- z - Variable in class numerics.Point3D
-
- z - Variable in class numerics.Vector3D
-
- z - Variable in class tractography.Voxel
-
- Z_AXIS - Static variable in class numerics.Rotations
-
- zDataDim() - Method in class imaging.AnalyzeHeader
-
- zDataDim() - Method in class imaging.ImageHeader
-
Analyze : depth
Meta : DimSize[2]
NIFTI-1 : ZDIM
- zDataDim() - Method in class imaging.MetaImageHeader
-
- zDataDim() - Method in class imaging.Nifti1Dataset
-
- zDataDim() - Method in class tractography.TractographyImage
-
Size of image in z dimension.
- ZDIM - Variable in class imaging.Nifti1Dataset
-
- Zeppelin - Class in data.compartments
-
- Zeppelin() - Constructor for class data.compartments.Zeppelin
-
constructor.
- Zeppelin - Class in models.compartments
-
- Zeppelin() - Constructor for class models.compartments.Zeppelin
-
constructor.
- ZeppelinCylinderAstrocylindersLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelincylinderastrocylinders model using one run of a
Levenburg Marquardt.
- ZeppelinCylinderAstrocylindersLM_Fitter() - Constructor for class fitters.ZeppelinCylinderAstrocylindersLM_Fitter
-
Default constructor required for derived classes.
- ZeppelinCylinderAstrocylindersLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderAstrocylindersLM_Fitter
-
Constructor implements the mapping between model and optimized parameters
in the Codec object.
- ZeppelinCylinderAstrocylindersMultiRunLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelincylinderastrocylinders model using multiple runs of a Levenburg
Marquardt.
- ZeppelinCylinderAstrocylindersMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderAstrocylindersMultiRunLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinCylinderAstrosticksLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelincylinderastrosticks model using one run of a Levenburg
Marquardt.
- ZeppelinCylinderAstrosticksLM_Fitter() - Constructor for class fitters.ZeppelinCylinderAstrosticksLM_Fitter
-
Default constructor required for derived classes.
- ZeppelinCylinderAstrosticksLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderAstrosticksLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinCylinderAstrosticksMultiRunLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelincylinderastrosticks model using multiple runs of a Levenburg
Marquardt.
- ZeppelinCylinderAstrosticksMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderAstrosticksMultiRunLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinCylinderDotCSF_LM_DirectFitter - Class in fitters
-
Purpose:
Fits the zeppelin-cylinder-dot model, with additional
compartment for CSF contamination, using one run of a Levenburg
Marquardt.
- ZeppelinCylinderDotCSF_LM_DirectFitter() - Constructor for class fitters.ZeppelinCylinderDotCSF_LM_DirectFitter
-
Default constructor required for derived classes.
- ZeppelinCylinderDotCSF_LM_DirectFitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderDotCSF_LM_DirectFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinCylinderDotCSF_LM_DirectFitter(DW_Scheme, String[], double[]) - Constructor for class fitters.ZeppelinCylinderDotCSF_LM_DirectFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinCylinderDotCSF_MultiRunLM_DirectFitter - Class in fitters
-
Purpose:
Fits the zeppelin-cylinder-dot-CSF model using multiple runs of
a Levenburg Marquardt and a specified noise model.
- ZeppelinCylinderDotCSF_MultiRunLM_DirectFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderDotCSF_MultiRunLM_DirectFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinCylinderDotLM_DirectFitter - Class in fitters
-
Purpose:
Fits the zeppelin-cylinder-dot model using one run of a Levenburg
Marquardt.
- ZeppelinCylinderDotLM_DirectFitter() - Constructor for class fitters.ZeppelinCylinderDotLM_DirectFitter
-
Default constructor required for derived classes.
- ZeppelinCylinderDotLM_DirectFitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderDotLM_DirectFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinCylinderDotLM_DirectFitter(DW_Scheme, String[], double[]) - Constructor for class fitters.ZeppelinCylinderDotLM_DirectFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinCylinderDotLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelincylinderdot model using one run of a Levenburg
Marquardt.
- ZeppelinCylinderDotLM_Fitter() - Constructor for class fitters.ZeppelinCylinderDotLM_Fitter
-
Default constructor required for derived classes.
- ZeppelinCylinderDotLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderDotLM_Fitter
-
Constructor implements the mapping between model and optimized parameters
in the Codec object.
- ZeppelinCylinderDotLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the zeppelincylinderdot model using one run of a Levenburg
Marquardt and assuming a Gaussian noise model.
- ZeppelinCylinderDotLM_GaussianFitter() - Constructor for class fitters.ZeppelinCylinderDotLM_GaussianFitter
-
Default constructor required for derived classes.
- ZeppelinCylinderDotLM_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderDotLM_GaussianFitter
-
Constructor implements the mapping between model and optimized parameters
in the Codec object.
- ZeppelinCylinderDotMCMC_GaussianFitter - Class in fitters
-
Purpose:
Fits the ball and stick model using MCMC and assuming a
Gaussian noise model.
- ZeppelinCylinderDotMCMC_GaussianFitter() - Constructor for class fitters.ZeppelinCylinderDotMCMC_GaussianFitter
-
Default constructor required for derived classes.
- ZeppelinCylinderDotMCMC_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderDotMCMC_GaussianFitter
-
Basic constructor extracts model particulars and calls
full constructor.
- ZeppelinCylinderDotMCMC_GaussianFitter(DW_Scheme, String[], double[]) - Constructor for class fitters.ZeppelinCylinderDotMCMC_GaussianFitter
-
Constructor sets up various required objects for MCMC.
- ZeppelinCylinderDotMultiRunLM_DirectFitter - Class in fitters
-
Purpose:
Fits the zeppelin-cylinder-dot model using multiple runs of a Levenburg
Marquardt and a specified noise model.
- ZeppelinCylinderDotMultiRunLM_DirectFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderDotMultiRunLM_DirectFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinCylinderDotMultiRunLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelincylinderdot model using multiple runs of a Levenburg
Marquardt.
- ZeppelinCylinderDotMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderDotMultiRunLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinCylinderDotMultiRunLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the zeppelincylinderdot model using multiple runs of a Levenburg
Marquardt and assuming a Gaussian noise model.
- ZeppelinCylinderDotMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderDotMultiRunLM_GaussianFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinCylinderLM_DirectFitter - Class in fitters
-
Purpose:
Fits the zeppelin and cylinder model using one run of a Levenburg
Marquardt.
- ZeppelinCylinderLM_DirectFitter() - Constructor for class fitters.ZeppelinCylinderLM_DirectFitter
-
Default constructor required for derived classes.
- ZeppelinCylinderLM_DirectFitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderLM_DirectFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinCylinderLM_DirectFitter(DW_Scheme, String[], double[]) - Constructor for class fitters.ZeppelinCylinderLM_DirectFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinCylinderLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelin and cylinder model using one run of a Levenburg
Marquardt.
- ZeppelinCylinderLM_Fitter() - Constructor for class fitters.ZeppelinCylinderLM_Fitter
-
Default constructor required for derived classes.
- ZeppelinCylinderLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderLM_Fitter
-
Constructor implements the mapping between model and optimized parameters
in the Codec object.
- ZeppelinCylinderLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the zeppelin and cylinder model using one run of a Levenburg
Marquardt and assuming a Gaussian noise model.
- ZeppelinCylinderLM_GaussianFitter() - Constructor for class fitters.ZeppelinCylinderLM_GaussianFitter
-
Default constructor required for derived classes.
- ZeppelinCylinderLM_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderLM_GaussianFitter
-
Constructor implements the mapping between model and optimized parameters
in the Codec object.
- ZeppelinCylinderMultiRunLM_DirectFitter - Class in fitters
-
Purpose:
Fits the zeppelin and cylinder model using multiple runs of a Levenburg
Marquardt and a specified noise model.
- ZeppelinCylinderMultiRunLM_DirectFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderMultiRunLM_DirectFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinCylinderMultiRunLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelincylinder model using multiple runs of a Levenburg
Marquardt.
- ZeppelinCylinderMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderMultiRunLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinCylinderMultiRunLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the zeppelincylinder model using multiple runs of a Levenburg
Marquardt and assuming a Gaussian noise model.
- ZeppelinCylinderMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderMultiRunLM_GaussianFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinCylinderSphereLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelincylindersphere model using one run of a Levenburg
Marquardt.
- ZeppelinCylinderSphereLM_Fitter() - Constructor for class fitters.ZeppelinCylinderSphereLM_Fitter
-
Default constructor required for derived classes.
- ZeppelinCylinderSphereLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderSphereLM_Fitter
-
Constructor implements the mapping between model and optimized parameters
in the Codec object.
- ZeppelinCylinderSphereMultiRunLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelincylindersphere model using multiple runs of a Levenburg
Marquardt.
- ZeppelinCylinderSphereMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderSphereMultiRunLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinCylinderSphereMultiRunLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the zeppelincylindersphere model using multiple runs of a Levenburg
Marquardt and assuming a Gaussian noise model.
- ZeppelinCylinderSphereMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderSphereMultiRunLM_GaussianFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinCylinderTortLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelin and cylinder model with tortuosity
approximation using one run of a Levenburg
Marquardt.
- ZeppelinCylinderTortLM_Fitter() - Constructor for class fitters.ZeppelinCylinderTortLM_Fitter
-
Default constructor required for derived classes.
- ZeppelinCylinderTortLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinCylinderTortLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinCylinderTortLM_Fitter(DW_Scheme, String[], double[]) - Constructor for class fitters.ZeppelinCylinderTortLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinCylinderTortMultiRunLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelin and cylinder model with tortuosity approximation
using multiple runs of a Levenburg
Marquardt and a specified noise model.
- ZeppelinCylinderTortMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinCylinderTortMultiRunLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinGDRCylindersAstrocylindersLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelin and gamma distributed radii cylinders model using one run of a Levenburg Marquardt.
- ZeppelinGDRCylindersAstrocylindersLM_Fitter() - Constructor for class fitters.ZeppelinGDRCylindersAstrocylindersLM_Fitter
-
Default constructor required for derived classes.
- ZeppelinGDRCylindersAstrocylindersLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinGDRCylindersAstrocylindersLM_Fitter
-
Constructor implements the mapping between model and optimized parameters
in the Codec object.
- ZeppelinGDRCylindersAstrocylindersMultiRunLM_Fitter - Class in fitters
-
Purpose:
Fits the ballcylinderastrosticks model using multiple runs of a Levenburg
Marquardt.
- ZeppelinGDRCylindersAstrocylindersMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinGDRCylindersAstrocylindersMultiRunLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinGDRCylindersAstrosticksLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelin and gamma distributed radii cylinders model using one run of a Levenburg Marquardt.
- ZeppelinGDRCylindersAstrosticksLM_Fitter() - Constructor for class fitters.ZeppelinGDRCylindersAstrosticksLM_Fitter
-
Default constructor required for derived classes.
- ZeppelinGDRCylindersAstrosticksLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinGDRCylindersAstrosticksLM_Fitter
-
Constructor implements the mapping between model and optimized parameters
in the Codec object.
- ZeppelinGDRCylindersAstrosticksLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the zeppelin and gamma distributed radii cylinders model using one run of a Levenburg Marquardt
and assuming a Gaussian noise model.
- ZeppelinGDRCylindersAstrosticksLM_GaussianFitter() - Constructor for class fitters.ZeppelinGDRCylindersAstrosticksLM_GaussianFitter
-
Default constructor required for derived classes.
- ZeppelinGDRCylindersAstrosticksLM_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinGDRCylindersAstrosticksLM_GaussianFitter
-
Constructor implements the mapping between model and optimized parameters
in the Codec object.
- ZeppelinGDRCylindersAstrosticksMultiRunLM_Fitter - Class in fitters
-
Purpose:
Fits the ballcylinderastrosticks model using multiple runs of a Levenburg
Marquardt.
- ZeppelinGDRCylindersAstrosticksMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinGDRCylindersAstrosticksMultiRunLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinGDRCylindersAstrosticksMultiRunLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the ballcylinderastrosticks model using multiple runs of a Levenburg
Marquardt and assuming a Gaussian noise model.
- ZeppelinGDRCylindersAstrosticksMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinGDRCylindersAstrosticksMultiRunLM_GaussianFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinGDRCylindersDotLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelin and gamma distributed radii cylinders model using one run of a Levenburg Marquardt.
- ZeppelinGDRCylindersDotLM_Fitter() - Constructor for class fitters.ZeppelinGDRCylindersDotLM_Fitter
-
Default constructor required for derived classes.
- ZeppelinGDRCylindersDotLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinGDRCylindersDotLM_Fitter
-
Constructor implements the mapping between model and optimized parameters
in the Codec object.
- ZeppelinGDRCylindersDotLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the zeppelin and gamma distributed radii cylinders model using one run of a Levenburg Marquardt
and assuming a Gaussian noise model.
