Package | Description |
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apps | |
tractography |
Modifier and Type | Method and Description |
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static java.util.ArrayList<Edge> |
ConnectivityMapping.computeEdges(java.util.ArrayList<Edge> allEdges,
java.util.ArrayList<Tract> connectedTracts,
java.util.HashMap<java.lang.Integer,java.util.ArrayList<Tract>> roiConnectedTracts)
Computes the number of tracts connecting any two ROI and their length and weight
|
Modifier and Type | Method and Description |
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static java.util.ArrayList<Edge> |
ConnectivityMapping.computeEdges(java.util.ArrayList<Edge> allEdges,
java.util.ArrayList<Tract> connectedTracts,
java.util.HashMap<java.lang.Integer,java.util.ArrayList<Tract>> roiConnectedTracts)
Computes the number of tracts connecting any two ROI and their length and weight
|
static void |
ConnectivityMapping.computeStrength(java.util.ArrayList<Edge> allEdges,
java.util.HashMap<java.lang.Integer,java.lang.Integer> nodeStrength)
Creates a hashmap of the node intensities and the number of tracts
reaching a node.
|
static void |
ConnectivityMapping.writeConnectionMatrix(java.util.ArrayList<java.lang.Integer> roiIntensities,
java.util.ArrayList<Edge> connectedEdges,
java.util.HashMap<java.lang.Integer,java.lang.String> indexLabelMap)
Creates a file "ConnectionMatrix.txt" at the current location
containing a matrix of connecting tracts between the ROIs
|
Constructor and Description |
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Graph(java.util.ArrayList<java.lang.Integer> aRoiIntensities,
java.util.HashMap<java.lang.Integer,java.lang.Integer> aVerticesX,
java.util.HashMap<java.lang.Integer,java.lang.Integer> aVerticesY,
java.util.ArrayList<Edge> aComputedEdges,
java.util.HashMap<java.lang.Integer,java.lang.String> aIndexLabelMap,
java.util.HashMap<java.lang.Integer,java.lang.Integer> aNodeStrength,
int aThreshold) |