Package | Description |
---|---|
apps | |
data | |
tractography |
Modifier and Type | Method and Description |
---|---|
static RGB_ScalarImage |
RGB_ScalarImage.imageFromBallStick(VoxelOrderDataSource data,
int[] dataDims,
double[] voxelDims,
double[][][] scalars,
double minScalar,
double maxScalar)
Read image from Ball and stick input.
|
static RGB_ScalarImage |
RGB_ScalarImage.imageFromPICoPDFs(VoxelOrderDataSource data,
int maxPDs,
int paramsPerPD,
int[] dataDims,
double[] voxelDims,
double[][][] scalars,
double minScalar,
double maxScalar)
Read an image from PICoPDFs.
|
static RGB_ScalarImage |
RGB_ScalarImage.imageFromPICoPDFs(VoxelOrderDataSource data,
int maxPDs,
int paramsPerPD,
int[] dataDims,
double[] voxelDims,
double[][][] scalars,
double minScalar,
double maxScalar,
int eigIndex)
Read an image from PICoPDFs.
|
static RGB_ScalarImage |
RGB_ScalarImage.imageFromSphFuncPDs(VoxelOrderDataSource data,
int[] dataDims,
double[] voxelDims,
double[][][] scalars,
double minScalar,
double maxScalar)
Read image from ODF peak input.
|
static RGB_ScalarImage |
RGB_ScalarImage.imageFromTensorEigenSys(VoxelOrderDataSource data,
int[] dataDims,
double[] voxelDims,
double[][][] scalars,
double minScalar,
double maxScalar)
Read an image from tensor eigen system input.
|
static RGB_ScalarImage |
RGB_ScalarImage.imageFromTensorEigenSys(VoxelOrderDataSource data,
int[] dataDims,
double[] voxelDims,
double[][][] scalars,
double minScalar,
double maxScalar,
int eigIndex)
Read an image from tensor eigen system input.
|
static void |
PICoPDFs.mapDTData(VoxelOrderDataSource data,
LookupTable[] luts,
OutputManager om)
Get PICo PDFs for DT data.
|
static void |
PICoPDFs.mapSFData(VoxelOrderDataSource data,
java.lang.String pdf,
boolean log,
java.lang.String[] funcFiles,
OutputManager om)
Get PICo PDFs for SF data.
|
Modifier and Type | Class and Description |
---|---|
class |
VoxelOrderDW_DataSource
Purpose:
Source of voxel order diffusion-weighted MRI data from a data file or
standard input.
|
class |
VoxelOrderScaledDataSource
Like a regular VoxelOrderDataSource, except that it scales the input data.
|
Constructor and Description |
---|
BallStickTractographyImage(VoxelOrderDataSource dataSource,
int[] dataDims,
double[] voxelDims)
Constructs an image from the data sources.
|
DT_TractographyImage(VoxelOrderDataSource tensorSource,
int maxPDs,
int[] dataDims,
double[] voxelDims)
Constructs an image from the data sources.
|
PD_TractographyImage(VoxelOrderDataSource pdSource,
int maxPDs,
int[] dataDims,
double[] voxelDims)
Constructs an image from a data source.
|
PICoTractographyImage(VoxelOrderDataSource dataSource,
int maxPDs,
PICoPDF pdf,
int[] dataDims,
double[] voxelDims,
java.util.Random ran)
Constructs an image from the data sources.
|