Package | Description |
---|---|
data | |
data.compartments | |
imaging | |
simulation | |
tools |
Modifier and Type | Class and Description |
---|---|
class |
BootstrapDataSynthesizer
Source of bootstrap data.
|
class |
BootstrapDataSynthFromInput
Source of bootstrap data.
|
class |
BootstrapDataSynthFromSimulationInput
Source of bootstrap data.
|
class |
DataSynthesizer
Purpose:
Source of synthetic data.
|
class |
DataSynthFromBallStickInput
Purpose:
Class for synthesizing diffusion weighted data from ball and
stick model parameters read from an input stream.
|
class |
DataSynthFromDT_Input
Purpose:
Class for synthesizing diffusion weighted data from diffusion tensor
parameters read from an input stream.
|
class |
DataSynthFromInput
Purpose:
General class for synthesizing diffusion weighted data from model
parameters read from an input stream.
|
class |
DataSynthFromMultiTensorInput
Purpose:
Class for synthesizing diffusion weighted data from multi-tensor
parameters read from an input stream.
|
class |
DataSynthFromThreeTensorInput
Purpose:
Class for synthesizing diffusion weighted data from three-tensor
parameters read from an input stream.
|
class |
DataSynthFromTwoTensorInput
Purpose:
Class for synthesizing diffusion weighted data from two-tensor
parameters read from an input stream.
|
class |
ExternalDataSource
Purpose:
Base class for data sources of data from files and input streams.
|
class |
MatlabArrayDataSource
Purpose:
Base class for data sources of data from files and input streams.
|
class |
ScannerOrderDataSource
Purpose:
Source of data from a scanner-order data file or standard input stream.
|
class |
ScannerOrderScaledDataSource
Like a regular ScannerOrderDataSource, except that it scales the input data.
|
class |
SyntheticBootstrapper
Purpose:
Source of synthetic data bootstrapped from a small number of samples.
|
class |
VoxelOrderDataSource
Purpose:
Source of voxel order data from a data file or standard input stream.
|
class |
VoxelOrderDW_DataSource
Purpose:
Source of voxel order diffusion-weighted MRI data from a data file or
standard input.
|
class |
VoxelOrderScaledDataSource
Like a regular VoxelOrderDataSource, except that it scales the input data.
|
class |
WildBootstrapDataSynth
Provides wild bootstrap data.
|
class |
WildBS_DT_DataSynth
Provides wild bootstrap data based on diffusion tensor reconstruction.
|
Constructor and Description |
---|
WildBootstrapDataSynth(DataSource input,
DW_Scheme scheme,
int samples) |
WildBootstrapDataSynth(DataSource input,
DW_Scheme scheme,
int samples,
int seed) |
WildBootstrapDataSynth(DataSource input,
DW_Scheme scheme,
int samples,
java.util.Random ran)
This is the constructor that actually does everything, so ensure that this eventually gets
called.
|
WildBS_DT_DataSynth(DataSource input,
DW_Scheme scheme,
int samples) |
WildBS_DT_DataSynth(DataSource input,
DW_Scheme scheme,
int samples,
int seed) |
WildBS_DT_DataSynth(DataSource input,
DW_Scheme scheme,
int samples,
java.util.Random ran) |
Modifier and Type | Class and Description |
---|---|
class |
CompartmentModel
generalised compartment model for generating data from a weighted
sum of two or more compartments.
|
Modifier and Type | Method and Description |
---|---|
DataSource |
Nifti1Dataset.getImageDataSource()
Get the data source for this header.
|
DataSource |
MetaImageHeader.getImageDataSource() |
abstract DataSource |
ImageHeader.getImageDataSource()
Gets the image data source, scaling applied if applicable.
|
DataSource |
AnalyzeHeader.getImageDataSource()
Gets a data source from a Analyze header.
|
Modifier and Type | Class and Description |
---|---|
class |
DiffusionSimulation
top level class in diffusion simulation.
|
Modifier and Type | Field and Description |
---|---|
static DataSource |
CL_Initializer.bgMask
The background mask.
|
static DataSource |
CL_Initializer.data
The data source to process.
|
Modifier and Type | Method and Description |
---|---|
static DataSource |
CL_Initializer.getDataSynthesizer(ModelPDF p,
DW_Scheme imPars,
double SNR,
int numVoxels,
int seed,
int bootstrap)
Creates the source of data from options specified on the command line.
|
Modifier and Type | Method and Description |
---|---|
static void |
CL_Initializer.setDataSource(DataSource newDataSource)
Specifies a specific data source object.
|
static void |
CL_Initializer.setMaskSource(DataSource newMaskSource)
Specifies a specific data source object for the background mask.
|