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O

objectType - Variable in class imaging.MetaImageHeader
ObjectType, which for us is always Image.
offset - Variable in class imaging.MetaImageHeader
Offset
oneDirectionStats(double[][], int) - Static method in class apps.InversionStats
Computes the principal eigenvector (ex, ey, ez) and eigenvalues (l1, l2, l3) of the mean dyadic of a list of vectors.
OneTensorLUTGenerator - Class in tractography
Fits some distribution to samples of tensors with added noise.
OneTensorLUTGenerator(DW_Scheme, double, double, Random) - Constructor for class tractography.OneTensorLUTGenerator
 
ONETENVALSPERVOXEL - Static variable in class tools.CL_Initializer
The number of values per voxel in single tensor data.
optimizers - package optimizers
 
optToModel(double[]) - Method in class fitters.Codec
Maps the optimized parameters to the model parameters.
orderComponentsByDirection(double[][], int, int, int) - Method in class apps.InversionStats
Reorders the array of inversion properties when it contains multiple directions to maximize the similarity of the directions in each component.
OrderedAcqMinimizer - Class in misc
Superclass for classes that order electrostatic point sets.
OrderedAcqMinimizer(int, double, int, String, Random) - Constructor for class misc.OrderedAcqMinimizer
Initializes points in a random order.
OrderedAcqMinimizer(double[][], double, int, String, Random) - Constructor for class misc.OrderedAcqMinimizer
 
OrderedAcqSingleSubsetMinimizer - Class in misc
 
OrderedAcqSingleSubsetMinimizer(int, int, double, int, String, Random) - Constructor for class misc.OrderedAcqSingleSubsetMinimizer
 
OrderedAcqSingleSubsetMinimizer(double[][], int, double, int, String, Random) - Constructor for class misc.OrderedAcqSingleSubsetMinimizer
 
OrderedAcqSubsetMinimizer - Class in misc
Divides a set of gradient directions into subsets, and searches for a configuration where the sum of the electrostatic energy of each subset is minimal.
OrderedAcqSubsetMinimizer(int, int[], double, int, String, Random) - Constructor for class misc.OrderedAcqSubsetMinimizer
 
OrderedAcqSubsetMinimizer(double[][], int[], double, int, String, Random) - Constructor for class misc.OrderedAcqSubsetMinimizer
 
OrderedAcqWeightedMinimizer - Class in misc
 
OrderedAcqWeightedMinimizer(int, double, int, String, Random) - Constructor for class misc.OrderedAcqWeightedMinimizer
 
OrderedAcqWeightedMinimizer(double[][], double, int, String, Random) - Constructor for class misc.OrderedAcqWeightedMinimizer
 
OrderElectrostaticPoints - Class in apps
Orders electrostatic points according to the method in Cook et al (ISMRM 2006, p.
OrderElectrostaticPoints(String[]) - Constructor for class apps.OrderElectrostaticPoints
 
orderPeaksByMeanStrength(double[][], int, int, int) - Method in class apps.MultiFibreReconStats
Reorders the array of inversion properties when it contains multiple directions by the mean strength of the peak directions across all trials.
OrientationBiasMap - Class in apps
Iterates over the hemisphere, fitting synthetic data at each point and evaluating its error statistics.
OrientationBiasMap(String[]) - Constructor for class apps.OrientationBiasMap
 
out - Static variable in class apps.Shredder
 
outlierMapFile - Static variable in class tools.CL_Initializer
Name of the outlier map for RESTORE.
output(byte[]) - Static method in class apps.Shredder
Outputs the chunk to the standard output.
output(double[]) - Method in class data.OutputManager
Outputs the data for one voxel to the selected output stream.
outputBitMap(DataOutputStream, boolean) - Static method in class apps.SphFuncBitMap
Outputs the bitmap image to a file.
outputDataType - Static variable in class data.OutputManager
The type of the output data
outputFile - Static variable in class data.OutputManager
Name of the output file.
OutputManager - Class in data
Purpose: Handles output of data from various applications.
OutputManager() - Constructor for class data.OutputManager
Sets up an output stream for an output file if the output file has been specified, otherwise stays with the default output stream.
OutsideLUTRangeException - Exception in tractography
 
OutsideLUTRangeException(String) - Constructor for exception tractography.OutsideLUTRangeException
 
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