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Manpage of voxel2scanner
voxel2scanner
Section: User Commands (1)
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NAME
voxel2scanner - Converts voxel-order data to scanner-order data.
SYNOPSIS
voxel2scanner
-voxels <number of voxels> -components <measurements per voxel>
[options]
DESCRIPTION
Converts voxel-order data files, used by Camino, to scanner order.
See scanner2voxel(1) for a description of these formats.
The output data type is big endian floating points.
EXAMPLES
Convert voxel-order data file VoxelOrder.Bfloat, for which the
measurement volume has size 128x128x60 and the acquisition scheme
acquires 6 measurements with b=0 and 54 diffusion-weighted
measurements, to scanner order:
voxel2scanner -voxels 983040 -components 60 < VoxelOrder.Bfloat > ScannerOrder.img
Equivalently:
voxel2scanner -voxels 983040 -components 60 -inputfile VoxelOrder.Bfloat > ScannerOrder.img
Fit the diffusion tensor to the scanner-order data in ScannerOrder.img,
assuming the acquisition scheme is specified in A.scheme, and convert
the output to scanner order:
scanner2voxel -voxels 983040 -components 60 < ScannerOrder.img | dtfit - A.scheme -nonlinear | voxel2scanner -voxels 983040 -components 8 -inputdatatype double > DiffTensorA.img
OPTIONS
- -voxels <number of voxels>
-
The number of voxels in the input data.
- -components <number of measurements>
-
The number of measurements per voxel.
- -inputfile <input filename>
-
The name of the input file.
- -inputdatatype <data type of input>
-
Specifies the data type of the input file. The data type can be any
of the following strings: "char", "short", "int", "long", "float" or
"double".
- -outputdatatype <data type of output>
-
Specifies the data type of the output data. The data type can be any
of the following strings: "char", "short", "int", "long", "float" or
"double".
AUTHORS
Daniel Alexander <camino@cs.ucl.ac.uk>
SEE ALSO
scanner2voxel(1)
BUGS
Index
- NAME
-
- SYNOPSIS
-
- DESCRIPTION
-
- EXAMPLES
-
- OPTIONS
-
- AUTHORS
-
- SEE ALSO
-
- BUGS
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