diff -Nru htslib-1.7/debian/changelog htslib-1.7/debian/changelog --- htslib-1.7/debian/changelog 2018-02-12 17:59:19.000000000 +0000 +++ htslib-1.7/debian/changelog 2018-02-14 12:13:18.000000000 +0000 @@ -1,3 +1,12 @@ +htslib (1.7-2) unstable; urgency=medium + + * Move all needed files into htslib-test package + Closes: #890303 + * Document how to test the package + * Update symbols file + + -- Andreas Tille Wed, 14 Feb 2018 13:13:18 +0100 + htslib (1.7-1) unstable; urgency=medium * Team upload. diff -Nru htslib-1.7/debian/htslib-test.install htslib-1.7/debian/htslib-test.install --- htslib-1.7/debian/htslib-test.install 2018-02-12 17:59:19.000000000 +0000 +++ htslib-1.7/debian/htslib-test.install 2018-02-14 12:13:18.000000000 +0000 @@ -1,7 +1,10 @@ -*.c /usr/share/htslib-test -*.h /usr/share/htslib-test -*.mk /usr/share/htslib-test -Makefile /usr/share/htslib-test -cram/*.c /usr/share/htslib-test/cram -cram/*.h /usr/share/htslib-test/cram -test/* /usr/share/htslib-test/test +*.c usr/share/htslib-test +*.h usr/share/htslib-test +*.mk usr/share/htslib-test +Makefile usr/share/htslib-test +cram/*.c usr/share/htslib-test/cram +cram/*.h usr/share/htslib-test/cram +test/* usr/share/htslib-test/test +os usr/share/htslib-test +version.sh usr/share/htslib-test +debian/tests/run-unit-test usr/share/doc/libhts-dev diff -Nru htslib-1.7/debian/libhts2.symbols htslib-1.7/debian/libhts2.symbols --- htslib-1.7/debian/libhts2.symbols 2018-02-12 17:57:36.000000000 +0000 +++ htslib-1.7/debian/libhts2.symbols 2018-02-14 12:13:18.000000000 +0000 @@ -14,6 +14,7 @@ bam_aux_update_str@Base 1.4.1 bam_cigar2qlen@Base 1.0 bam_cigar2rlen@Base 1.0 + bam_cigar2rqlens@Base 1.7 bam_construct_seq@Base 1.0 bam_copy1@Base 1.0 bam_destroy1@Base 1.0 @@ -142,10 +143,12 @@ bcf_sr_set_samples@Base 1.0 bcf_sr_set_targets@Base 1.0 bcf_sr_set_threads@Base 1.4.1 + bcf_sr_sort_add_active@Base 1.7 bcf_sr_sort_destroy@Base 1.4.1 bcf_sr_sort_init@Base 1.4.1 bcf_sr_sort_next@Base 1.4.1 bcf_sr_sort_remove_reader@Base 1.4.1 + bcf_sr_sort_set_active@Base 1.7 bcf_sr_strerror@Base 1.2.1 bcf_subset@Base 1.0 bcf_subset_format@Base 1.0 @@ -326,6 +329,7 @@ cram_huffman_encode_store@Base 1.0 cram_index_build@Base 1.0 cram_index_free@Base 1.0 + cram_index_last@Base 1.7 cram_index_load@Base 1.0 cram_index_query@Base 1.0 cram_load_reference@Base 1.0 @@ -403,9 +407,12 @@ hfile_destroy@Base 1.0 hfile_init@Base 1.0 hfile_init_fixed@Base 1.4.1 + hfile_mem_get_buffer@Base 1.7 + hfile_mem_steal_buffer@Base 1.7 hfile_oflags@Base 1.0 hfile_plugin_init_gcs@Base 1.4.1 hfile_plugin_init_libcurl@Base 1.3.1 + hfile_plugin_init_mem@Base 1.7 hfile_plugin_init_net@Base 1.3 hfile_plugin_init_s3@Base 1.4.1 hfile_set_blksize@Base 1.5 @@ -417,6 +424,7 @@ hopen@Base 1.0 hopen_htsget_redirect@Base 1.6 hopen_net@Base 1.0 + hopenv_mem@Base 1.7 hpeek@Base 1.0 hputc2@Base 1.0 hputs2@Base 