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Here is a list of all files with brief descriptions:
AbstractContinuousDomain.cpp
AbstractContinuousDomain.h
AbstractDomain.cpp
AbstractDomain.h
AbstractSystemMatrix.cpp
AbstractSystemMatrix.h
AbstractTransportProblem.cpp
AbstractTransportProblem.h
AMG.cpp
AMG_Interpolation.cpp
AMG_Prolongation.cpp
AMG_Restriction.cpp
AMG_Root.cpp
AML.cpp
dudley/src/Assemble.h
finley/src/Assemble.h
dudley/src/Assemble_addToSystemMatrix.cpp
finley/src/Assemble_addToSystemMatrix.cpp
dudley/src/Assemble_AverageElementData.cpp
finley/src/Assemble_AverageElementData.cpp
dudley/src/Assemble_CopyElementData.cpp
finley/src/Assemble_CopyElementData.cpp
dudley/src/Assemble_CopyNodalData.cpp
finley/src/Assemble_CopyNodalData.cpp
dudley/src/Assemble_getAssembleParameters.cpp
finley/src/Assemble_getAssembleParameters.cpp
dudley/src/Assemble_getSize.cpp
finley/src/Assemble_getSize.cpp
dudley/src/Assemble_gradient.cpp
finley/src/Assemble_gradient.cpp
dudley/src/Assemble_integrate.cpp
finley/src/Assemble_integrate.cpp
dudley/src/Assemble_interpolate.cpp
finley/src/Assemble_interpolate.cpp
Assemble_jacobeans.cpp
Assemble_jacobians.cpp
dudley/src/Assemble_LumpedSystem.cpp
finley/src/Assemble_LumpedSystem.cpp
dudley/src/Assemble_NodeCoordinates.cpp
finley/src/Assemble_NodeCoordinates.cpp
dudley/src/Assemble_PDE.cpp
finley/src/Assemble_PDE.cpp
dudley/src/Assemble_PDE_Points.cpp
finley/src/Assemble_PDE_Points.cpp
dudley/src/Assemble_PDE_Single2_1D.cpp
finley/src/Assemble_PDE_Single2_1D.cpp
dudley/src/Assemble_PDE_Single2_2D.cpp
finley/src/Assemble_PDE_Single2_2D.cpp
dudley/src/Assemble_PDE_Single2_3D.cpp
finley/src/Assemble_PDE_Single2_3D.cpp
Assemble_PDE_Single2_C.cpp
dudley/src/Assemble_PDE_System2_1D.cpp
finley/src/Assemble_PDE_System2_1D.cpp
dudley/src/Assemble_PDE_System2_2D.cpp
finley/src/Assemble_PDE_System2_2D.cpp
dudley/src/Assemble_PDE_System2_3D.cpp
finley/src/Assemble_PDE_System2_3D.cpp
Assemble_PDE_System2_C.cpp
dudley/src/Assemble_setNormal.cpp
finley/src/Assemble_setNormal.cpp
BasisFunctions.cpp
BasisFunctions.h
BiCGStab.cpp
BinaryOp.h
Describes binary operations performed on instances of DataAbstract
BlockOps.cpp
BlockOps.h
blocktimer.cpp
blocktimer.h
BOOMERAMG.cpp
BOOMERAMG.h
Brick.cpp
Brick.h
Common.h
Coupler.cpp
Coupler.h
Data.cpp
Data.h
DataAbstract.cpp
DataAbstract.h
DataAlgorithm.h
DataBlocks2D.cpp
DataBlocks2D.h
DataC.cpp
DataC.h
DataConstant.cpp
DataConstant.h
DataEmpty.cpp
DataEmpty.h
DataException.cpp
DataException.h
DataExpanded.cpp
DataExpanded.h
DataFactory.cpp
DataFactory.h
DataLazy.cpp
DataLazy.h
DataMaths.cpp
DataMaths.h
Describes binary operations performed on DataVector
DataReady.cpp
DataReady.h
DataTagged.cpp
DataTagged.h
DataTypes.cpp
DataTypes.h
DataVar.cpp
DataVar.h
DataVector.cpp
DataVector.h
Distribution.cpp
Distribution.h
Dodgy.cpp
Dodgy.h
DomainChunk.h
DomainException.cpp
DomainException.h
Dudley.cpp
Dudley.h
DudleyAdapterException.cpp
DudleyAdapterException.h
dudleycpp.cpp
DudleyError.cpp
DudleyError.h
DudleyVersion.h
ElementData.h
dudley/src/ElementFile.cpp
finley/src/ElementFile.cpp
dudley/src/ElementFile.h
finley/src/ElementFile.h
ElementFile_allocTable.cpp
ElementFile_copyTable.cpp
ElementFile_createColoring.cpp
ElementFile_distributeByRankOfDOF.cpp
