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V

valueAt(Point3D) - Method in class misc.ScalarImage
If the point is outside the image array, the function returns zero.
valueOf(String) - Static method in enum apps.StreamlineTractography.ImageType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum data.compartments.CompartmentType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum fitters.FitAlgorithm
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum fitters.FitModel
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum fitters.NoiseModel
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum imaging.MetaImageHeader.AnatomicalOrientation
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum imaging.MetaImageHeader.DataType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum imaging.MetaImageHeader.ObjectType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum inverters.InversionIndex
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum inverters.ModelIndex
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum models.compartments.CompartmentType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum simulation.dynamics.StepAmenderFactory.AmenderType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum simulation.dynamics.StepGeneratorFactory.StepType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum simulation.geometry.elements.CylinderFactory.CylType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum simulation.geometry.substrates.SubstrateFactory.SubstrateType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum simulation.measurement.ScanFactory.ScanType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum simulation.measurement.StatisticsModuleFactory.StatsModuleType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum tractography.DataModel
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum tractography.PICoPDF
Returns the enum constant of this type with the specified name.
values() - Static method in enum apps.StreamlineTractography.ImageType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum data.compartments.CompartmentType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum fitters.FitAlgorithm
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum fitters.FitModel
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum fitters.NoiseModel
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum imaging.MetaImageHeader.AnatomicalOrientation
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum imaging.MetaImageHeader.DataType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum imaging.MetaImageHeader.ObjectType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum inverters.InversionIndex
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum inverters.ModelIndex
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum models.compartments.CompartmentType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum simulation.dynamics.StepAmenderFactory.AmenderType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum simulation.dynamics.StepGeneratorFactory.StepType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum simulation.geometry.elements.CylinderFactory.CylType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum simulation.geometry.substrates.SubstrateFactory.SubstrateType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum simulation.measurement.ScanFactory.ScanType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum simulation.measurement.StatisticsModuleFactory.StatsModuleType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum tractography.DataModel
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum tractography.PICoPDF
Returns an array containing the constants of this enum type, in the order they are declared.
valuesAt(Point3D[]) - Method in class misc.ScalarImage
 
valuesAt(Voxel[]) - Method in class misc.ScalarImage
 
valuesPerPosition() - Method in class tractography.LookupTable
The length of the array returned by getValues.
var(double[], double) - Static method in class tools.ArrayOps
Returns the variance of the values in the array.
variables() - Method in class numerics.PolynomialFunction
 
variables() - Method in class numerics.PolynomialFunction1D
 
variables() - Method in class numerics.PolynomialFunction2D
 
Vector3D - Class in numerics
Purpose: To encapsulate 3D cartesian vector.
Vector3D() - Constructor for class numerics.Vector3D
 
Vector3D(double, double, double) - Constructor for class numerics.Vector3D
 
Vector3D(double[]) - Constructor for class numerics.Vector3D
 
Vector3D(Vector3D) - Constructor for class numerics.Vector3D
 
Vector3D(Point3D, Point3D) - Constructor for class numerics.Vector3D
Construct vector (p1 - p0) from two points.
vectorFromSPC(double, double, double) - Static method in class numerics.Vector3D
Get a Cartesian vector from the spherical polar coordinates.
VectorLinearInterpolator - Class in tractography
Provides interpolated measurements of the principal direction at any point within the dataset.
VectorLinearInterpolator(TractographyImage) - Constructor for class tractography.VectorLinearInterpolator
Construct an interpolator.
VERSION - Static variable in class imaging.B_VectorScheme
String that identifies this scheme version in the scheme file.
VERSION - Static variable in class imaging.RectGradSteTanScheme
String that identifies this scheme version in the scheme file.
VERSION - Static variable in class imaging.RectGradTRSE_Scheme
String that identifies this scheme version in the scheme file.
volFrac - Static variable in class tools.CL_Initializer
volume fraction
vox_offset - Variable in class imaging.AnalyzeHeader
 
vox_offset - Variable in class imaging.Nifti1Dataset
 
Voxel - Class in tractography
 
Voxel(int, int, int) - Constructor for class tractography.Voxel
 
VoxelClassify - Class in apps
Purpose: Classifies each voxel as background, isotropic, anisotropic Gaussian or non-Gaussian.
VoxelClassify(String[]) - Constructor for class apps.VoxelClassify
Output manager
voxelClassMap - Static variable in class tools.CL_Initializer
Name of file containing voxel classification.
voxelContains(double[]) - Method in class simulation.geometry.substrates.MeshSubstrate
check is a given walker is in the voxel.
voxelContains(double[]) - Method in class simulation.geometry.substrates.Substrate
checks if a walker is in the current voxel.
voxelDims - Static variable in class tools.CL_Initializer
Voxel size in millimeters
VoxelList - Class in tractography
Holds a streamline as a list of voxels.
VoxelList(Voxel[], int, double, double, double, Vector3D, Vector3D) - Constructor for class tractography.VoxelList
 
VoxelMean - Class in apps
module that takes several voxels of data and generates the mean in each direction.
VoxelMean() - Constructor for class apps.VoxelMean
 
VoxelOrderDataSource - Class in data
Purpose: Source of voxel order data from a data file or standard input stream.
VoxelOrderDataSource(String, int, String) - Constructor for class data.VoxelOrderDataSource
Constructor requires the filename, the number of values in each voxel and the data type.
VoxelOrderDataSource(String, int, String, boolean) - Constructor for class data.VoxelOrderDataSource
 
VoxelOrderDataSource(String, int, String, boolean, int) - Constructor for class data.VoxelOrderDataSource
 
VoxelOrderDataSource(EndianNeutralDataInputStream, int, String) - Constructor for class data.VoxelOrderDataSource
Initialize a VoxelOrderDataSource from an input stream.
VoxelOrderDW_DataSource - Class in data
Purpose: Source of voxel order diffusion-weighted MRI data from a data file or standard input.
VoxelOrderDW_DataSource(String, String, DW_Scheme) - Constructor for class data.VoxelOrderDW_DataSource
Constructor requires the filename, the number of values in each voxel and the data type.
VoxelOrderScaledDataSource - Class in data
Like a regular VoxelOrderDataSource, except that it scales the input data.
VoxelOrderScaledDataSource(String, int, String, boolean, int, double, double) - Constructor for class data.VoxelOrderScaledDataSource
Constructor requires the filename, the number of values in each voxel and the data type.
VoxelToScanner - Class in apps
Purpose: Converts voxel order data to scanner order.
VoxelToScanner(String[]) - Constructor for class apps.VoxelToScanner
 
VoxelwiseStatisticalImage - Interface in misc
Interface for images that compute statistics on the values in each voxel.
voxToObjects - Variable in class simulation.geometry.substrates.Substrate
map of subvoxels to arrays of substrate objects for spatial optimisation
VTK_Streamlines - Class in apps
Converts streamlines from raw format to VTK polylines (in binary form).
VTK_Streamlines() - Constructor for class apps.VTK_Streamlines
 
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