diff -Nru gubbins-2.4.1/debian/changelog gubbins-2.4.1/debian/changelog --- gubbins-2.4.1/debian/changelog 2020-04-02 15:03:51.000000000 +0000 +++ gubbins-2.4.1/debian/changelog 2020-11-02 12:22:13.000000000 +0000 @@ -1,3 +1,17 @@ +gubbins (2.4.1-3) unstable; urgency=medium + + [ Andreas Tille ] + * Remove non-working e-mail addresses + * Remove Aidan Delaney from Uploaders since his e-mail is bouncing + + [ Étienne Mollier ] + * Added src/ to PATH for build time tests. (Closes: #971111) + * Fixed spelling error in gubbins binaries. + * Added myself to Uploaders. + * debhelper-compat 13 (routine-update) + + -- Étienne Mollier Mon, 02 Nov 2020 13:22:13 +0100 + gubbins (2.4.1-2) unstable; urgency=medium * Versioned Build-Depends: raxml (>= 8.2.12+dfsg-5) diff -Nru gubbins-2.4.1/debian/control gubbins-2.4.1/debian/control --- gubbins-2.4.1/debian/control 2020-04-02 15:03:51.000000000 +0000 +++ gubbins-2.4.1/debian/control 2020-11-02 12:22:12.000000000 +0000 @@ -1,10 +1,10 @@ Source: gubbins Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , - Aidan Delaney + Étienne Mollier Section: science Priority: optional -Build-Depends: debhelper-compat (= 12), +Build-Depends: debhelper-compat (= 13), dh-python, fasttree, iqtree, diff -Nru gubbins-2.4.1/debian/copyright gubbins-2.4.1/debian/copyright --- gubbins-2.4.1/debian/copyright 2020-04-02 15:03:51.000000000 +0000 +++ gubbins-2.4.1/debian/copyright 2020-11-02 12:22:12.000000000 +0000 @@ -4,9 +4,9 @@ Files: * Copyright: 2012-2014 Nicholas Croucher - 2012-2014 Aidan Delaney + 2012-2014 Aidan Delaney 2012-2014 Simon Harris - 2012-2014 Andrew J. Page + 2012-2014 Andrew J. Page License: GPL-2+ Files: debian/* diff -Nru gubbins-2.4.1/debian/patches/series gubbins-2.4.1/debian/patches/series --- gubbins-2.4.1/debian/patches/series 2020-04-02 15:03:51.000000000 +0000 +++ gubbins-2.4.1/debian/patches/series 2020-11-02 12:08:17.000000000 +0000 @@ -1,2 +1,3 @@ do_not_handle_python_by_upstream_build_system.patch gubbins_exe_in_usr_lib.patch +spelling-error-in-binary.patch diff -Nru gubbins-2.4.1/debian/patches/spelling-error-in-binary.patch gubbins-2.4.1/debian/patches/spelling-error-in-binary.patch --- gubbins-2.4.1/debian/patches/spelling-error-in-binary.patch 1970-01-01 00:00:00.000000000 +0000 +++ gubbins-2.4.1/debian/patches/spelling-error-in-binary.patch 2020-11-02 12:10:55.000000000 +0000 @@ -0,0 +1,28 @@ +Description: fix spelling error in binaries +Author: Étienne Mollier +Forwarded: no +Last-Update: 2020-11-02 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- gubbins.orig/src/alignment_file.c ++++ gubbins/src/alignment_file.c +@@ -101,7 +101,7 @@ + int length_of_genome; + + if( access( filename, F_OK ) == -1 ) { +- printf("Cannot calculate genome_length because file '%s' doesnt exist\n",filename); ++ printf("Cannot calculate genome_length because file '%s' does not exist\n",filename); + exit(0); + } + +--- gubbins.orig/src/main.c ++++ gubbins/src/main.c +@@ -59,7 +59,7 @@ + if( access( filename, F_OK ) != -1 ) { + return 1; + } else { +- printf("Error: File '%s' doesnt exist\n",filename); ++ printf("Error: File '%s' does not exist\n",filename); + print_usage(stderr, EXIT_FAILURE); + return 0; + } diff -Nru gubbins-2.4.1/debian/rules gubbins-2.4.1/debian/rules --- gubbins-2.4.1/debian/rules 2020-04-02 15:03:51.000000000 +0000 +++ gubbins-2.4.1/debian/rules 2020-11-02 12:22:10.000000000 +0000 @@ -23,7 +23,7 @@ ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) dh_auto_test cd python && \ - python3 setup.py test + PATH="$$PATH:../src" python3 setup.py test endif override_dh_install: