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Z

z - Variable in class numerics.Point3D
 
z - Variable in class numerics.Vector3D
 
z - Variable in class tractography.Voxel
 
Z_AXIS - Static variable in class numerics.Rotations
 
zDataDim() - Method in class imaging.AnalyzeHeader
 
zDataDim() - Method in class imaging.ImageHeader
Analyze : depth
Meta : DimSize[2]
NIFTI-1 : ZDIM
zDataDim() - Method in class imaging.MetaImageHeader
 
zDataDim() - Method in class imaging.Nifti1Dataset
 
zDataDim() - Method in class tractography.TractographyImage
Size of image in z dimension.
ZDIM - Variable in class imaging.Nifti1Dataset
 
Zeppelin - Class in data.compartments
 
Zeppelin() - Constructor for class data.compartments.Zeppelin
constructor.
Zeppelin - Class in models.compartments
 
Zeppelin() - Constructor for class models.compartments.Zeppelin
constructor.
ZeppelinCylinderAstrocylindersLM_Fitter - Class in fitters
Purpose: Fits the zeppelincylinderastrocylinders model using one run of a Levenburg Marquardt.
ZeppelinCylinderAstrocylindersLM_Fitter() - Constructor for class fitters.ZeppelinCylinderAstrocylindersLM_Fitter
Default constructor required for derived classes.
ZeppelinCylinderAstrocylindersLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderAstrocylindersLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderAstrocylindersMultiRunLM_Fitter - Class in fitters
Purpose: Fits the zeppelincylinderastrocylinders model using multiple runs of a Levenburg Marquardt.
ZeppelinCylinderAstrocylindersMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderAstrocylindersMultiRunLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderAstrosticksLM_Fitter - Class in fitters
Purpose: Fits the zeppelincylinderastrosticks model using one run of a Levenburg Marquardt.
ZeppelinCylinderAstrosticksLM_Fitter() - Constructor for class fitters.ZeppelinCylinderAstrosticksLM_Fitter
Default constructor required for derived classes.
ZeppelinCylinderAstrosticksLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderAstrosticksLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderAstrosticksMultiRunLM_Fitter - Class in fitters
Purpose: Fits the zeppelincylinderastrosticks model using multiple runs of a Levenburg Marquardt.
ZeppelinCylinderAstrosticksMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderAstrosticksMultiRunLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderDotCSF_LM_DirectFitter - Class in fitters
Purpose: Fits the zeppelin-cylinder-dot model, with additional compartment for CSF contamination, using one run of a Levenburg Marquardt.
ZeppelinCylinderDotCSF_LM_DirectFitter() - Constructor for class fitters.ZeppelinCylinderDotCSF_LM_DirectFitter
Default constructor required for derived classes.
ZeppelinCylinderDotCSF_LM_DirectFitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderDotCSF_LM_DirectFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderDotCSF_LM_DirectFitter(DW_Scheme, String[], double[]) - Constructor for class fitters.ZeppelinCylinderDotCSF_LM_DirectFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderDotCSF_MultiRunLM_DirectFitter - Class in fitters
Purpose: Fits the zeppelin-cylinder-dot-CSF model using multiple runs of a Levenburg Marquardt and a specified noise model.
ZeppelinCylinderDotCSF_MultiRunLM_DirectFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderDotCSF_MultiRunLM_DirectFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderDotLM_DirectFitter - Class in fitters
Purpose: Fits the zeppelin-cylinder-dot model using one run of a Levenburg Marquardt.
ZeppelinCylinderDotLM_DirectFitter() - Constructor for class fitters.ZeppelinCylinderDotLM_DirectFitter
Default constructor required for derived classes.
ZeppelinCylinderDotLM_DirectFitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderDotLM_DirectFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderDotLM_DirectFitter(DW_Scheme, String[], double[]) - Constructor for class fitters.ZeppelinCylinderDotLM_DirectFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderDotLM_Fitter - Class in fitters
Purpose: Fits the zeppelincylinderdot model using one run of a Levenburg Marquardt.
ZeppelinCylinderDotLM_Fitter() - Constructor for class fitters.ZeppelinCylinderDotLM_Fitter
Default constructor required for derived classes.
ZeppelinCylinderDotLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderDotLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderDotLM_GaussianFitter - Class in fitters
Purpose: Fits the zeppelincylinderdot model using one run of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinCylinderDotLM_GaussianFitter() - Constructor for class fitters.ZeppelinCylinderDotLM_GaussianFitter