- ZeppelinGDRCylindersDotLM_GaussianFitter() - Constructor for class fitters.ZeppelinGDRCylindersDotLM_GaussianFitter
-
Default constructor required for derived classes.
- ZeppelinGDRCylindersDotLM_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinGDRCylindersDotLM_GaussianFitter
-
Constructor implements the mapping between model and optimized parameters
in the Codec object.
- ZeppelinGDRCylindersDotMultiRunLM_Fitter - Class in fitters
-
Purpose:
Fits the ZeppelinGDRCylindersDot model using multiple runs of a Levenburg
Marquardt.
- ZeppelinGDRCylindersDotMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinGDRCylindersDotMultiRunLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinGDRCylindersDotMultiRunLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the ZeppelinGDRCylindersDot model using multiple runs of a Levenburg
Marquardt and assuming a Gaussian noise model.
- ZeppelinGDRCylindersDotMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinGDRCylindersDotMultiRunLM_GaussianFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinGDRCylindersLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelin and gamma distributed radii cylinders model
using one run of a Levenburg Marquardt and assuming a Gaussian noise model.
- ZeppelinGDRCylindersLM_Fitter() - Constructor for class fitters.ZeppelinGDRCylindersLM_Fitter
-
Default constructor required for derived classes.
- ZeppelinGDRCylindersLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinGDRCylindersLM_Fitter
-
Constructor implements the mapping between model and optimized parameters
in the Codec object.
- ZeppelinGDRCylindersLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the zeppelin and gamma distributed radii cylinders model
using one run of a Levenburg Marquardt and assuming a Gaussian noise model.
- ZeppelinGDRCylindersLM_GaussianFitter() - Constructor for class fitters.ZeppelinGDRCylindersLM_GaussianFitter
-
Default constructor required for derived classes.
- ZeppelinGDRCylindersLM_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinGDRCylindersLM_GaussianFitter
-
Constructor implements the mapping between model and optimized parameters
in the Codec object.
- ZeppelinGDRCylindersMultiRunLM_Fitter - Class in fitters
-
Purpose:
Fits the ZeppelinGDRCylinders model using multiple runs of a Levenburg
Marquardt.
- ZeppelinGDRCylindersMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinGDRCylindersMultiRunLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinGDRCylindersMultiRunLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the ZeppelinGDRCylinders model using multiple runs of a Levenburg
Marquardt and assuming a Gaussian noise model.
- ZeppelinGDRCylindersMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinGDRCylindersMultiRunLM_GaussianFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinGDRCylindersSphereLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelin and gamma distributed radii cylinders and sphere model using one run of a Levenburg Marquardt
and assuming a Gaussian noise model.
- ZeppelinGDRCylindersSphereLM_Fitter() - Constructor for class fitters.ZeppelinGDRCylindersSphereLM_Fitter
-
Default constructor required for derived classes.
- ZeppelinGDRCylindersSphereLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinGDRCylindersSphereLM_Fitter
-
Constructor implements the mapping between model and optimized parameters
in the Codec object.
- ZeppelinGDRCylindersSphereLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the zeppelin and gamma distributed radii cylinders and sphere model using one run of a Levenburg Marquardt
and assuming a Gaussian noise model.
- ZeppelinGDRCylindersSphereLM_GaussianFitter() - Constructor for class fitters.ZeppelinGDRCylindersSphereLM_GaussianFitter
-
Default constructor required for derived classes.
- ZeppelinGDRCylindersSphereLM_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinGDRCylindersSphereLM_GaussianFitter
-
Constructor implements the mapping between model and optimized parameters
in the Codec object.
- ZeppelinGDRCylindersSphereMultiRunLM_Fitter - Class in fitters
-
Purpose:
Fits the ZeppelinGDRCylindersSphere model using multiple runs of a Levenburg
Marquard.
- ZeppelinGDRCylindersSphereMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinGDRCylindersSphereMultiRunLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinGDRCylindersSphereMultiRunLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the ZeppelinGDRCylindersSphere model using multiple runs of a Levenburg
Marquardt and assuming a Gaussian noise model.
- ZeppelinGDRCylindersSphereMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinGDRCylindersSphereMultiRunLM_GaussianFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinStickAstrocylindersLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelinstick and astrocylinders model using one run of a
Levenburg Marquardt and assuming a Gaussian noise model.
