All Classes
ACG_Distribution
ACG_Fitter
AddNoise
AgnosticScan
AnalyzeHeader
ArrayOps
Astrocylinders
Astrocylinders
Astrosticks
Astrosticks
AxialDistribution
B_VectorScheme
Ball
Ball
BallAndStickLM_GaussianFitter
BallAndStickLM_OffGaussFitter
BallAndStickLM_RicianFitter
BallAndStickModel
BallAndStickMultiRunLM_GaussianFitter
BallCylinderAstrocylindersLM_Fitter
BallCylinderAstrocylindersMultiRunLM_Fitter
BallCylinderAstrosticksLM_Fitter
BallCylinderAstrosticksMultiRunLM_Fitter
BallCylinderDotLM_Fitter
BallCylinderDotMultiRunLM_Fitter
BallCylinderLM_Fitter
BallCylinderMultiRunLM_Fitter
BallCylinderSphereLM_Fitter
BallCylinderSphereMultiRunLM_Fitter
BallGDRCylindersAstrocylindersLM_Fitter
BallGDRCylindersAstrocylindersMultiRunLM_Fitter
BallGDRCylindersAstrosticksLM_Fitter
BallGDRCylindersAstrosticksMultiRunLM_Fitter
BallGDRCylindersDotLM_Fitter
BallGDRCylindersDotMultiRunLM_Fitter
BallGDRCylindersLM_Fitter
BallGDRCylindersMultiRunLM_Fitter
BallGDRCylindersSphereLM_Fitter
BallGDRCylindersSphereMultiRunLM_Fitter
BallStick
BallStickAstrocylindersLM_Fitter
BallStickAstrocylindersMultiRunLM_Fitter
BallStickAstrosticksLM_Fitter
BallStickAstrosticksMultiRunLM_Fitter
BallStickDotLM_Fitter
BallStickDotMultiRunLM_Fitter
BallStickFitter
BallStickInversion
BallStickLM_Fitter
BallStickLM_GaussianFitter
BallStickMCMC_Fitter
BallStickMultiRunLM_Fitter
BallStickMultiRunLM_GaussianFitter
BallSticksOrientationViewer
BallStickSphereLM_Fitter
BallStickSphereMultiRunLM_Fitter
BallStickTractographyImage
BasicCylinder
BasisSumFactory
BayesDiracBallStickRandomizer
BayesDiracCylSymmTensorRandomizer
BayesDiracRandomizer
BayesDiracTractographyImage
BesselFunctions
BiexponLM_GaussianFitter
BiexponMultiRunLM_GaussianFitter
BinaryToText
BinghamDistribution
BinghamFitter
BiZeppelinLM_Fitter
BiZeppelinMultiRunLM_Fitter
BootstrapDataSynthesizer
BootstrapDataSynthFromInput
BootstrapDataSynthFromSimulationInput
BootstrapTractographyImage
BoundingBox
BS_DT_TractographyImage
BufferedInflaterInputStream
CellularLattice
CholeskyDecomposition
ChunkStats
CL_Initializer
ClassifiedModelFit
Codec
CombineTwoFibreLUTs
CompartmentFactory
CompartmentFactory
CompartmentFitter
CompartmentModel
CompartmentModel
CompartmentModelOrientationViewer
CompartmentType
CompartmentType
Complex
ComplexNumberException
ConjGradMinimizer
ConjGradMinimizerException
ConjGradMinimizerTest
ConnectionProbabilityImage
ConnectivityMapping
ConnectivitySegmentedImage
ConsistencyFraction
ConvergenceException
CountSeeds
CP_StatMap
CP_Stats
CrossingCylinderSubstrate
Cylinder
CylinderFactory
CylinderFactory.CylType
CylinderGPD
CylinderGPD