Default constructor required for derived classes.
ZeppelinCylinderDotLM_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderDotLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderDotMCMC_GaussianFitter - Class in fitters
Purpose: Fits the ball and stick model using MCMC and assuming a Gaussian noise model.
ZeppelinCylinderDotMCMC_GaussianFitter() - Constructor for class fitters.ZeppelinCylinderDotMCMC_GaussianFitter
Default constructor required for derived classes.
ZeppelinCylinderDotMCMC_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderDotMCMC_GaussianFitter
Basic constructor extracts model particulars and calls full constructor.
ZeppelinCylinderDotMCMC_GaussianFitter(DW_Scheme, String[], double[]) - Constructor for class fitters.ZeppelinCylinderDotMCMC_GaussianFitter
Constructor sets up various required objects for MCMC.
ZeppelinCylinderDotMultiRunLM_DirectFitter - Class in fitters
Purpose: Fits the zeppelin-cylinder-dot model using multiple runs of a Levenburg Marquardt and a specified noise model.
ZeppelinCylinderDotMultiRunLM_DirectFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderDotMultiRunLM_DirectFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderDotMultiRunLM_Fitter - Class in fitters
Purpose: Fits the zeppelincylinderdot model using multiple runs of a Levenburg Marquardt.
ZeppelinCylinderDotMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderDotMultiRunLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderDotMultiRunLM_GaussianFitter - Class in fitters
Purpose: Fits the zeppelincylinderdot model using multiple runs of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinCylinderDotMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderDotMultiRunLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderLM_DirectFitter - Class in fitters
Purpose: Fits the zeppelin and cylinder model using one run of a Levenburg Marquardt.
ZeppelinCylinderLM_DirectFitter() - Constructor for class fitters.ZeppelinCylinderLM_DirectFitter
Default constructor required for derived classes.
ZeppelinCylinderLM_DirectFitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderLM_DirectFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderLM_DirectFitter(DW_Scheme, String[], double[]) - Constructor for class fitters.ZeppelinCylinderLM_DirectFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderLM_Fitter - Class in fitters
Purpose: Fits the zeppelin and cylinder model using one run of a Levenburg Marquardt.
ZeppelinCylinderLM_Fitter() - Constructor for class fitters.ZeppelinCylinderLM_Fitter
Default constructor required for derived classes.
ZeppelinCylinderLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderLM_GaussianFitter - Class in fitters
Purpose: Fits the zeppelin and cylinder model using one run of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinCylinderLM_GaussianFitter() - Constructor for class fitters.ZeppelinCylinderLM_GaussianFitter
Default constructor required for derived classes.
ZeppelinCylinderLM_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderMultiRunLM_DirectFitter - Class in fitters
Purpose: Fits the zeppelin and cylinder model using multiple runs of a Levenburg Marquardt and a specified noise model.
ZeppelinCylinderMultiRunLM_DirectFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderMultiRunLM_DirectFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderMultiRunLM_Fitter - Class in fitters
Purpose: Fits the zeppelincylinder model using multiple runs of a Levenburg Marquardt.
ZeppelinCylinderMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderMultiRunLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderMultiRunLM_GaussianFitter - Class in fitters
Purpose: Fits the zeppelincylinder model using multiple runs of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinCylinderMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderMultiRunLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderSphereLM_Fitter - Class in fitters
Purpose: Fits the zeppelincylindersphere model using one run of a Levenburg Marquardt.
ZeppelinCylinderSphereLM_Fitter() - Constructor for class fitters.ZeppelinCylinderSphereLM_Fitter
Default constructor required for derived classes.
ZeppelinCylinderSphereLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderSphereLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderSphereMultiRunLM_Fitter - Class in fitters
Purpose: Fits the zeppelincylindersphere model using multiple runs of a Levenburg Marquardt.
ZeppelinCylinderSphereMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderSphereMultiRunLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderSphereMultiRunLM_GaussianFitter - Class in fitters