ElementFile_gather.cpp
ElementFile_jacobeans.cpp
ElementFile_jacobians.cpp
ElementFile_markNodes.cpp
ElementFile_optimizeOrdering.cpp
ElementFile_relableNodes.cpp
ElementFile_scatter.cpp
ElementFile_setCoordinates.cpp
ElementFile_setNodeRange.cpp
ElementFile_setTags.cpp
ElementType.cpp
ElementType.h
error.cpp
error.h
escriptcpp.cpp
EscriptDataset.cpp
EscriptDataset.h
EscriptParams.cpp
EscriptParams.h
esys_malloc.h
Esys_MPI.cpp
Esys_MPI.h
EsysAssert.h
EsysAssertException.cpp
EsysAssertException.h
EsysException.cpp
EsysException.h
esysExceptionTranslator.cpp
esysExceptionTranslator.h
esysFileWriter.h
FCT_Solver.cpp
FCT_Solver.h
Finley.cpp
Finley.h
FinleyAdapterException.cpp
FinleyAdapterException.h
finleycpp.cpp
FinleyDomain.cpp
FinleyDomain.h
FinleyElements.cpp
FinleyElements.h
FinleyError.cpp
FinleyError.h
FinleyNodes.cpp
FinleyNodes.h
FinleyVersion.h
FluxLimiter.cpp
FluxLimiter.h
Functions.cpp
Functions.h
FunctionSpace.cpp
FunctionSpace.h
FunctionSpaceException.cpp
FunctionSpaceException.h
FunctionSpaceFactory.cpp
FunctionSpaceFactory.h
GMRES.cpp
GMRES2.cpp
GSMPI.cpp
ILU.cpp
index.h
dudley/src/IndexList.cpp
finley/src/IndexList.cpp
paso/src/IndexList.cpp
dudley/src/IndexList.h
finley/src/IndexList.h
paso/src/IndexList.h
LapackInverseHelper.cpp
LapackInverseHelper.h
LocalAMG.cpp
LocalAMG_Prolongation.cpp
LocalOps.h
Describes binary operations performed on double*
maths.h
mem.h
MergedSolver.cpp
MergedSolver.h
dudley/src/Mesh.cpp
finley/src/Mesh.cpp
dudley/src/Mesh.h
finley/src/Mesh.h
Mesh_addPoints.cpp
dudley/src/Mesh_createNodeFileMappings.cpp
finley/src/Mesh_createNodeFileMappings.cpp
dudley/src/Mesh_distributeByRankOfDOF.cpp
finley/src/Mesh_distributeByRankOfDOF.cpp
dudley/src/Mesh_findMatchingFaces.cpp
finley/src/Mesh_findMatchingFaces.cpp
dudley/src/Mesh_getPattern.cpp
finley/src/Mesh_getPattern.cpp
Mesh_glueFaces.cpp
Mesh_hex20.cpp
Mesh_hex8.cpp
Mesh_joinFaces.cpp
dudley/src/Mesh_markNodes.cpp
finley/src/Mesh_markNodes.cpp
Mesh_merge.cpp
dudley/src/Mesh_optimizeDOFDistribution.cpp
finley/src/Mesh_optimizeDOFDistribution.cpp
dudley/src/Mesh_optimizeDOFLabeling.cpp
finley/src/Mesh_optimizeDOFLabeling.cpp
dudley/src/Mesh_prepare.cpp
finley/src/Mesh_prepare.cpp
dudley/src/Mesh_print.cpp
finley/src/Mesh_print.cpp
dudley/src/Mesh_read.cpp
finley/src/Mesh_read.cpp
dudley/src/Mesh_readGmsh.cpp
finley/src/Mesh_readGmsh.cpp
Mesh_rec4.cpp
Mesh_rec8.cpp
dudley/src/Mesh_relableElementNodes.cpp
finley/src/Mesh_relableElementNodes.cpp
dudley/src/Mesh_resolveNodeIds.cpp
finley/src/Mesh_resolveNodeIds.cpp
dudley/src/Mesh_setCoordinates.cpp
finley/src/Mesh_setCoordinates.cpp
dudley/src/Mesh_tagmaps.cpp
finley/src/Mesh_tagmaps.cpp
Mesh_tet4.cpp
Mesh_tri3.cpp
dudley/src/Mesh_write.cpp
finley/src/Mesh_write.cpp
dudley/src/CPPAdapter/MeshAdapter.cpp
finley/src/CPPAdapter/MeshAdapter.cpp
dudley/src/CPPAdapter/MeshAdapter.h
finley/src/CPPAdapter/MeshAdapter.h
dudley/src/CPPAdapter/MeshAdapterFactory.cpp
finley/src/CPPAdapter/MeshAdapterFactory.cpp
dudley/src/CPPAdapter/MeshAdapterFactory.h
finley/src/CPPAdapter/MeshAdapterFactory.h
MINRES.cpp
MKL.cpp
MKL.h
mmio.cpp
mmio.h
mpi_C.h
NewtonGMRES.cpp
NodeData.h
dudley/src/NodeFile.cpp
finley/src/NodeFile.cpp
dudley/src/NodeFile.h
finley/src/NodeFile.h
NodeFile_allocTable.cpp
NodeFile_copyTable.cpp
