diff -Nru gff2ps-0.98d/debian/changelog gff2ps-0.98d/debian/changelog --- gff2ps-0.98d/debian/changelog 2012-05-14 11:27:02.000000000 +0000 +++ gff2ps-0.98d/debian/changelog 2012-05-03 11:59:21.000000000 +0000 @@ -1,3 +1,20 @@ +gff2ps (0.98d-4) unstable; urgency=low + + [ Nelson A. de Oliveira ] + * Remove linda override; + + [ Andreas Tille ] + * debian/upstream: add citation + * debian/control: + - Standards-Version: 3.9.3 (no changes needed) + - Fixed Vcs-Svn + * debian/rules: switch from cdbs to dh + * debian/source/format: 3.0 (quilt) + * debian/copyright: DEP5 + * debian/gff2ps.1: Fixed minor lintian issue + + -- Andreas Tille Thu, 03 May 2012 11:35:44 +0200 + gff2ps (0.98d-3) unstable; urgency=low * Updated Standards-Version; diff -Nru gff2ps-0.98d/debian/compat gff2ps-0.98d/debian/compat --- gff2ps-0.98d/debian/compat 2012-05-14 11:27:02.000000000 +0000 +++ gff2ps-0.98d/debian/compat 2012-05-03 09:28:10.000000000 +0000 @@ -1 +1 @@ -5 +8 diff -Nru gff2ps-0.98d/debian/control gff2ps-0.98d/debian/control --- gff2ps-0.98d/debian/control 2012-05-14 11:27:02.000000000 +0000 +++ gff2ps-0.98d/debian/control 2012-05-03 09:28:05.000000000 +0000 @@ -1,13 +1,14 @@ Source: gff2ps Section: science Priority: optional -Maintainer: Debian-Med Packaging Team +Maintainer: Debian Med Packaging Team DM-Upload-Allowed: yes -Uploaders: Nelson A. de Oliveira -Build-Depends: cdbs, debhelper (>= 5) -Standards-Version: 3.7.3 +Uploaders: Nelson A. de Oliveira , + Andreas Tille +Build-Depends: debhelper (>= 8) +Standards-Version: 3.9.3 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/gff2ps/trunk/ -Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/gff2ps/trunk/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/gff2ps/trunk/ Homepage: http://genome.imim.es/software/gfftools/GFF2PS.html Package: gff2ps diff -Nru gff2ps-0.98d/debian/copyright gff2ps-0.98d/debian/copyright --- gff2ps-0.98d/debian/copyright 2012-05-14 11:27:02.000000000 +0000 +++ gff2ps-0.98d/debian/copyright 2012-05-03 09:38:15.000000000 +0000 @@ -1,28 +1,34 @@ -This package was debianized by Nelson A. de Oliveira on -Tue, 22 Mar 2005 12:22:50 -0300. - -It was downloaded from http://genome.imim.es/software/gfftools/GFF2PS.html - -gff2ps - - Converting GFF files to PostScript. - - Copyright (C) 1999-2003 - Josep Francesc ABRIL FERRANDO - Roderic GUIGO SERRA +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: GFF2Ps +Upstream-Contact: Josep Francesc ABRIL FERRANDO +Source: http://genome.imim.es/software/gfftools/GFF2PS.html + +Files: * +Copyright: 1999-2003 Josep Francesc ABRIL FERRANDO + Roderic GUIGO SERRA +License: GPL-2+ + +Files: debian/* +Copyright: 2005-2008 Nelson A. de Oliveira + 2012 Andreas Tille +License: GPL-2+ +License: GPL-2+ This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. - + . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. - + . You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA. + . + On Debian systems, the complete text of the GNU General + Public License can be found in `/usr/share/common-licenses/GPL'. -On Debian systems, the GPL license can be found at /usr/share/common-licenses/ diff -Nru gff2ps-0.98d/debian/dirs gff2ps-0.98d/debian/dirs --- gff2ps-0.98d/debian/dirs 2012-05-14 11:27:02.000000000 +0000 +++ gff2ps-0.98d/debian/dirs 2008-11-17 06:36:40.000000000 +0000 @@ -1,3 +1,2 @@ usr/bin usr/share/gff2ps -usr/share/linda/overrides diff -Nru gff2ps-0.98d/debian/gff2ps.1 gff2ps-0.98d/debian/gff2ps.1 --- gff2ps-0.98d/debian/gff2ps.1 2012-05-14 11:27:02.000000000 +0000 +++ gff2ps-0.98d/debian/gff2ps.1 2012-05-03 11:58:52.000000000 +0000 @@ -81,13 +81,13 @@ Number of major tickmarks per line (default 10). .TP .B \-K <#> -Major tickmarks scale in nucleotides, default is nucleotide length for lines