Purpose: Fits the zeppelincylindersphere model using multiple runs of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinCylinderSphereMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderSphereMultiRunLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderTortLM_Fitter - Class in fitters
Purpose: Fits the zeppelin and cylinder model with tortuosity approximation using one run of a Levenburg Marquardt.
ZeppelinCylinderTortLM_Fitter() - Constructor for class fitters.ZeppelinCylinderTortLM_Fitter
Default constructor required for derived classes.
ZeppelinCylinderTortLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderTortLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderTortLM_Fitter(DW_Scheme, String[], double[]) - Constructor for class fitters.ZeppelinCylinderTortLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinCylinderTortMultiRunLM_Fitter - Class in fitters
Purpose: Fits the zeppelin and cylinder model with tortuosity approximation using multiple runs of a Levenburg Marquardt and a specified noise model.
ZeppelinCylinderTortMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderTortMultiRunLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinGDRCylindersAstrocylindersLM_Fitter - Class in fitters
Purpose: Fits the zeppelin and gamma distributed radii cylinders model using one run of a Levenburg Marquardt.
ZeppelinGDRCylindersAstrocylindersLM_Fitter() - Constructor for class fitters.ZeppelinGDRCylindersAstrocylindersLM_Fitter
Default constructor required for derived classes.
ZeppelinGDRCylindersAstrocylindersLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinGDRCylindersAstrocylindersLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinGDRCylindersAstrocylindersMultiRunLM_Fitter - Class in fitters
Purpose: Fits the ballcylinderastrosticks model using multiple runs of a Levenburg Marquardt.
ZeppelinGDRCylindersAstrocylindersMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinGDRCylindersAstrocylindersMultiRunLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinGDRCylindersAstrosticksLM_Fitter - Class in fitters
Purpose: Fits the zeppelin and gamma distributed radii cylinders model using one run of a Levenburg Marquardt.
ZeppelinGDRCylindersAstrosticksLM_Fitter() - Constructor for class fitters.ZeppelinGDRCylindersAstrosticksLM_Fitter
Default constructor required for derived classes.
ZeppelinGDRCylindersAstrosticksLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinGDRCylindersAstrosticksLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinGDRCylindersAstrosticksLM_GaussianFitter - Class in fitters
Purpose: Fits the zeppelin and gamma distributed radii cylinders model using one run of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinGDRCylindersAstrosticksLM_GaussianFitter() - Constructor for class fitters.ZeppelinGDRCylindersAstrosticksLM_GaussianFitter
Default constructor required for derived classes.
ZeppelinGDRCylindersAstrosticksLM_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinGDRCylindersAstrosticksLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinGDRCylindersAstrosticksMultiRunLM_Fitter - Class in fitters
Purpose: Fits the ballcylinderastrosticks model using multiple runs of a Levenburg Marquardt.
ZeppelinGDRCylindersAstrosticksMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinGDRCylindersAstrosticksMultiRunLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinGDRCylindersAstrosticksMultiRunLM_GaussianFitter - Class in fitters
Purpose: Fits the ballcylinderastrosticks model using multiple runs of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinGDRCylindersAstrosticksMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinGDRCylindersAstrosticksMultiRunLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinGDRCylindersDotLM_Fitter - Class in fitters
Purpose: Fits the zeppelin and gamma distributed radii cylinders model using one run of a Levenburg Marquardt.
ZeppelinGDRCylindersDotLM_Fitter() - Constructor for class fitters.ZeppelinGDRCylindersDotLM_Fitter
Default constructor required for derived classes.
ZeppelinGDRCylindersDotLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinGDRCylindersDotLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinGDRCylindersDotLM_GaussianFitter - Class in fitters
Purpose: Fits the zeppelin and gamma distributed radii cylinders model using one run of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinGDRCylindersDotLM_GaussianFitter() - Constructor for class fitters.ZeppelinGDRCylindersDotLM_GaussianFitter