CylinderModel
CylinderSubstrate
CylindricalSurfaceStepGenerator
DataModel
DataSource
DataSourceException
DataStats
DataSynthesizer
DataSynthFromBallStickInput
DataSynthFromDT_Input
DataSynthFromInput
DataSynthFromMultiTensorInput
DataSynthFromThreeTensorInput
DataSynthFromTwoTensorInput
DB
DeconvToCamenoFormat
DiffDataFitter
DiffTensorFitter
DiffTensorUnConFitter
DiffusionInversion
DiffusionSimulation
DistributedRadiusCylinderSubstrate
Dot
Dot
DT
DT_EigenSystem
DT_FitMatrix
DT_Inversion
DT_LinearInterpolator
DT_LookupTableGenerator
DT_ShapeStatistics
DT_ToCamino
DT_ToNii
DT_TractographyImage
DW_Scheme
DynamicScalarImage
Edge
EigenSystem3D
EigenvalueDecomposition
EightNeighbourInterpolator
ElasticReflector
ElectrostaticSubsets
EmptySubstrate
EndianCorrectInputStream
EndianCorrectOutputStream
EndianNeutralDataInputStream
EntryPoint
ErrorFunction
ErrorFunctionException
EstimateSNR
EulerFibreTracker
EvenSHS
EvenSphHarmFitter
EvenSphHarmSignalFitter
Executable
ExternalDataSource
F_TestThresholdSelector
FacetCylinder
FACT_TendFibreTracker
FanningGrid
FibreTracker
FileInput
FileOutput
FitAlgorithm
FitModel
Fitter
FixedLengthStepGenerator
FixedSTD_GaussianPerturbation
FracAnis
FreeFormROI
FSL_ToScheme
GammaDistribRadiiCylinders
GammaFunctions
GammaRandom
GatherStats
GaussianMixture
GDRCylinders
GenerateDTLUT
GenerateMFR_LUT
GradientWaveform_Scheme
Graph
HistBin
Histogram
ImageHeader
ImageInterpolator
ImageToVoxel
ImagSH
ImportSH_Coeffs
IncompleteBeta
IncompleteBetaException
InversionIndex
InversionStats
ISCodes
ISCodesException
KeyboardInput
LEFilterInputStream
LEFilterOutputStream
Line
LinearADC_Inversion
LinearBasisFunction
LinearBasisSum
LinearDT_Inversion
LinearInversion
LinearRecon
LinIntDTEulerFibreTracker
LinIntVectorEulerFibreTracker
LinIntVectorRK4FibreTracker
ListDistributionCompartment
ListDistributionCompartment
LM_GaussianMinimizer
LM_Minimizer
LM_OffGaussMinimizer
LM_RicianMinimizer
LoggedException
LookupTable
LUDecomposition
MagicSquareExample
MarkovChainMonteCarlo
MarkovChainMonteCarloException
MarquardtChiSqFitter
MarquardtMinimiser
MarquardtMinimiserException
MarquardtMinimiserNonConvergenceException
MarquardtMinimiserTest
Maths
MatlabArrayDataSource
Matrix
MaxCP
MaxEntProfile
MCMC_Fitter
MCMC_GaussianMinimizer
MCMC_Minimizer
MCMC_OffGaussMinimizer
MCMC_RicianMinimizer
MCMCMinimiserTest
MeanCP
MeanDiff
MedianCP
MESD
MESD_Fitter
MESD_Inversion
MeshSubstrate
MetaImageHeader
MetaImageHeader.AnatomicalOrientation
MetaImageHeader.DataType
MetaImageHeader.ObjectType
MinCP
Minimizer
MinimizerException
MMWMD_BasicLM_DirectFitter
MMWMD_BasicMCMC_Fitter