1.0 @@ -454,13 +462,23 @@ hts_idx_seqnames@Base 1.0 hts_idx_set_meta@Base 1.0 hts_itr_destroy@Base 1.0 + hts_itr_multi_bam@Base 1.7 + hts_itr_multi_cram@Base 1.7 + hts_itr_multi_destroy@Base 1.7 + hts_itr_multi_next@Base 1.7 hts_itr_next@Base 1.0 + hts_itr_off@Base 1.7 hts_itr_query@Base 1.0 hts_itr_querys@Base 1.0 + hts_itr_regions@Base 1.7 + hts_json_alloc_token@Base 1.7 hts_json_fnext@Base 1.4.1 + hts_json_free_token@Base 1.7 hts_json_fskip_value@Base 1.4.1 hts_json_snext@Base 1.4.1 hts_json_sskip_value@Base 1.4.1 + hts_json_token_str@Base 1.7 + hts_json_token_type@Base 1.7 hts_log@Base 1.5 hts_lrand48@Base 1.6 hts_md5_destroy@Base 1.3 @@ -481,6 +499,7 @@ hts_readlines@Base 1.0 hts_readlist@Base 1.0 hts_realloc_or_die@Base 1.4.1 + hts_reglist_free@Base 1.7 hts_set_cache_size@Base 1.4.1 hts_set_fai_filename@Base 1.0 hts_set_log_level@Base 1.5 @@ -555,20 +574,28 @@ knet_seek@Base 1.0 kputd@Base 1.4.1 ks_combsort__off@Base 1.0 + ks_combsort__off_max@Base 1.7 ks_combsort_uint16_t@Base 1.4.1 ks_heapadjust__off@Base 1.0 + ks_heapadjust__off_max@Base 1.7 ks_heapadjust_uint16_t@Base 1.4.1 ks_heapmake__off@Base 1.0 + ks_heapmake__off_max@Base 1.7 ks_heapmake_uint16_t@Base 1.4.1 ks_heapsort__off@Base 1.0 + ks_heapsort__off_max@Base 1.7 ks_heapsort_uint16_t@Base 1.4.1 ks_introsort__off@Base 1.0 + ks_introsort__off_max@Base 1.7 ks_introsort_uint16_t@Base 1.4.1 ks_ksmall__off@Base 1.0 + ks_ksmall__off_max@Base 1.7 ks_ksmall_uint16_t@Base 1.4.1 ks_mergesort__off@Base 1.0 + ks_mergesort__off_max@Base 1.7 ks_mergesort_uint16_t@Base 1.4.1 ks_shuffle__off@Base 1.0 + ks_shuffle__off_max@Base 1.7 ks_shuffle_uint16_t@Base 1.4.1 ksplit_core@Base 1.0 ksprintf@Base 1.0 @@ -639,6 +666,7 @@ sam_hdr_add@Base 1.0 sam_hdr_add_PG@Base 1.0 sam_hdr_add_lines@Base 1.0 + sam_hdr_change_HD@Base 1.7 sam_hdr_decr_ref@Base 1.0 sam_hdr_dump@Base 1.0 sam_hdr_dup@Base 1.0 @@ -668,6 +696,7 @@ sam_index_load@Base 1.0 sam_itr_queryi@Base 1.0 sam_itr_querys@Base 1.0 + sam_itr_regions@Base 1.7 sam_open_mode@Base 1.0 sam_open_mode_opts@Base 1.3 sam_parse1@Base 1.0 diff -Nru htslib-1.7/debian/libhts-dev.docs htslib-1.7/debian/libhts-dev.docs --- htslib-1.7/debian/libhts-dev.docs 1970-01-01 00:00:00.000000000 +0000 +++ htslib-1.7/debian/libhts-dev.docs 2018-02-14 12:13:18.000000000 +0000 @@ -0,0 +1 @@ +debian/README.test diff -Nru htslib-1.7/debian/README.test htslib-1.7/debian/README.test --- htslib-1.7/debian/README.test 1970-01-01 00:00:00.000000000 +0000 +++ htslib-1.7/debian/README.test 2018-02-14 12:13:18.000000000 +0000 @@ -0,0 +1,10 @@ +Notes on how this package can be tested. +──────────────────────────────────────── + +To run the unit tests provided by the upstream authors of this package +you can install the package htslib-test and run + + sh /usr/share/doc/libhts-dev/run-unit-test + + -- Andreas Tille Wed, 14 Feb 2018 09:43:36 +0100 +