Default constructor required for derived classes.
ZeppelinGDRCylindersDotLM_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinGDRCylindersDotLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinGDRCylindersDotMultiRunLM_Fitter - Class in fitters
Purpose: Fits the ZeppelinGDRCylindersDot model using multiple runs of a Levenburg Marquardt.
ZeppelinGDRCylindersDotMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinGDRCylindersDotMultiRunLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinGDRCylindersDotMultiRunLM_GaussianFitter - Class in fitters
Purpose: Fits the ZeppelinGDRCylindersDot model using multiple runs of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinGDRCylindersDotMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinGDRCylindersDotMultiRunLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinGDRCylindersLM_Fitter - Class in fitters
Purpose: Fits the zeppelin and gamma distributed radii cylinders model using one run of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinGDRCylindersLM_Fitter() - Constructor for class fitters.ZeppelinGDRCylindersLM_Fitter
Default constructor required for derived classes.
ZeppelinGDRCylindersLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinGDRCylindersLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinGDRCylindersLM_GaussianFitter - Class in fitters
Purpose: Fits the zeppelin and gamma distributed radii cylinders model using one run of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinGDRCylindersLM_GaussianFitter() - Constructor for class fitters.ZeppelinGDRCylindersLM_GaussianFitter
Default constructor required for derived classes.
ZeppelinGDRCylindersLM_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinGDRCylindersLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinGDRCylindersMultiRunLM_Fitter - Class in fitters
Purpose: Fits the ZeppelinGDRCylinders model using multiple runs of a Levenburg Marquardt.
ZeppelinGDRCylindersMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinGDRCylindersMultiRunLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinGDRCylindersMultiRunLM_GaussianFitter - Class in fitters
Purpose: Fits the ZeppelinGDRCylinders model using multiple runs of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinGDRCylindersMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinGDRCylindersMultiRunLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinGDRCylindersSphereLM_Fitter - Class in fitters
Purpose: Fits the zeppelin and gamma distributed radii cylinders and sphere model using one run of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinGDRCylindersSphereLM_Fitter() - Constructor for class fitters.ZeppelinGDRCylindersSphereLM_Fitter
Default constructor required for derived classes.
ZeppelinGDRCylindersSphereLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinGDRCylindersSphereLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinGDRCylindersSphereLM_GaussianFitter - Class in fitters
Purpose: Fits the zeppelin and gamma distributed radii cylinders and sphere model using one run of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinGDRCylindersSphereLM_GaussianFitter() - Constructor for class fitters.ZeppelinGDRCylindersSphereLM_GaussianFitter
Default constructor required for derived classes.
ZeppelinGDRCylindersSphereLM_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinGDRCylindersSphereLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinGDRCylindersSphereMultiRunLM_Fitter - Class in fitters
Purpose: Fits the ZeppelinGDRCylindersSphere model using multiple runs of a Levenburg Marquard.
ZeppelinGDRCylindersSphereMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinGDRCylindersSphereMultiRunLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinGDRCylindersSphereMultiRunLM_GaussianFitter - Class in fitters
Purpose: Fits the ZeppelinGDRCylindersSphere model using multiple runs of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinGDRCylindersSphereMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinGDRCylindersSphereMultiRunLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickAstrocylindersLM_Fitter - Class in fitters
Purpose: Fits the zeppelinstick and astrocylinders model using one run of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinStickAstrocylindersLM_Fitter() - Constructor for class fitters.ZeppelinStickAstrocylindersLM_Fitter
Default constructor required for derived classes.
ZeppelinStickAstrocylindersLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickAstrocylindersLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickAstrocylindersLM_GaussianFitter - Class in fitters