- ZeppelinStickAstrocylindersLM_Fitter() - Constructor for class fitters.ZeppelinStickAstrocylindersLM_Fitter
-
Default constructor required for derived classes.
- ZeppelinStickAstrocylindersLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickAstrocylindersLM_Fitter
-
Constructor implements the mapping between model and optimized parameters
in the Codec object.
- ZeppelinStickAstrocylindersLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the zeppelinstick and astrocylinders model using one run of a
Levenburg Marquardt and assuming a Gaussian noise model.
- ZeppelinStickAstrocylindersLM_GaussianFitter() - Constructor for class fitters.ZeppelinStickAstrocylindersLM_GaussianFitter
-
Default constructor required for derived classes.
- ZeppelinStickAstrocylindersLM_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickAstrocylindersLM_GaussianFitter
-
Constructor implements the mapping between model and optimized parameters
in the Codec object.
- ZeppelinStickAstrocylindersMultiRunLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelinstickastrocylinders model using multiple runs of a Levenburg
Marquardt.
- ZeppelinStickAstrocylindersMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickAstrocylindersMultiRunLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinStickAstrocylindersMultiRunLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the zeppelinstickastrocylinders model using multiple runs of a Levenburg
Marquardt and assuming a Gaussian noise model.
- ZeppelinStickAstrocylindersMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickAstrocylindersMultiRunLM_GaussianFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinStickAstrosticksLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelinstick and astrosticks model using one run of a Levenburg
Marquardt and assuming a Gaussian noise model.
- ZeppelinStickAstrosticksLM_Fitter() - Constructor for class fitters.ZeppelinStickAstrosticksLM_Fitter
-
Default constructor required for derived classes.
- ZeppelinStickAstrosticksLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickAstrosticksLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinStickAstrosticksLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the zeppelinstick and astrosticks model using one run of a Levenburg
Marquardt and assuming a Gaussian noise model.
- ZeppelinStickAstrosticksLM_GaussianFitter() - Constructor for class fitters.ZeppelinStickAstrosticksLM_GaussianFitter
-
Default constructor required for derived classes.
- ZeppelinStickAstrosticksLM_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickAstrosticksLM_GaussianFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinStickAstrosticksMultiRunLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelinstickastrosticks model using multiple runs of a Levenburg
Marquardt.
- ZeppelinStickAstrosticksMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickAstrosticksMultiRunLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinStickAstrosticksMultiRunLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the zeppelinstickastrosticks model using multiple runs of a Levenburg
Marquardt and assuming a Gaussian noise model.
- ZeppelinStickAstrosticksMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickAstrosticksMultiRunLM_GaussianFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinStickDotLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelinstick and dot model using one run of a Levenburg
Marquardt.
- ZeppelinStickDotLM_Fitter() - Constructor for class fitters.ZeppelinStickDotLM_Fitter
-
Default constructor required for derived classes.
- ZeppelinStickDotLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickDotLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinStickDotLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the zeppelinstick and dot model using one run of a Levenburg
Marquardt and assuming a Gaussian noise model.
- ZeppelinStickDotLM_GaussianFitter() - Constructor for class fitters.ZeppelinStickDotLM_GaussianFitter
-
Default constructor required for derived classes.
- ZeppelinStickDotLM_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickDotLM_GaussianFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinStickDotMultiRunLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelinstickdot model using multiple runs of a Levenburg
Marquardt.
- ZeppelinStickDotMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickDotMultiRunLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinStickDotMultiRunLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the zeppelinstickdot model using multiple runs of a Levenburg
Marquardt and assuming a Gaussian noise model.
- ZeppelinStickDotMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickDotMultiRunLM_GaussianFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinStickLM_DirectFitter - Class in fitters
-
Purpose:
Fits the zeppelin and stick model using one run of a Levenburg
Marquardt.
- ZeppelinStickLM_DirectFitter() - Constructor for class fitters.ZeppelinStickLM_DirectFitter
-
Default constructor required for derived classes.
- ZeppelinStickLM_DirectFitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickLM_DirectFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinStickLM_DirectFitter(DW_Scheme, String[], double[]) - Constructor for class fitters.ZeppelinStickLM_DirectFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinStickLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelin and stick model using one run of a Levenburg Marquardt.
- ZeppelinStickLM_Fitter() - Constructor for class fitters.ZeppelinStickLM_Fitter
-
Default constructor required for derived classes.
- ZeppelinStickLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickLM_Fitter
-
Constructor implements the mapping between model and optimized parameters
in the Codec object.
- ZeppelinStickLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the zeppelin and stick model using one run of a Levenburg Marquardt
and assuming a Gaussian noise model.
- ZeppelinStickLM_GaussianFitter() - Constructor for class fitters.ZeppelinStickLM_GaussianFitter
-
Default constructor required for derived classes.
- ZeppelinStickLM_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickLM_GaussianFitter
-
Constructor implements the mapping between model and optimized parameters
in the Codec object.
- ZeppelinStickMultiRunLM_DirectFitter - Class in fitters
-
Purpose:
Fits the zeppelin and stick model using multiple runs of a Levenburg
Marquardt and a specified noise model.
- ZeppelinStickMultiRunLM_DirectFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickMultiRunLM_DirectFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinStickMultiRunLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelin and stick model using multiple runs of a Levenburg
Marquardt.
- ZeppelinStickMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickMultiRunLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinStickMultiRunLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the zeppelin and stick model using multiple runs of a Levenburg
Marquardt and assuming a Gaussian noise model.
- ZeppelinStickMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickMultiRunLM_GaussianFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinStickSphereLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelinstick and sphere model using one run of a
Levenburg Marquardt.
- ZeppelinStickSphereLM_Fitter() - Constructor for class fitters.ZeppelinStickSphereLM_Fitter
-
Default constructor required for derived classes.
- ZeppelinStickSphereLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickSphereLM_Fitter
-
Constructor implements the mapping between model and optimized parameters
in the Codec object.
- ZeppelinStickSphereLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the zeppelinstick and sphere model using one run of a
Levenburg Marquardt and assuming a Gaussian noise model.
- ZeppelinStickSphereLM_GaussianFitter() - Constructor for class fitters.ZeppelinStickSphereLM_GaussianFitter
-
Default constructor required for derived classes.
- ZeppelinStickSphereLM_GaussianFitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickSphereLM_GaussianFitter
-
Constructor implements the mapping between model and optimized parameters
in the Codec object.
- ZeppelinStickSphereMultiRunLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelinsticksphere model using multiple runs of a Levenburg
Marquardt.
- ZeppelinStickSphereMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickSphereMultiRunLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinStickSphereMultiRunLM_GaussianFitter - Class in fitters
-
Purpose:
Fits the zeppelinsticksphere model using multiple runs of a Levenburg
Marquardt and assuming a Gaussian noise model.
- ZeppelinStickSphereMultiRunLM_GaussianFitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickSphereMultiRunLM_GaussianFitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinStickTortLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelin and stick model predicting zeppelin
perpendicular diffusivity from the volume fraction and
using one run of a Levenburg
Marquardt.
- ZeppelinStickTortLM_Fitter() - Constructor for class fitters.ZeppelinStickTortLM_Fitter
-
Default constructor required for derived classes.
- ZeppelinStickTortLM_Fitter(DW_Scheme) - Constructor for class fitters.ZeppelinStickTortLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinStickTortLM_Fitter(DW_Scheme, String[], double[]) - Constructor for class fitters.ZeppelinStickTortLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- ZeppelinStickTortMultiRunLM_Fitter - Class in fitters
-
Purpose:
Fits the zeppelin and stick model with tortuosity approximation
using multiple runs of a Levenburg Marquardt and a specified noise model.
- ZeppelinStickTortMultiRunLM_Fitter(DW_Scheme, int, int) - Constructor for class fitters.ZeppelinStickTortMultiRunLM_Fitter
-
Constructor implements the mapping between model and optimized
parameters in the Codec object.
- zero(int) - Method in class imaging.DW_Scheme
-
Determines whether a measurement has zero diffusion weighting.
- zMax() - Method in class tractography.LookupTable
-
- zMin() - Method in class tractography.LookupTable
-
- zStep() - Method in class tractography.LookupTable
-
- zVoxelDim() - Method in class imaging.AnalyzeHeader
-
- zVoxelDim() - Method in class imaging.ImageHeader
-
Analyze : pixeldepth
(may be negative).
- zVoxelDim() - Method in class imaging.MetaImageHeader
-
- zVoxelDim() - Method in class imaging.Nifti1Dataset
-
- zVoxelDim() - Method in class tractography.TractographyImage
-
Size (mm) of z voxel length.