- valueAt(Point3D) - Method in class misc.ScalarImage
-
If the point is outside the image array, the function returns
zero.
- valueOf(String) - Static method in enum apps.StreamlineTractography.ImageType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum data.compartments.CompartmentType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum fitters.FitAlgorithm
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum fitters.FitModel
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum fitters.NoiseModel
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum imaging.MetaImageHeader.AnatomicalOrientation
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum imaging.MetaImageHeader.DataType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum imaging.MetaImageHeader.ObjectType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum inverters.InversionIndex
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum inverters.ModelIndex
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum models.compartments.CompartmentType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum simulation.dynamics.StepAmenderFactory.AmenderType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum simulation.dynamics.StepGeneratorFactory.StepType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum simulation.geometry.elements.CylinderFactory.CylType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum simulation.geometry.substrates.SubstrateFactory.SubstrateType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum simulation.measurement.ScanFactory.ScanType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum simulation.measurement.StatisticsModuleFactory.StatsModuleType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum tractography.DataModel
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum tractography.PICoPDF
-
Returns the enum constant of this type with the specified name.
- values() - Static method in enum apps.StreamlineTractography.ImageType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum data.compartments.CompartmentType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum fitters.FitAlgorithm
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum fitters.FitModel
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum fitters.NoiseModel
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum imaging.MetaImageHeader.AnatomicalOrientation
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum imaging.MetaImageHeader.DataType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum imaging.MetaImageHeader.ObjectType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum inverters.InversionIndex
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum inverters.ModelIndex
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum models.compartments.CompartmentType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum simulation.dynamics.StepAmenderFactory.AmenderType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum simulation.dynamics.StepGeneratorFactory.StepType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum simulation.geometry.elements.CylinderFactory.CylType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum simulation.geometry.substrates.SubstrateFactory.SubstrateType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum simulation.measurement.ScanFactory.ScanType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum simulation.measurement.StatisticsModuleFactory.StatsModuleType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum tractography.DataModel
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum tractography.PICoPDF
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- valuesAt(Point3D[]) - Method in class misc.ScalarImage
-
- valuesAt(Voxel[]) - Method in class misc.ScalarImage
-
- valuesPerPosition() - Method in class tractography.LookupTable
-
The length of the array returned by
getValues
.
- var(double[], double) - Static method in class tools.ArrayOps
-
Returns the variance of the values in the array.
- variables() - Method in class numerics.PolynomialFunction
-
- variables() - Method in class numerics.PolynomialFunction1D
-
- variables() - Method in class numerics.PolynomialFunction2D
-
- Vector3D - Class in numerics
-
Purpose:
To encapsulate 3D cartesian vector.
- Vector3D() - Constructor for class numerics.Vector3D
-
- Vector3D(double, double, double) - Constructor for class numerics.Vector3D
-
- Vector3D(double[]) - Constructor for class numerics.Vector3D
-
- Vector3D(Vector3D) - Constructor for class numerics.Vector3D
-
- Vector3D(Point3D, Point3D) - Constructor for class numerics.Vector3D
-
Construct vector (p1 - p0) from two points.
- vectorFromSPC(double, double, double) - Static method in class numerics.Vector3D
-
Get a Cartesian vector from the spherical polar coordinates.
- VectorLinearInterpolator - Class in tractography
-
Provides interpolated measurements of the principal direction
at any point within the dataset.
- VectorLinearInterpolator(TractographyImage) - Constructor for class tractography.VectorLinearInterpolator
-
Construct an interpolator.
- VERSION - Static variable in class imaging.B_VectorScheme
-
String that identifies this scheme version in the scheme file.
- VERSION - Static variable in class imaging.RectGradSteTanScheme
-
String that identifies this scheme version in the scheme file.
- VERSION - Static variable in class imaging.RectGradTRSE_Scheme
-
String that identifies this scheme version in the scheme file.
- volFrac - Static variable in class tools.CL_Initializer
-
volume fraction
- vox_offset - Variable in class imaging.AnalyzeHeader
-
- vox_offset - Variable in class imaging.Nifti1Dataset
-
- Voxel - Class in tractography
-
- Voxel(int, int, int) - Constructor for class tractography.Voxel
-
- VoxelClassify - Class in apps
-
Purpose:
Classifies each voxel as background, isotropic, anisotropic Gaussian or
non-Gaussian.
- VoxelClassify(String[]) - Constructor for class apps.VoxelClassify
-
Output manager
- voxelClassMap - Static variable in class tools.CL_Initializer
-
Name of file containing voxel classification.
- voxelContains(double[]) - Method in class simulation.geometry.substrates.MeshSubstrate
-
check is a given walker is in the voxel.
- voxelContains(double[]) - Method in class simulation.geometry.substrates.Substrate
-
checks if a walker is in the current voxel.
- voxelDims - Static variable in class tools.CL_Initializer
-
Voxel size in millimeters
- VoxelList - Class in tractography
-
Holds a streamline as a list of voxels.
- VoxelList(Voxel[], int, double, double, double, Vector3D, Vector3D) - Constructor for class tractography.VoxelList
-
- VoxelMean - Class in apps
-
module that takes several voxels of data and generates the mean
in each direction.
- VoxelMean() - Constructor for class apps.VoxelMean
-
- VoxelOrderDataSource - Class in data
-
Purpose:
Source of voxel order data from a data file or standard input stream.
- VoxelOrderDataSource(String, int, String) - Constructor for class data.VoxelOrderDataSource
-
Constructor requires the filename, the number of values in each voxel and
the data type.
- VoxelOrderDataSource(String, int, String, boolean) - Constructor for class data.VoxelOrderDataSource
-
- VoxelOrderDataSource(String, int, String, boolean, int) - Constructor for class data.VoxelOrderDataSource
-
- VoxelOrderDataSource(EndianNeutralDataInputStream, int, String) - Constructor for class data.VoxelOrderDataSource
-
Initialize a VoxelOrderDataSource from an input stream.
- VoxelOrderDW_DataSource - Class in data
-
Purpose:
Source of voxel order diffusion-weighted MRI data from a data file or
standard input.
- VoxelOrderDW_DataSource(String, String, DW_Scheme) - Constructor for class data.VoxelOrderDW_DataSource
-
Constructor requires the filename, the number of values in each voxel and
the data type.
- VoxelOrderScaledDataSource - Class in data
-
Like a regular VoxelOrderDataSource, except that it scales the input data.
- VoxelOrderScaledDataSource(String, int, String, boolean, int, double, double) - Constructor for class data.VoxelOrderScaledDataSource
-
Constructor requires the filename, the number of values in each voxel and
the data type.
- VoxelToScanner - Class in apps
-
Purpose:
Converts voxel order data to scanner order.
- VoxelToScanner(String[]) - Constructor for class apps.VoxelToScanner
-
- VoxelwiseStatisticalImage - Interface in misc
-
Interface for images that compute statistics on the values in each voxel.
- voxToObjects - Variable in class simulation.geometry.substrates.Substrate
-
map of subvoxels to arrays of substrate objects for
spatial optimisation
- VTK_Streamlines - Class in apps
-
Converts streamlines from raw format to VTK polylines (in binary form).
- VTK_Streamlines() - Constructor for class apps.VTK_Streamlines
-