Purpose: Fits the zeppelinstick and astrocylinders model using one run of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinStickAstrocylindersLM_GaussianFitter() - Constructor for class fitters.ZeppelinStickAstrocylindersLM_GaussianFitter
Default constructor required for derived classes.
ZeppelinStickAstrocylindersLM_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickAstrocylindersLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickAstrocylindersMultiRunLM_Fitter - Class in fitters
Purpose: Fits the zeppelinstickastrocylinders model using multiple runs of a Levenburg Marquardt.
ZeppelinStickAstrocylindersMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickAstrocylindersMultiRunLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickAstrocylindersMultiRunLM_GaussianFitter - Class in fitters
Purpose: Fits the zeppelinstickastrocylinders model using multiple runs of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinStickAstrocylindersMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickAstrocylindersMultiRunLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickAstrosticksLM_Fitter - Class in fitters
Purpose: Fits the zeppelinstick and astrosticks model using one run of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinStickAstrosticksLM_Fitter() - Constructor for class fitters.ZeppelinStickAstrosticksLM_Fitter
Default constructor required for derived classes.
ZeppelinStickAstrosticksLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickAstrosticksLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickAstrosticksLM_GaussianFitter - Class in fitters
Purpose: Fits the zeppelinstick and astrosticks model using one run of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinStickAstrosticksLM_GaussianFitter() - Constructor for class fitters.ZeppelinStickAstrosticksLM_GaussianFitter
Default constructor required for derived classes.
ZeppelinStickAstrosticksLM_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickAstrosticksLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickAstrosticksMultiRunLM_Fitter - Class in fitters
Purpose: Fits the zeppelinstickastrosticks model using multiple runs of a Levenburg Marquardt.
ZeppelinStickAstrosticksMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickAstrosticksMultiRunLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickAstrosticksMultiRunLM_GaussianFitter - Class in fitters
Purpose: Fits the zeppelinstickastrosticks model using multiple runs of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinStickAstrosticksMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickAstrosticksMultiRunLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickDotLM_Fitter - Class in fitters
Purpose: Fits the zeppelinstick and dot model using one run of a Levenburg Marquardt.
ZeppelinStickDotLM_Fitter() - Constructor for class fitters.ZeppelinStickDotLM_Fitter
Default constructor required for derived classes.
ZeppelinStickDotLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickDotLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickDotLM_GaussianFitter - Class in fitters
Purpose: Fits the zeppelinstick and dot model using one run of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinStickDotLM_GaussianFitter() - Constructor for class fitters.ZeppelinStickDotLM_GaussianFitter
Default constructor required for derived classes.
ZeppelinStickDotLM_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickDotLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickDotMultiRunLM_Fitter - Class in fitters
Purpose: Fits the zeppelinstickdot model using multiple runs of a Levenburg Marquardt.
ZeppelinStickDotMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickDotMultiRunLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickDotMultiRunLM_GaussianFitter - Class in fitters
Purpose: Fits the zeppelinstickdot model using multiple runs of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinStickDotMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickDotMultiRunLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickLM_DirectFitter - Class in fitters
Purpose: Fits the zeppelin and stick model using one run of a Levenburg Marquardt.
ZeppelinStickLM_DirectFitter() - Constructor for class fitters.ZeppelinStickLM_DirectFitter
Default constructor required for derived classes.
ZeppelinStickLM_DirectFitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickLM_DirectFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickLM_DirectFitter(DW_Scheme, String[], double[]) - Constructor for class fitters.ZeppelinStickLM_DirectFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickLM_Fitter - Class in fitters
