Macromolecular coordinate superposition library

Registered 2010-08-10 by Morten Kjeldgaard

A C++ toolkit for superposition of macromolecules

SSM is a macromolecular coordinate superposition library, written by Eugene Krissinel of the EBI.

 The library implements the SSM algorithm of protein structure comparison in three dimensions, which includes an original procedure of matching graphs built on the protein's secondary-structure elements, followed by an iterative three-dimensional alignment of protein backbone Calpha atoms.

The algorithm implemented by the software is described in: E. Krissinel & K. Henrick (2004) "Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions". Acta Crystallogr D Biol Crystallogr. 60, 2256-68.

Project information

Maintainer:
Morten Kjeldgaard
Driver:
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Development focus:

trunk series 

lp:ssm 
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Programming Languages:
C++
Licences:
GNU LGPL v2.1
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Latest version is 1.1
released on 2011-01-17

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