Package | Description |
---|---|
data.compartments | |
models | |
models.compartments | |
optimizers |
Modifier and Type | Class and Description |
---|---|
class |
Astrocylinders
Implents the compartment interface for a restricted isotropic compartment,
cylinders with distributed orientations.
|
class |
Astrosticks
Implements the compartment interface for a restricted isotropic compartment,
sticks with distributed orientations.
|
class |
Ball
implents the compartment interface for an isotropic
Ball compartment
|
class |
CompartmentModel
generalised compartment model for generating data from a weighted
sum of two or more compartments.
|
class |
CylinderGPD |
class |
Dot
Implements the compartment interface for an isotropic restricted compartment,
Spherical boundary compartment with zero radius.
|
class |
GammaDistribRadiiCylinders |
class |
ListDistributionCompartment |
class |
SphereGPD
implents the compartment interface for an isotropic restricted compartment,
Spherical boundary compartment using the GPD approximation.
|
class |
Stick
implements the compartment interface for a restricted compartment (according
to Behren's ball and stick model) the Stick compartment
|
class |
Tensor |
class |
Zeppelin |
Modifier and Type | Method and Description |
---|---|
static ParametricModel |
CompartmentFactory.getCompartment(java.lang.String compartmentName) |
Constructor and Description |
---|
ListDistributionCompartment(int numParams,
ParametricModel model) |
Modifier and Type | Class and Description |
---|---|
class |
BallAndStickModel
Purpose:
Implements Behrens' ball-and-stick model
Description:
Model parameters are: {unweighted signal S0, intra-stick volume
fraction f, ball diffusivity, stick diffusivity, theta, phi}.
|
Modifier and Type | Class and Description |
---|---|
class |
GDRCylinders |
Modifier and Type | Method and Description |
---|---|
static ParametricModel |
CompartmentFactory.getCompartment(java.lang.String compartmentName) |
Constructor and Description |
---|
ListDistributionCompartment(int numParams,
ParametricModel model) |
Constructor and Description |
---|
LM_GaussianMinimizer(DW_Scheme scheme,
ParametricModel pm,
Codec cod)
Constructor needs all the following:
|
LM_OffGaussMinimizer(DW_Scheme scheme,
ParametricModel pm,
Codec cod,
double sigma)
Constructor needs all the following:
|
LM_RicianMinimizer(DW_Scheme scheme,
ParametricModel pm,
Codec cod,
double sigma)
Constructor needs all the following:
|
MCMC_GaussianMinimizer(DW_Scheme scheme,
ParametricModel pm,
Codec cod,
Prior p,
Perturbation pb,
double sigma)
Constructor needs all the following:
|
MCMC_OffGaussMinimizer(DW_Scheme scheme,
ParametricModel pm,
Codec cod,
Prior p,
Perturbation pb,
double sigma)
Constructor needs all the following:
|
MCMC_RicianMinimizer(DW_Scheme scheme,
ParametricModel pm,
Codec cod,
Prior p,
Perturbation pb,
double sigma)
Constructor needs all the following:
|
MultiRunLM_GaussianMinimizer(DW_Scheme scheme,
ParametricModel pm,
Codec cod,
Perturbation p,
int repeats,
int seed) |
MultiRunLM_Minimizer(DW_Scheme scheme,
ParametricModel pm,
Codec cod,
Perturbation p,
int repeats,
int seed) |
MultiRunLM_OffGaussMinimizer(DW_Scheme scheme,
ParametricModel pm,
Codec cod,
Perturbation p,
int repeats,
int seed,
double sigma) |
MultiRunLM_RicianMinimizer(DW_Scheme scheme,
ParametricModel pm,
Codec cod,
Perturbation p,
int repeats,
int seed,
double sigma) |
MultiRunMinimizer(DW_Scheme scheme,
ParametricModel pm,
Codec cod,
Perturbation p,
int repeats,
int seed)
Constructor needs all the following:
|