointsPerSample(), getSampleDataRO(), Hex20, Hex20Face, Hex20Face_Contact, Hex27, Hex8, Hex8Face, Hex8Face_Contact, INDEX2, INT_FORMAT, INT_NEWLINE_FORMAT, IO_ERROR, isEmpty(), isExpanded(), LEN_INT_FORMAT, LEN_TENSOR_FORMAT, LEN_TMP_BUFFER, LenErrorMsg_MAX, Line2, Line2_Contact, Line2Face, Line2Face_Contact, Line3, Line3_Contact, Line3Face, Line3Face_Contact, Finley_RefElementInfo::linearNodes, Finley_ElementFile::LinearReferenceElement, Finley_ElementFile::LinearReferenceElementReducedOrder, MAX, MIN, MPI_RANK0_WRITE_SHARED, MPI_WRITE_ORDERED, Finley_NodeFile::MPIInfo, Finley_RefElementInfo::Name, NCOMP_MAX, NEWLINE, nodeInQuadrant(), Finley_ElementFile::Nodes, Finley_Mesh::Nodes, Finley_NodeFile::nodesMapping, NoType, Finley_NodeFile::numDim, Finley_ElementFile::numElements, Finley_NodeFile::numNodes, Finley_ElementFile::numNodes, Finley_ElementFile::Owner, Paso_fileExists(), Paso_MPIInfo_noError(), Point1, Point1_Contact, Finley_Mesh::Points, Finley_RefElement::QuadNodes, Paso_MPIInfo::rank, Rec4, Rec4_Contact, Rec4Face, Rec4Face_Contact, Rec8, Rec8_Contact, Rec8Face, Rec8Face_Contact, Rec9, Finley_NodeFile::reducedNodesMapping, Finley_ElementFile::ReferenceElement, Finley_ElementFile::ReferenceElementReducedOrder, SCALAR_FORMAT, Paso_MPIInfo::size, SYSTEM_ERROR, Finley_NodeMapping::target, TENSOR_FORMAT, Tet10, Tet10Face, Tet10Face_Contact, Tet4, Tet4Face, Tet4Face_Contact, TMPMEMALLOC, TMPMEMFREE, Tri3, Tri3_Contact, Tri3Face, Tri3Face_Contact, Tri6, Tri6_Contact, Tri6Face, Tri6Face_Contact, TRUE, Finley_RefElement::Type, TYPE_ERROR, Finley_RefElementInfo::TypeId, VALUE_ERROR, VECTOR_FORMAT, VTK_HEXAHEDRON, VTK_LINE, VTK_QUAD, VTK_QUADRATIC_EDGE, VTK_QUADRATIC_HEXAHEDRON, VTK_QUADRATIC_QUAD, VTK_QUADRATIC_TETRA, VTK_QUADRATIC_TRIANGLE, VTK_TETRA, VTK_TRIANGLE, and VTK_VERTEX.

Referenced by finley::MeshAdapter::saveVTK().

void Finley_Mesh_setContactElements ( Finley_Mesh self,
Finley_ElementFile elements 
)

void Finley_Mesh_setCoordinates ( Finley_Mesh ,
escriptDataC  
)

void Finley_Mesh_setElements ( Finley_Mesh self,
Finley_ElementFile elements 
)

void Finley_Mesh_setFaceElements ( Finley_Mesh self,
Finley_ElementFile elements 
)

void Finley_Mesh_setPoints ( Finley_Mesh self,
Finley_ElementFile elements 
)

void Finley_Mesh_setTagsInUse ( Finley_Mesh in  ) 

void Finley_Mesh_write ( Finley_Mesh ,
char *   
)

void Finley_PrintMesh_Info ( Finley_Mesh ,
bool_t   
)


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