Gephi 0.7alpha4

Milestone information

Project:
Gephi
Series:
0.7
Version:
0.7alpha4
Released:
2010-04-30  
Registrant:
Mathieu Bastian
Release registered:
2010-04-30
Active:
No. Drivers cannot target bugs and blueprints to this milestone.  

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Assigned to you:
No blueprints or bugs assigned to you.
Assignees:
1 Eduardo Ramos, 1 Martin Skurla, 61 Mathieu Bastian, 1 S├ębastien Heymann, 1 pjmcswee
Blueprints:
1 Implemented
Bugs:
1 New, 3 Incomplete, 1 Opinion, 3 Invalid, 5 Won't Fix, 6 Confirmed, 78 Fix Released

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File Description Downloads
download icon gephi-0.7-alpha4.sources.zip (md5) Sources 1,466
last downloaded 32 weeks ago
download icon gephi-0.7-alpha4.setup.exe (md5) Windows 10,907
last downloaded 17 weeks ago
download icon gephi-0.7-alpha4.dmg (md5) Mac OS X 3,513
last downloaded 12 weeks ago
download icon gephi-0.7-alpha4.tar.gz (md5) Linux 2,039
last downloaded 5 weeks ago
Total downloads: 17,925

Release notes 

Continuously improving 0.7 alpha version. Goals are fixing bugs and add small needed features if necessary. Add PDF Export.

New features

* GraphML export
* PDF Export. Special thanks to Jeremy Subtil.
* EgoNetwork Filter - Get neighbours at depth 1, 2, 3 and Max
* CSV export - Export adjacency list and matrix
* New LabelAdjust algorithm, faster and better quality. Thanks to Mathieu Jacomy.
* Watts-Strogatz Small World Generator

Bugfixes

* Shortest Path and Heatmap tools not working for Undirected Graphs (bug 559866)
* Colors not imported in DOT (bug 559846)
* Can't import a CSV (bug 557305)
* Expansion/Contraction layout mispositionning when graph not centered (bug 561327)
* Statistics disabled when opening project not from Overview (bug 561483)
* Exception when drawing Filter's histogram (bug 570975)
* NullPointerException when filtering undirected graphs (bug 571153)
* Wrong current query on Filters Query Panel (bug 571274)
* Exception when changing filter parameter on a Operator (bug 571287)
* Error when importing nodes with empty labels in NET format (567263)
* ConcurrentModificationException when Import Report opens (bug 571871)
* GraphML importer doesn't detects Undirected graphs (bug 571875)
* Auto-scale doesn't recenters the graph (bug 571907)
* The Statistics report is not updated after executing the Metric again (bug 570971) (Thanks Paul-Antoine Bittner)
* "Node must be in the graph" error (bug 538701)
* Menubar is incomplete (bug 531505)
* Import throws Exception when file is invalid instead of Warning user (bug 530970)
* Settle command not working for Yifan Hu layouts (bug 562822)

Usability

* Heatmap tool description snippet corrected

API

* In PreviewAPI, the background color has been put in the PreviewModel. The PreviewController has been updated as well.
* Change FilterController.filter() to FilterController.filterVisible() and FilterController.select() to FilterController.selectVisible(). The controller is managing this process in a separate thread, with progress, and takes care of properties change. A more simple direct way to filter is required for headless access. The FilterController.filter() has been created and return the GraphView builded by the filter process.
* Expose basic visualization features in a newly created Visualization API. No proper visualization API exists but its creation is necessary to avoid implementation module dependencies.

Updated Modules

* ToolsPlugin
* Algorithms
* DesktopTools
* ProcessorPlugin
* ProjectUI
* ProjectAPI
* ImportAPI
* ImportPlugin
* DesktopImport
* DesktopBranding
* DesktopProject (new)
* DesktopFilters
* ExportPlugin
* ExportPluginUI
* LayoutPlugin
* FiltersAPI
* DesktopStatistics
* FiltersPlugin
* FiltersPluginUI
* FiltersImpl (new)
* VisualizationAPI (new)

Changelog 

This release does not have a changelog.