MMWMD_BasicMultiRunLM_DirectFitter
MMWMD_FixedLM_DirectFitter
MMWMD_FixedMCMC_Fitter
MMWMD_FixedMultiRunLM_DirectFitter
MMWMD_InVivoLM_DirectFitter
MMWMD_InVivoLM_GaussianFitter
MMWMD_InVivoMCMC_Fitter
MMWMD_InVivoMultiRunLM_DirectFitter
ModelFit
ModelIndex
ModelPDF
MSdispStatsModule
MTRandom
MultiFibreReconStats
MultiRunLM_GaussianMinimizer
MultiRunLM_Minimizer
MultiRunLM_OffGaussMinimizer
MultiRunLM_RicianMinimizer
MultiRunMinimizer
MultiTensorInversion
MyelinatedCylinder
NC_ProbFibreTracker
NeighbourChoiceInterpolator
NewtonRaphsonSolver
Nifti1Dataset
NoiseModel
NonInterpolatedFibreTracker
NonIntProbFibreTracker
NonLinearDT_Inversion
NumDeriv
NumericalIntegration
OneTensorLUTGenerator
OrderedAcqMinimizer
OrderedAcqSingleSubsetMinimizer
OrderedAcqSubsetMinimizer
OrderedAcqWeightedMinimizer
OrderElectrostaticPoints
OrientationBiasMap
OutputManager
OutsideLUTRangeException
ParallelCylinderSubstrate
ParametricModel
PD
PD_OrientationViewer
PD_TractographyImage
PDList
PercCellularLattice
PercolationSubstrate
Perturbation
PICoACGRandomizer
PICoBinghamRandomizer
PICoBootstrapRandomizer
PICoPDF
PICoPDF_OrientationViewer
PICoPDFs
PICoRandomizer
PICoTractographyImage
PICoWatsonRandomizer
PLYreader
Point3D
PointListROI
PointSetToScheme
PolynomialFunction
PolynomialFunction1D
PolynomialFunction2D
PowellMinimiser
PowellMinimiserException
Prior
ProbabilisticInterpolator
ProcessStreamlines
QBallMX
QRDecomposition
Quad
RBF_Sum
RealMatrix
RealSH
RectGradSteTanScheme
RectGradTRSE_Scheme
RegionOfInterest
Reorient
RepBS_DT_TractographyImage
RestoreDT_Inversion
RGB_ScalarImage
RK4FibreTracker
Rotations
ScalarImage
ScanFactory
ScanFactory.ScanType
ScannerOrderDataSource
ScannerOrderScaledDataSource
ScannerToVoxel
SchemeToFSL
SequenceStats
Shredder
SimplePICoRandomizer
SimulableScheme
SimulatedAnnealingOptimizer
SimulationParams
SingularValueDecomposition
SparseVectorImage
SpatiallyVaryingStepGenerator
SphDeconvKernels
SphereGPD
SphereGPD
SphericalDistributionFitter
SphericalFunction
SphericalHarmonicException
SphericalHarmonics
SphericalPoints
SphericalPointSet
SphFuncAnisotropy
SphFuncBitMap
SphFuncKurtosis
SphFuncPD_Stats
SphFuncPeaksOrientationViewer
SphFuncPICoCalibrationData
SphFuncSkewness
SphHarmFitter
SphPDF_Fit
Split4D_NiiImage
SquashyCylinder
SquashyInflammationSubstrate
StandardTestFunctions
StatisticsModule
StatisticsModuleFactory
StatisticsModuleFactory.StatsModuleType
StejskalTannerScheme
StepAmender
StepAmenderFactory
StepAmenderFactory.AmenderType
StepGenerator
StepGeneratorFactory
StepGeneratorFactory.StepType
Stick
Stick
StickAndDiffuse
StickyCylinderSubstrate
StickyStatsModule