Purpose: Fits the zeppelin and stick model using one run of a Levenburg Marquardt.
ZeppelinStickLM_Fitter() - Constructor for class fitters.ZeppelinStickLM_Fitter
Default constructor required for derived classes.
ZeppelinStickLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickLM_GaussianFitter - Class in fitters
Purpose: Fits the zeppelin and stick model using one run of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinStickLM_GaussianFitter() - Constructor for class fitters.ZeppelinStickLM_GaussianFitter
Default constructor required for derived classes.
ZeppelinStickLM_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickMultiRunLM_DirectFitter - Class in fitters
Purpose: Fits the zeppelin and stick model using multiple runs of a Levenburg Marquardt and a specified noise model.
ZeppelinStickMultiRunLM_DirectFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickMultiRunLM_DirectFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickMultiRunLM_Fitter - Class in fitters
Purpose: Fits the zeppelin and stick model using multiple runs of a Levenburg Marquardt.
ZeppelinStickMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickMultiRunLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickMultiRunLM_GaussianFitter - Class in fitters
Purpose: Fits the zeppelin and stick model using multiple runs of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinStickMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickMultiRunLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickSphereLM_Fitter - Class in fitters
Purpose: Fits the zeppelinstick and sphere model using one run of a Levenburg Marquardt.
ZeppelinStickSphereLM_Fitter() - Constructor for class fitters.ZeppelinStickSphereLM_Fitter
Default constructor required for derived classes.
ZeppelinStickSphereLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickSphereLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickSphereLM_GaussianFitter - Class in fitters
Purpose: Fits the zeppelinstick and sphere model using one run of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinStickSphereLM_GaussianFitter() - Constructor for class fitters.ZeppelinStickSphereLM_GaussianFitter
Default constructor required for derived classes.
ZeppelinStickSphereLM_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickSphereLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickSphereMultiRunLM_Fitter - Class in fitters
Purpose: Fits the zeppelinsticksphere model using multiple runs of a Levenburg Marquardt.
ZeppelinStickSphereMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickSphereMultiRunLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickSphereMultiRunLM_GaussianFitter - Class in fitters
Purpose: Fits the zeppelinsticksphere model using multiple runs of a Levenburg Marquardt and assuming a Gaussian noise model.
ZeppelinStickSphereMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickSphereMultiRunLM_GaussianFitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickTortLM_Fitter - Class in fitters
Purpose: Fits the zeppelin and stick model predicting zeppelin perpendicular diffusivity from the volume fraction and using one run of a Levenburg Marquardt.
ZeppelinStickTortLM_Fitter() - Constructor for class fitters.ZeppelinStickTortLM_Fitter
Default constructor required for derived classes.
ZeppelinStickTortLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickTortLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickTortLM_Fitter(DW_Scheme, String[], double[]) - Constructor for class fitters.ZeppelinStickTortLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
ZeppelinStickTortMultiRunLM_Fitter - Class in fitters
Purpose: Fits the zeppelin and stick model with tortuosity approximation using multiple runs of a Levenburg Marquardt and a specified noise model.
ZeppelinStickTortMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickTortMultiRunLM_Fitter
Constructor implements the mapping between model and optimized parameters in the Codec object.
zero(int) - Method in class imaging.DW_Scheme
Determines whether a measurement has zero diffusion weighting.
zMax() - Method in class tractography.LookupTable
 
zMin() - Method in class tractography.LookupTable
 
zStep() - Method in class tractography.LookupTable
 
zVoxelDim() - Method in class imaging.AnalyzeHeader
 
zVoxelDim() - Method in class imaging.ImageHeader
Analyze : pixeldepth
(may be negative).
zVoxelDim() - Method in class imaging.MetaImageHeader
 
zVoxelDim() - Method in class imaging.Nifti1Dataset
 
zVoxelDim() - Method in class tractography.TractographyImage
Size (mm) of z voxel length.
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