1 blueprint and 97 bugs targeted

Blueprint Priority Assignee Delivery
Typographical errors Typographical errors 2 Low   11 Implemented
Bug report Importance Assignee Status
547157 #547157 Excessive Redrawing of windows Mac OS X 1 Undecided   0 New
581769 #581769 Color palette doesn't center at 0 1 Undecided   1 Incomplete
616871 #616871 Test display errors related to text encoding 4 Medium   1 Incomplete
628905 #628905 ranking tab disappears when clicking it 1 Undecided   1 Incomplete
599053 #599053 "append graph" and "add full graph" 6 Wishlist   2 Opinion
616841 #616841 UnsatisfiedLinkError on startup on Mac OS X 3 High   3 Invalid
613600 #613600 Timestamps not supported in dynamic mode: java.lang.ArithmeticException 4 Medium   3 Invalid
573673 #573673 Visualisation freeze after a filter export in table column 1 Undecided   3 Invalid
627124 #627124 Mutual edges not detected in Preview with meta-egdes 5 Low   4 Won't Fix
628993 #628993 Screenshot with 'transparent background' option don't render correctly 5 Low   4 Won't Fix
539099 #539099 NullPointerException at org.gephi.data.attributes.serialization.AttributeRowSerializer.readRow 1 Undecided   4 Won't Fix
546916 #546916 an integer node attributes that disappears after selection 1 Undecided   4 Won't Fix
644320 #644320 locks/crash when running modularity or clustering coef on undirected graph 1 Undecided   4 Won't Fix
597145 #597145 messy codes on displaying chinese characters 4 Medium Mathieu Bastian  6 Confirmed
627115 #627115 Filter Saved queries not saved in project files 4 Medium   6 Confirmed
572825 #572825 PDF export - Label can be outside of the builded document 5 Low   6 Confirmed
604510 #604510 Preview doesn"t get Overview's background color 5 Low Mathieu Bastian  6 Confirmed
604687 #604687 Mouse and view are not moving synchronously when dragging canvas 5 Low   6 Confirmed
603077 #603077 Load meta data from GEXF file 6 Wishlist   6 Confirmed
603469 #603469 Wrong edge removed from Edge Weight filter 2 Critical Mathieu Bastian  10 Fix Released
571153 #571153 NullPointerException when filtering undirected graphs 3 High   10 Fix Released
581872 #581872 NullPointerException on importing dynamic graph 3 High Mathieu Bastian  10 Fix Released
584283 #584283 Meta-edges are not displayed 3 High Mathieu Bastian  10 Fix Released
584289 #584289 Preview is not displaying meta-edges 3 High Mathieu Bastian  10 Fix Released
594643 #594643 Errors with Yifan Hu MultiLevel Layout on a filtered graph 3 High Mathieu Bastian  10 Fix Released
596430 #596430 Node Size Mode and Filter Paramaters don't save in project 3 High Mathieu Bastian  10 Fix Released
596872 #596872 Memory Leak in GEXF/GraphML Parser 3 High Mathieu Bastian  10 Fix Released
597458 #597458 NullPointerException when switching between workspaces while a layout is running 3 High Mathieu Bastian  10 Fix Released
610469 #610469 Incorrect mutual edge weight on Preview 3 High Mathieu Bastian  10 Fix Released
612848 #612848 saved preset for layouts creates several instances 3 High Mathieu Bastian  10 Fix Released
616415 #616415 Unable to cancel a project opening 3 High   10 Fix Released
620905 #620905 Installation on Mac OS X v 10.5.8 3 High Mathieu Bastian  10 Fix Released
631663 #631663 Exception on clicking on 'Hierarchy' while running multilevel layout 3 High Mathieu Bastian  10 Fix Released
648617 #648617 Exception on opening project file 3 High Mathieu Bastian  10 Fix Released
519549 #519549 Slowness on picking a partition entry 4 Medium   10 Fix Released
519549 #519549 Slowness on picking a partition entry 4 Medium Mathieu Bastian  10 Fix Released
571263 #571263 EdgeList Database Configuration is not saved 4 Medium   10 Fix Released
573685 #573685 Filtered graph not exported with "Select" pressed 4 Medium Mathieu Bastian  10 Fix Released
578876 #578876 Opening Archived ZIP files is broken 4 Medium Mathieu Bastian  10 Fix Released
581629 #581629 GraphML importer doesn't import node labels data 4 Medium Mathieu Bastian  10 Fix Released
583397 #583397 Cannot save / saves as when opening a Gephi by doubleclick a graph in Windows 4 Medium Mathieu Bastian  10 Fix Released
584286 #584286 ForceAtlas and Fruchterman Reingold not layouting with meta-edges 4 Medium Mathieu Bastian  10 Fix Released
587450 #587450 Memory Leak in Graph Distance 4 Medium pjmcswee  10 Fix Released
594231 #594231 Ranking parameters re-initialized at each new ranking 4 Medium   10 Fix Released
595223 #595223 Can't select Postgresql driver in database import settings 4 Medium Mathieu Bastian  10 Fix Released
603134 #603134 Can't display edge weight as text 4 Medium Mathieu Bastian  10 Fix Released
603478 #603478 Import transform to Undirected don't merge weight 4 Medium Mathieu Bastian  10 Fix Released
605947 #605947 Right click on workspace after deleting a node throws "node can't be null" 4 Medium Mathieu Bastian  10 Fix Released
606305 #606305 In/Out degree metric doesn't work with undirected graphs 4 Medium Mathieu Bastian  10 Fix Released