StickyWalker
StreamlineROI_Filter
StreamlineTractography
StreamlineTractography.ImageType
StripedCellularLattice
SubsetScheme
Substrate
SubstrateFactory
SubstrateFactory.SubstrateType
SubstrateObject
SumCP
SVAnalyticalFunction
SVD_Exception
SyntheticBootstrapper
SyntheticData
SyntheticScan
TargetCP_Image
TargetProbsToASCII
TendInterpolator
Tensor
Tensor
TensorCylinderAstrocylindersLM_Fitter
TensorCylinderAstrocylindersMultiRunLM_Fitter
TensorCylinderAstrosticksLM_Fitter
TensorCylinderAstrosticksMultiRunLM_Fitter
TensorCylinderDotLM_Fitter
TensorCylinderDotMultiRunLM_Fitter
TensorCylinderLM_Fitter
TensorCylinderMultiRunLM_Fitter
TensorCylinderSphereLM_Fitter
TensorCylinderSphereMultiRunLM_Fitter
TensorGDRCylindersAstrocylindersLM_Fitter
TensorGDRCylindersAstrocylindersMultiRunLM_Fitter
TensorGDRCylindersAstrosticksLM_Fitter
TensorGDRCylindersAstrosticksMultiRunLM_Fitter
TensorGDRCylindersDotLM_Fitter
TensorGDRCylindersDotMultiRunLM_Fitter
TensorGDRCylindersLM_Fitter
TensorGDRCylindersMultiRunLM_Fitter
TensorGDRCylindersSphereLM_Fitter
TensorGDRCylindersSphereMultiRunLM_Fitter
TensorModelFitter
TensorOrientationViewer
TensorStickAstrocylindersLM_Fitter
TensorStickAstrocylindersMultiRunLM_Fitter
TensorStickAstrosticksLM_Fitter
TensorStickAstrosticksMultiRunLM_Fitter
TensorStickDotLM_Fitter
TensorStickDotMultiRunLM_Fitter
TensorStickLM_Fitter
TensorStickMultiRunLM_Fitter
TensorStickSphereLM_Fitter
TensorStickSphereMultiRunLM_Fitter
TestMatrix
ThreeTensorAxiSymFitter
ThreeTensorAxiSymFixMP_Fitter
ThreeTensorCholFitter
ThreeTensorCholFixMP_Fitter
ThreeTensorFitter
ThreeTensorInversion
ThreeTensorOneAxiSymFitter
ThreeTensorOneAxiSymFixMP_Fitter
ThreeTensorTwoAxiSymFitter
ThreeTensorTwoAxiSymFixMP_Fitter
ThresholdB0
TraceD
Tract
TractCollection
TractCounter
TractographyImage
TractShredder
TractSource
TractStatisticFilter
TractStatisticImage
TractStatistics
Triangle
TRSE_Scheme
TuchRBF
TuchRBF_Sum
TwoFibreACGFitter
TwoFibreBinghamFitter
TwoFibreBipolarWatsonFitter
TwoFibreFixedPropWatsonFitter
TwoFibreWatsonFitter
TwoTensorAxiSymFitter
TwoTensorAxiSymFixMP_Fitter
TwoTensorCholFitter
TwoTensorCholFixMP_Fitter
TwoTensorFitter
TwoTensorInversion
TwoTensorLUTGenerator
TwoTensorOneAxiSymFitter
TwoTensorOneAxiSymFixMP_Fitter
Vector3D
VectorLinearInterpolator
Voxel
VoxelClassify
VoxelList
VoxelMean
VoxelOrderDataSource
VoxelOrderDW_DataSource
VoxelOrderScaledDataSource
VoxelToScanner
VoxelwiseStatisticalImage
VTK_Streamlines
Walker
WalkerFactory
WatsonD
WatsonDistribution
WatsonFitter
WeightedLinearDT_Inversion
WildBootstrapDataSynth
WildBS_DT_DataSynth
WildBS_DT_TractographyImage
