- objectType - Variable in class imaging.MetaImageHeader
-
ObjectType, which for us is always Image.
- offset - Variable in class imaging.MetaImageHeader
-
Offset
- oneDirectionStats(double[][], int) - Static method in class apps.InversionStats
-
Computes the principal eigenvector (ex, ey, ez) and eigenvalues (l1, l2,
l3) of the mean dyadic of a list of vectors.
- OneTensorLUTGenerator - Class in tractography
-
Fits some distribution to samples of tensors with added noise.
- OneTensorLUTGenerator(DW_Scheme, double, double, Random) - Constructor for class tractography.OneTensorLUTGenerator
-
- ONETENVALSPERVOXEL - Static variable in class tools.CL_Initializer
-
The number of values per voxel in single tensor data.
- optimizers - package optimizers
-
- optToModel(double[]) - Method in class fitters.Codec
-
Maps the optimized parameters to the model parameters.
- orderComponentsByDirection(double[][], int, int, int) - Method in class apps.InversionStats
-
Reorders the array of inversion properties when it contains multiple
directions to maximize the similarity of the directions in each
component.
- OrderedAcqMinimizer - Class in misc
-
Superclass for classes that order electrostatic point sets.
- OrderedAcqMinimizer(int, double, int, String, Random) - Constructor for class misc.OrderedAcqMinimizer
-
Initializes points in a random order.
- OrderedAcqMinimizer(double[][], double, int, String, Random) - Constructor for class misc.OrderedAcqMinimizer
-
- OrderedAcqSingleSubsetMinimizer - Class in misc
-
- OrderedAcqSingleSubsetMinimizer(int, int, double, int, String, Random) - Constructor for class misc.OrderedAcqSingleSubsetMinimizer
-
- OrderedAcqSingleSubsetMinimizer(double[][], int, double, int, String, Random) - Constructor for class misc.OrderedAcqSingleSubsetMinimizer
-
- OrderedAcqSubsetMinimizer - Class in misc
-
Divides a set of gradient directions into subsets, and searches for a configuration
where the sum of the electrostatic energy of each subset is minimal.
- OrderedAcqSubsetMinimizer(int, int[], double, int, String, Random) - Constructor for class misc.OrderedAcqSubsetMinimizer
-
- OrderedAcqSubsetMinimizer(double[][], int[], double, int, String, Random) - Constructor for class misc.OrderedAcqSubsetMinimizer
-
- OrderedAcqWeightedMinimizer - Class in misc
-
- OrderedAcqWeightedMinimizer(int, double, int, String, Random) - Constructor for class misc.OrderedAcqWeightedMinimizer
-
- OrderedAcqWeightedMinimizer(double[][], double, int, String, Random) - Constructor for class misc.OrderedAcqWeightedMinimizer
-
- OrderElectrostaticPoints - Class in apps
-
Orders electrostatic points according to the method in Cook et al (ISMRM 2006, p.
- OrderElectrostaticPoints(String[]) - Constructor for class apps.OrderElectrostaticPoints
-
- orderPeaksByMeanStrength(double[][], int, int, int) - Method in class apps.MultiFibreReconStats
-
Reorders the array of inversion properties when it contains
multiple directions by the mean strength of the peak directions
across all trials.
- OrientationBiasMap - Class in apps
-
Iterates over the hemisphere, fitting synthetic data at each point and evaluating its error statistics.
- OrientationBiasMap(String[]) - Constructor for class apps.OrientationBiasMap
-
- out - Static variable in class apps.Shredder
-
- outlierMapFile - Static variable in class tools.CL_Initializer
-
Name of the outlier map for RESTORE.
- output(byte[]) - Static method in class apps.Shredder
-
Outputs the chunk to the standard output.
- output(double[]) - Method in class data.OutputManager
-
Outputs the data for one voxel to the selected output stream.
- outputBitMap(DataOutputStream, boolean) - Static method in class apps.SphFuncBitMap
-
Outputs the bitmap image to a file.
- outputDataType - Static variable in class data.OutputManager
-
The type of the output data
- outputFile - Static variable in class data.OutputManager
-
Name of the output file.
- OutputManager - Class in data
-
Purpose:
Handles output of data from various applications.
- OutputManager() - Constructor for class data.OutputManager
-
Sets up an output stream for an output file if the output file
has been specified, otherwise stays with the default output
stream.
- OutsideLUTRangeException - Exception in tractography
-
- OutsideLUTRangeException(String) - Constructor for exception tractography.OutsideLUTRangeException
-