616037 #616037 Partition colors in Filters are different from those in Partition 4 Medium   10 Fix Released
616814 #616814 Workspace Selection failed to refresh after closing workspace 4 Medium Mathieu Bastian  10 Fix Released
618726 #618726 Visualization selection color inversion between 'out' and 'both' color 4 Medium Mathieu Bastian  10 Fix Released
619069 #619069 'Format' not recognized on DL import 4 Medium Mathieu Bastian  10 Fix Released
620337 #620337 Wrong folder selected in the Export Panel when changing file type 4 Medium Mathieu Bastian  10 Fix Released
624671 #624671 Generating a graph on a previously loaded undirected graph 4 Medium Mathieu Bastian  10 Fix Released
626378 #626378 Wrong stroke weight when SVG imported in Illustrator 4 Medium Mathieu Bastian  10 Fix Released
626865 #626865 Errors at PDF export when labels have font size zero 4 Medium Mathieu Bastian  10 Fix Released
627567 #627567 Text not displayed in Preview 4 Medium Mathieu Bastian  10 Fix Released
631689 #631689 Wrong node size when Ranking has same min and max size 4 Medium Mathieu Bastian  10 Fix Released
632459 #632459 Ranking not refreshed when graph filtered 4 Medium Mathieu Bastian  10 Fix Released
648602 #648602 Partition filter automatically filters null value 4 Medium Mathieu Bastian  10 Fix Released
651273 #651273 PDF Export only with default font 4 Medium Mathieu Bastian  10 Fix Released
572876 #572876 FileNotFoundException during saving of PDF file 5 Low   10 Fix Released
572889 #572889 file import occurs even when closing the report window 5 Low Mathieu Bastian  10 Fix Released
577843 #577843 Auto-scale flips the graph 5 Low Mathieu Bastian  10 Fix Released
584958 #584958 Various Exceptions during importing database 5 Low Martin Skurla  10 Fix Released
588649 #588649 Cancelling a SVG/PDF export makes Gephi close 5 Low   10 Fix Released
590226 #590226 Impossible to cancel the Average Path Length Statistic calculation 5 Low   10 Fix Released
594176 #594176 Preview ratio not available at first time 5 Low   10 Fix Released
594511 #594511 Filtering not refreshed when sub-queries set or removed 5 Low Mathieu Bastian  10 Fix Released
594515 #594515 Default selection of Nodes in Data Laboratory necessary 5 Low Eduardo Ramos  10 Fix Released
594630 #594630 "CommandLineParsing null" message when error on opening file from command line or desktop 5 Low Mathieu Bastian  10 Fix Released
594644 #594644 Progress is not shown when opening/saving project 5 Low Mathieu Bastian  10 Fix Released
598157 #598157 Can't import the same file twice in Welcome window 5 Low   10 Fix Released
598767 #598767 csv file export problem 5 Low   10 Fix Released
601066 #601066 Partition "All Blacks" feature randomizes colors 5 Low Mathieu Bastian  10 Fix Released
602470 #602470 Visualization size limitation 5 Low Mathieu Bastian  10 Fix Released
612902 #612902 Partitions don't refresh when opening project not from Overview 5 Low   10 Fix Released
614606 #614606 z-coordinate not exported in GraphML 5 Low Mathieu Bastian  10 Fix Released
615844 #615844 Wrong node positions when setting X or Y to zero 5 Low Mathieu Bastian  10 Fix Released
616052 #616052 Partition Settings in Filter not saved on switching workspaces 5 Low   10 Fix Released
616829 #616829 Error when opening Plugin Center 5 Low Mathieu Bastian  10 Fix Released
626394 #626394 SVG files not listed in Export dialog 5 Low Mathieu Bastian  10 Fix Released
626483 #626483 Selected filter query not properly refreshed in UI 5 Low Mathieu Bastian  10 Fix Released
628223 #628223 Negative edges not rendered in Preview 5 Low Mathieu Bastian  10 Fix Released
631341 #631341 Can't close project when generating a graph 5 Low Mathieu Bastian  10 Fix Released
649920 #649920 Nodes not unselected after turning off Selection on Filter Panel 5 Low Mathieu Bastian  10 Fix Released
574807 #574807 Node invisible (too small) when created with the node pencil 6 Wishlist Mathieu Bastian  10 Fix Released
583386 #583386 Export to pdf background is always white 6 Wishlist Mathieu Bastian  10 Fix Released
586237 #586237 Edges native color are not displayed in Preview 6 Wishlist Mathieu Bastian  10 Fix Released
594520 #594520 Ranking and Partition parameters list not ordered 6 Wishlist Mathieu Bastian  10 Fix Released
594793 #594793 Read positions from dot files 6 Wishlist   10 Fix Released
598170 #598170 Node Degree not in Label Text settings 6 Wishlist Mathieu Bastian  10 Fix Released
619893 #619893 import of pajek net has floating pt problem 6 Wishlist S├ębastien Heymann  10 Fix Released
626495 #626495 Can't drag a filter sub-query to become a root query 6 Wishlist Mathieu Bastian  10 Fix Released
648600 #648600 Edges weight not merged with parallel edges 6 Wishlist Mathieu Bastian  10 Fix Released
649908 #649908 Ego Filter doesn't include the node itself 6 Wishlist Mathieu Bastian  10 Fix Released
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