NodeFile_createDenseLabelings.cpp
NodeFile_gather.cpp
NodeFile_scatter.cpp
NodeFile_setCoordinates.cpp
NodeFile_setIdRange.cpp
NodeFile_setTags.cpp
dudley/src/NodeMapping.cpp
finley/src/NodeMapping.cpp
dudley/src/NodeMapping.h
finley/src/NodeMapping.h
NullDomain.cpp
NullDomain.h
Options.h
Options_getPackage.cpp
Options_getSolver.cpp
Options_setDefaults.cpp
Paso.h
PasoException.cpp
PasoException.h
PasoUtil.cpp
PasoUtil.h
pasowrapcpp.cpp
Pattern.cpp
Pattern.h
Pattern_getSubpattern.cpp
Pattern_mis.cpp
Pattern_multiply.cpp
Pattern_reduceBandwidth.cpp
Pattern_unrollBlocks.cpp
PCG.cpp
performance.cpp
performance.h
Pointers.h
Typedefs and macros for reference counted storage
Preconditioner.cpp
Preconditioner.h
Quadrature.cpp
Quadrature.h
ReactiveSolver.cpp
ReactiveSolver.h
Rectangle.cpp
Rectangle.h
RectangularMesh.h
ReferenceElements.cpp
ReferenceElements.h
ReferenceElementSets.cpp
ReferenceElementSets.h
RILU.cpp
Ripley.h
ripleycpp.cpp
ripley/src/RipleyDomain.cpp
weipa/src/RipleyDomain.cpp
ripley/src/RipleyDomain.h
weipa/src/RipleyDomain.h
RipleyElements.cpp
RipleyElements.h
RipleyException.cpp
RipleyException.h
RipleyNodes.cpp
RipleyNodes.h
SchurComplement.cpp
ScriptMPI.cpp
ScriptMPIredirect.cpp
ShapeFunctions.cpp
ShapeFunctions.h
ShapeTable.cpp
ShapeTable.h
SharedComponents.cpp
SharedComponents.h
Smoother.cpp
solve.cpp
Solver.cpp
Solver.h
Solver_applyBlockDiagonalMatrix.cpp
Solver_Function.cpp
SparseMatrix.cpp
SparseMatrix.h
SparseMatrix_addAbsRow.cpp
SparseMatrix_addRow.cpp
SparseMatrix_applyDiagonal.cpp
SparseMatrix_getSubmatrix.cpp
SparseMatrix_getTranspose.cpp
SparseMatrix_invMain.cpp
SparseMatrix_MatrixMatrix.cpp
SparseMatrix_MatrixMatrixTranspose.cpp
SparseMatrix_MatrixVector.cpp
SparseMatrix_nullifyRowsAndCols.cpp
SparseMatrix_saveHB.cpp
SparseMatrix_setValues.cpp
SparseMatrix_unroll.cpp
escript/src/system_dep.h
esysUtils/src/system_dep.h
dudley/src/CPPAdapter/system_dep.h
finley/src/CPPAdapter/system_dep.h
pasowrap/src/system_dep.h
ripley/src/system_dep.h
SystemMatrix.cpp
SystemMatrix.h
SystemMatrix_balancing.cpp
SystemMatrix_copyColCoupleBlock.cpp
SystemMatrix_copyRemoteCoupleBlock.cpp
SystemMatrix_debug.cpp
SystemMatrix_extendedRows.cpp
SystemMatrix_getSystemMatrixTypeId.cpp
SystemMatrix_loadMM.cpp
SystemMatrix_MatrixVector.cpp
SystemMatrix_mergeMainAndCouple.cpp
SystemMatrix_MIS.cpp
SystemMatrix_MIS.h
SystemMatrix_nullifyRows.cpp
SystemMatrix_nullifyRowsAndCols.cpp
SystemMatrix_rowSum.cpp
SystemMatrix_saveHB.cpp
SystemMatrix_saveMM.cpp
SystemMatrix_setValues.cpp
SystemMatrixAdapter.cpp
SystemMatrixAdapter.h
SystemMatrixException.cpp
SystemMatrixException.h
SystemMatrixPattern.cpp
SystemMatrixPattern.h
SystemMatrixPattern_unrollBlocks.cpp
TagMap.cpp
TagMap.h
Taipan.cpp
Taipan.h
TestDomain.cpp
TestDomain.h
TFQMR.cpp
Transport.cpp
Transport.h
Transport_solve.cpp
TransportProblemAdapter.cpp
TransportProblemAdapter.h
TransportProblemException.cpp
TransportProblemException.h
TriangularMesh.h
TRILINOS.h
types.h
UMFPACK.cpp
UMFPACK.h
UnaryFuncs.h
UnaryOp.h
dudley/src/Util.cpp
finley/src/Util.cpp
dudley/src/Util.h
finley/src/Util.h
UtilC.h
Utils.cpp
Utils.h
VisItControl.cpp
VisItControl.h
VisItData.cpp
VisItData.h
vtkCellType.h
weipa.h
weipacpp.cpp
WrappedArray.cpp
WrappedArray.h
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