WriteZeros
Zeppelin
Zeppelin
ZeppelinCylinderAstrocylindersLM_Fitter
ZeppelinCylinderAstrocylindersMultiRunLM_Fitter
ZeppelinCylinderAstrosticksLM_Fitter
ZeppelinCylinderAstrosticksMultiRunLM_Fitter
ZeppelinCylinderDotCSF_LM_DirectFitter
ZeppelinCylinderDotCSF_MultiRunLM_DirectFitter
ZeppelinCylinderDotLM_DirectFitter
ZeppelinCylinderDotLM_Fitter
ZeppelinCylinderDotLM_GaussianFitter
ZeppelinCylinderDotMCMC_GaussianFitter
ZeppelinCylinderDotMultiRunLM_DirectFitter
ZeppelinCylinderDotMultiRunLM_Fitter
ZeppelinCylinderDotMultiRunLM_GaussianFitter
ZeppelinCylinderLM_DirectFitter
ZeppelinCylinderLM_Fitter
ZeppelinCylinderLM_GaussianFitter
ZeppelinCylinderMultiRunLM_DirectFitter
ZeppelinCylinderMultiRunLM_Fitter
ZeppelinCylinderMultiRunLM_GaussianFitter
ZeppelinCylinderSphereLM_Fitter
ZeppelinCylinderSphereMultiRunLM_Fitter
ZeppelinCylinderSphereMultiRunLM_GaussianFitter
ZeppelinCylinderTortLM_Fitter
ZeppelinCylinderTortMultiRunLM_Fitter
ZeppelinGDRCylindersAstrocylindersLM_Fitter
ZeppelinGDRCylindersAstrocylindersMultiRunLM_Fitter
ZeppelinGDRCylindersAstrosticksLM_Fitter
ZeppelinGDRCylindersAstrosticksLM_GaussianFitter
ZeppelinGDRCylindersAstrosticksMultiRunLM_Fitter
ZeppelinGDRCylindersAstrosticksMultiRunLM_GaussianFitter
ZeppelinGDRCylindersDotLM_Fitter
ZeppelinGDRCylindersDotLM_GaussianFitter
ZeppelinGDRCylindersDotMultiRunLM_Fitter
ZeppelinGDRCylindersDotMultiRunLM_GaussianFitter
ZeppelinGDRCylindersLM_Fitter
ZeppelinGDRCylindersLM_GaussianFitter
ZeppelinGDRCylindersMultiRunLM_Fitter
ZeppelinGDRCylindersMultiRunLM_GaussianFitter
ZeppelinGDRCylindersSphereLM_Fitter
ZeppelinGDRCylindersSphereLM_GaussianFitter
ZeppelinGDRCylindersSphereMultiRunLM_Fitter
ZeppelinGDRCylindersSphereMultiRunLM_GaussianFitter
ZeppelinStickAstrocylindersLM_Fitter
ZeppelinStickAstrocylindersLM_GaussianFitter
ZeppelinStickAstrocylindersMultiRunLM_Fitter
ZeppelinStickAstrocylindersMultiRunLM_GaussianFitter
ZeppelinStickAstrosticksLM_Fitter
ZeppelinStickAstrosticksLM_GaussianFitter
ZeppelinStickAstrosticksMultiRunLM_Fitter
ZeppelinStickAstrosticksMultiRunLM_GaussianFitter
ZeppelinStickDotLM_Fitter
ZeppelinStickDotLM_GaussianFitter
ZeppelinStickDotMultiRunLM_Fitter
ZeppelinStickDotMultiRunLM_GaussianFitter
ZeppelinStickLM_DirectFitter
ZeppelinStickLM_Fitter
ZeppelinStickLM_GaussianFitter
ZeppelinStickMultiRunLM_DirectFitter
ZeppelinStickMultiRunLM_Fitter
ZeppelinStickMultiRunLM_GaussianFitter
ZeppelinStickSphereLM_Fitter
ZeppelinStickSphereLM_GaussianFitter
ZeppelinStickSphereMultiRunLM_Fitter
ZeppelinStickSphereMultiRunLM_GaussianFitter
ZeppelinStickTortLM_Fitter
ZeppelinStickTortMultiRunLM_Fitter