diff -Nru canu-2.0+dfsg/debian/changelog canu-2.0+dfsg/debian/changelog --- canu-2.0+dfsg/debian/changelog 2020-03-27 23:42:06.000000000 +0000 +++ canu-2.0+dfsg/debian/changelog 2021-10-28 20:27:43.000000000 +0000 @@ -1,3 +1,11 @@ +canu (2.0+dfsg-2) unstable; urgency=medium + + * Team Upload. + * Add patch to fix FTBFS with new glibc (Closes: #997215) + * Run cme + + -- Nilesh Patra Fri, 29 Oct 2021 01:57:43 +0530 + canu (2.0+dfsg-1) unstable; urgency=medium * Team upload. diff -Nru canu-2.0+dfsg/debian/control canu-2.0+dfsg/debian/control --- canu-2.0+dfsg/debian/control 2020-03-27 23:42:06.000000000 +0000 +++ canu-2.0+dfsg/debian/control 2021-10-28 20:27:43.000000000 +0000 @@ -2,13 +2,13 @@ Maintainer: Debian Med Packaging Team Section: science Priority: optional -Build-Depends: debhelper-compat (= 12), +Build-Depends: debhelper-compat (= 13), libboost-dev, libmeryl-dev, # For File::Path libfilesys-df-perl, - mhap (>= 2.1.3) -Standards-Version: 4.5.0 + mhap +Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/canu Vcs-Git: https://salsa.debian.org/med-team/canu.git Homepage: http://canu.readthedocs.org/en/latest/ @@ -19,7 +19,7 @@ ${misc:Depends}, ${perl:Depends}, libfilesys-df-perl, - mhap (>= 2.1.3), + mhap, gnuplot Suggests: pbgenomicconsensus, nanopolish diff -Nru canu-2.0+dfsg/debian/install canu-2.0+dfsg/debian/install --- canu-2.0+dfsg/debian/install 2019-11-10 10:12:28.000000000 +0000 +++ canu-2.0+dfsg/debian/install 2021-10-28 20:27:43.000000000 +0000 @@ -1,3 +1,3 @@ *-*/bin usr/lib/canu/ *-*/lib usr/lib/canu/ -debian/bin/canu /usr/bin/ +debian/bin/canu usr/bin/ diff -Nru canu-2.0+dfsg/debian/patches/canu_version.patch canu-2.0+dfsg/debian/patches/canu_version.patch --- canu-2.0+dfsg/debian/patches/canu_version.patch 2020-03-27 23:42:06.000000000 +0000 +++ canu-2.0+dfsg/debian/patches/canu_version.patch 2021-10-28 20:27:43.000000000 +0000 @@ -1,3 +1,4 @@ +Description: Canu_version Index: canu/src/canu_version_update.pl =================================================================== --- canu.orig/src/canu_version_update.pl diff -Nru canu-2.0+dfsg/debian/patches/remove-deprecated-sysctl.patch canu-2.0+dfsg/debian/patches/remove-deprecated-sysctl.patch --- canu-2.0+dfsg/debian/patches/remove-deprecated-sysctl.patch 1970-01-01 00:00:00.000000000 +0000 +++ canu-2.0+dfsg/debian/patches/remove-deprecated-sysctl.patch 2021-10-28 20:27:43.000000000 +0000 @@ -0,0 +1,18 @@ +Description: sysctl.h has been removed with latest glibc, do not include it +Bug-Debian: https://bugs.debian.org/997215 +Author: Nilesh Patra +Last-Update: 2021-10-29 +--- a/src/utility/system.C ++++ b/src/utility/system.C +@@ -42,11 +42,6 @@ + #include "jemalloc/jemalloc.h" + #endif + +-#if !defined(__CYGWIN__) && !defined(_WIN32) +-#include +-#endif +- +- + + double + getTime(void) { diff -Nru canu-2.0+dfsg/debian/patches/series canu-2.0+dfsg/debian/patches/series --- canu-2.0+dfsg/debian/patches/series 2020-03-27 23:42:06.000000000 +0000 +++ canu-2.0+dfsg/debian/patches/series 2021-10-28 20:27:43.000000000 +0000 @@ -1,3 +1,4 @@ use-debian-mhap-at-runtime.patch external-mhap.patch canu_version.patch +remove-deprecated-sysctl.patch