divided by major tickmarks number (see option -T). +Major tickmarks scale in nucleotides, default is nucleotide length for lines divided by major tickmarks number (see option \-T). .TP .B \-m <#> Number of minor tickmarks between major tickmarks (default 10). .TP .B \-k <#> -Minor tickmarks scale in nucleotides default is major tickmarks size divided by minor tickmarks number (see option -t). +Minor tickmarks scale in nucleotides default is major tickmarks size divided by minor tickmarks number (see option \-t). .TP .B \-w, \-f Switch off displaying forward-strand(Watson) elements. diff -Nru gff2ps-0.98d/debian/linda.override gff2ps-0.98d/debian/linda.override --- gff2ps-0.98d/debian/linda.override 2012-05-14 11:27:02.000000000 +0000 +++ gff2ps-0.98d/debian/linda.override 1970-01-01 00:00:00.000000000 +0000 @@ -1,2 +0,0 @@ -Tag: exec-not-elf-or-script -Data: /usr/share/gff2ps/gff2ps.real diff -Nru gff2ps-0.98d/debian/patches/01-gff2ps_v0.98d.diff gff2ps-0.98d/debian/patches/01-gff2ps_v0.98d.diff --- gff2ps-0.98d/debian/patches/01-gff2ps_v0.98d.diff 2012-05-14 11:27:02.000000000 +0000 +++ gff2ps-0.98d/debian/patches/01-gff2ps_v0.98d.diff 1970-01-01 00:00:00.000000000 +0000 @@ -1,11 +0,0 @@ ---- gff2ps_v0.98d 2005-03-22 12:23:09.000000000 -0300 -+++ gff2ps_v0.98d-new 2005-03-22 12:23:49.000000000 -0300 -@@ -39,7 +39,7 @@ - # Only for testing (only works in bash) - # set -o xtrace - --GAWK="/usr/local/bin/gawk"; -+GAWK="/usr/bin/gawk"; - - ############################################################## - #################### PROGRAM DEFINITIONS ##################### diff -Nru gff2ps-0.98d/debian/rules gff2ps-0.98d/debian/rules --- gff2ps-0.98d/debian/rules 2012-05-14 11:27:02.000000000 +0000 +++ gff2ps-0.98d/debian/rules 2012-05-03 09:17:56.000000000 +0000 @@ -1,8 +1,8 @@ #!/usr/bin/make -f -include /usr/share/cdbs/1/rules/simple-patchsys.mk -include /usr/share/cdbs/1/rules/debhelper.mk +%: + dh $@ -install/gff2ps:: +override_dh_install: + dh_install install -m 755 gff2ps_v0.98d debian/gff2ps/usr/share/gff2ps/gff2ps.real - install -m 644 debian/linda.override debian/gff2ps/usr/share/linda/overrides/gff2ps diff -Nru gff2ps-0.98d/debian/source/format gff2ps-0.98d/debian/source/format --- gff2ps-0.98d/debian/source/format 1970-01-01 00:00:00.000000000 +0000 +++ gff2ps-0.98d/debian/source/format 2012-05-14 11:27:02.000000000 +0000 @@ -0,0 +1 @@ +3.0 (quilt) diff -Nru gff2ps-0.98d/debian/upstream gff2ps-0.98d/debian/upstream --- gff2ps-0.98d/debian/upstream 1970-01-01 00:00:00.000000000 +0000 +++ gff2ps-0.98d/debian/upstream 2012-05-01 21:11:27.000000000 +0000 @@ -0,0 +1,12 @@ +Reference: + Author: J. F. Abril and R. Guigó + Title: "gff2ps: visualizing genomic annotations." + Journal: Bioinformatics + Year: 2000 + Volume: 16 + Number: 8 + Pages: 743-744 + DOI: 10.1093/bioinformatics/16.8.743 + PMID: 11099262 + URL: http://bioinformatics.oxfordjournals.org/content/16/8/743.abstract + eprint: http://bioinformatics.oxfordjournals.org/content/16/8/743.full.pdf+html diff -Nru gff2ps-0.98d/debian/wrapper/gff2ps gff2ps-0.98d/debian/wrapper/gff2ps --- gff2ps-0.98d/debian/wrapper/gff2ps 2012-05-14 11:27:02.000000000 +0000 +++ gff2ps-0.98d/debian/wrapper/gff2ps 2008-11-17 06:36:40.000000000 +0000 @@ -1,3 +1,3 @@ -#!/bin/bash +#!/bin/sh LC_ALL=C /usr/share/gff2ps/gff2ps.real "$@" diff -Nru gff2ps-0.98d/gff2ps_v0.98d gff2ps-0.98d/gff2ps_v0.98d --- gff2ps-0.98d/gff2ps_v0.98d 2012-05-14 11:27:02.000000000 +0000 +++ gff2ps-0.98d/gff2ps_v0.98d 2005-03-22 15:53:28.000000000 +0000 @@ -39,7 +39,7 @@ # Only for testing (only works in bash) # set -o xtrace -GAWK="/usr/local/bin/gawk"; +GAWK="/usr/bin/gawk"; ############################################################## #################### PROGRAM DEFINITIONS #####################