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RipleyElements.h
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2 /*****************************************************************************
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4 * Copyright (c) 2003-2014 by University of Queensland
5 * http://www.uq.edu.au
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8 * Licensed under the Open Software License version 3.0
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11 * Development until 2012 by Earth Systems Science Computational Center (ESSCC)
12 * Development 2012-2013 by School of Earth Sciences
13 * Development from 2014 by Centre for Geoscience Computing (GeoComp)
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15 *****************************************************************************/
16 
17 #ifndef __WEIPA_RIPLEYELEMENTS_H__
18 #define __WEIPA_RIPLEYELEMENTS_H__
19 
20 #include <weipa/ElementData.h>
21 #include <weipa/RipleyNodes.h>
22 
23 class DBfile;
24 
25 namespace ripley {
26 class RipleyDomain;
27 }
28 
29 
30 namespace weipa {
31 
33 typedef boost::shared_ptr<RipleyElements> RipleyElements_ptr;
34 
45 {
46 public:
47 
49  RipleyElements(const std::string& elementName, RipleyNodes_ptr nodes);
50 
53 
55  virtual ~RipleyElements() {}
56 
58  bool initFromRipley(const ripley::RipleyDomain* ripleyDomain, int fsType);
59 
62  void reorderGhostZones(int ownIndex);
63 
65  void removeGhostZones(int ownIndex);
66 
68  virtual void writeConnectivityVTK(std::ostream& os);
69 
75  bool writeToSilo(DBfile* dbfile, const std::string& siloPath,
76  const StringVec& labels, const StringVec& units,
77  bool writeMeshData);
78 
80  virtual StringVec getMeshNames() const;
81 
83  virtual StringVec getVarNames() const;
84 
86  virtual int getNumElements() const { return numElements; }
87 
89  virtual int getNodesPerElement() const { return nodesPerElement; }
90 
92  virtual int getGhostCount() const { return numGhostElements; }
93 
95  virtual ZoneType getType() const { return type; }
96 
98  virtual const IntVec& getNodeList() const { return nodes; }
99 
101  virtual const IntVec& getIDs() const { return ID; }
102 
106  virtual const IntVec& getVarDataByName(const std::string varName) const;
107 
109  virtual NodeData_ptr getNodes() const { return nodeMesh; }
110 
112  virtual ElementData_ptr getReducedElements() const { return ElementData_ptr(); }
113 
115  virtual const QuadMaskInfo& getQuadMask(int functionSpace) const { return quadMask; }
116 
120  virtual int getElementFactor() const { return 1; }
121 
122 private:
124  void buildMeshes();
125  IntVec prepareGhostIndices(int ownIndex);
126  void reorderArray(IntVec& v, const IntVec& idx, int elementsPerIndex);
127 
130  std::string name;
138 };
139 
140 } // namespace weipa
141 
142 #endif // __WEIPA_RIPLEYELEMENTS_H__
143 
virtual StringVec getVarNames() const
Returns a vector with the mesh variable names.
Definition: RipleyElements.cpp:355
int nodesPerElement
Definition: RipleyElements.h:133
virtual const IntVec & getNodeList() const
Returns a vector of the node IDs used by the elements.
Definition: RipleyElements.h:98
This struct holds a mask (0's and 1's) that indicates which quad nodes contribute to a sub-element wh...
Definition: ElementData.h:39
QuadMaskInfo quadMask
Definition: RipleyElements.h:137
boost::shared_ptr< RipleyNodes > RipleyNodes_ptr
Definition: RipleyNodes.h:30
void reorderArray(IntVec &v, const IntVec &idx, int elementsPerIndex)
Definition: RipleyElements.cpp:376
virtual const IntVec & getVarDataByName(const std::string varName) const
Returns an array of data values for the name provided.
Definition: RipleyElements.cpp:364
Stores and manipulates one type of domain elements.
Definition: ElementData.h:48
void removeGhostZones(int ownIndex)
Removes "ghost" elements.
Definition: RipleyElements.cpp:430
std::vector< std::string > StringVec
Definition: weipa.h:56
virtual int getNumElements() const
Returns the number of elements.
Definition: RipleyElements.h:86
void reorderGhostZones(int ownIndex)
Moves "ghost" elements (whose owner does not match ownIndex) and the corresponding data to the end of...
Definition: RipleyElements.cpp:417
virtual NodeData_ptr getNodes() const
Returns the node mesh instance used by the elements.
Definition: RipleyElements.h:109
std::vector< int > IntVec
Definition: weipa.h:55
ZoneType
Definition: ElementData.h:26
virtual int getNodesPerElement() const
Returns the number of nodes per element.
Definition: RipleyElements.h:89
IntVec prepareGhostIndices(int ownIndex)
Definition: RipleyElements.cpp:396
std::string name
Definition: RipleyElements.h:130
virtual int getElementFactor() const
If the original element type is not supported they are subdivided into N smaller elements (e...
Definition: RipleyElements.h:120
bool initFromRipley(const ripley::RipleyDomain *ripleyDomain, int fsType)
Initialises with data from a RipleyDomain instance.
Definition: RipleyElements.cpp:71
RipleyDomain extends the AbstractContinuousDomain interface for the Ripley library and is the base cl...
Definition: ripley/src/RipleyDomain.h:96
Stores and manipulates one type of ripley mesh elements (cells, faces).
Definition: RipleyElements.h:44
IntVec tag
Definition: RipleyElements.h:136
boost::shared_ptr< RipleyElements > RipleyElements_ptr
Definition: RipleyElements.h:32
virtual ZoneType getType() const
Returns the type of the elements.
Definition: RipleyElements.h:95
virtual ~RipleyElements()
Destructor.
Definition: RipleyElements.h:55
bool writeToSilo(DBfile *dbfile, const std::string &siloPath, const StringVec &labels, const StringVec &units, bool writeMeshData)
Writes element data into given directory in given Silo file.
Definition: RipleyElements.cpp:490
RipleyNodes_ptr originalMesh
Definition: RipleyElements.h:129
virtual void writeConnectivityVTK(std::ostream &os)
Writes connectivity data to a stream in VTK text format.
Definition: RipleyElements.cpp:461
RipleyElements()
Definition: RipleyElements.h:123
virtual StringVec getMeshNames() const
Returns the names of the meshes associated with the elements.
Definition: RipleyElements.cpp:347
ZoneType type
Definition: RipleyElements.h:134
virtual ElementData_ptr getReducedElements() const
Returns the reduced elements.
Definition: RipleyElements.h:112
int numElements
Definition: RipleyElements.h:131
void buildMeshes()
Definition: RipleyElements.cpp:444
IntVec nodes
Definition: RipleyElements.h:135
IntVec owner
Definition: RipleyElements.h:136
boost::shared_ptr< ElementData > ElementData_ptr
Definition: weipa.h:62
virtual int getGhostCount() const
Returns the number of "ghost" elements.
Definition: RipleyElements.h:92
virtual const IntVec & getIDs() const
Returns a vector of element IDs.
Definition: RipleyElements.h:101
boost::shared_ptr< NodeData > NodeData_ptr
Definition: weipa.h:64
virtual const QuadMaskInfo & getQuadMask(int functionSpace) const
Returns a QuadMaskInfo structure for given functionspace code.
Definition: RipleyElements.h:115
IntVec ID
Definition: RipleyElements.h:136
RipleyNodes_ptr nodeMesh
Definition: RipleyElements.h:128
int numGhostElements
Definition: RipleyElements.h:132