diff -Nru libminc-2.4.03/debian/changelog libminc-2.4.03/debian/changelog --- libminc-2.4.03/debian/changelog 2020-11-13 10:02:58.000000000 +0000 +++ libminc-2.4.03/debian/changelog 2020-11-18 08:07:03.000000000 +0000 @@ -1,43 +1,23 @@ -libminc (2.4.03-2build6) hirsute; urgency=medium +libminc (2.4.03-3) unstable; urgency=medium - * Rebuild against new nifticlib 2.0.0+git186-g84740c2-1 changed - library name. + * Standards-Version: 4.5.1 (routine-update) + * debhelper-compat 13 (routine-update) + * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine- + update) + * Remove trailing whitespace in debian/changelog (routine-update) + * Remove trailing whitespace in debian/control (routine-update) + * Remove trailing whitespace in debian/copyright (routine-update) + * Remove trailing whitespace in debian/rules (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * No tab in license text (routine-update) + * watch file standard 4 (routine-update) - -- Gianfranco Costamagna Fri, 13 Nov 2020 11:02:58 +0100 - -libminc (2.4.03-2build5) groovy; urgency=medium - - * No-change rebuild against libhdf5-103-1 - - -- Graham Inggs Wed, 13 May 2020 17:48:53 +0000 - -libminc (2.4.03-2build4) groovy; urgency=medium - - * No-change rebuild against libnetcdf18 - - -- Steve Langasek Wed, 06 May 2020 17:13:21 +0000 - -libminc (2.4.03-2build3) focal; urgency=medium - - * No-change rebuild for libgcc-s1 package name change. - - -- Matthias Klose Mon, 23 Mar 2020 07:18:16 +0100 - -libminc (2.4.03-2build2) focal; urgency=medium - - * No-change rebuild for netcdf soname change. - - -- Matthias Klose Thu, 30 Jan 2020 18:01:50 +0100 - -libminc (2.4.03-2build1) disco; urgency=medium - - * Rebuild against new libhdf5-103. - - -- Gianfranco Costamagna Wed, 12 Dec 2018 12:06:37 +0100 + -- Andreas Tille Wed, 18 Nov 2020 09:07:03 +0100 libminc (2.4.03-2) unstable; urgency=medium - * Team upload + * Team upload * d/: Install cmake file in the correct location Closes: #907553 (locutusofborg) @@ -45,13 +25,13 @@ libminc (2.4.03-1) unstable; urgency=medium - * re-upload to sid + * re-upload to sid -- Gert Wollny Sun, 26 Aug 2018 19:10:28 +0200 libminc (2.4.03-1~exp3) experimental; urgency=medium - * Team upload + * Team upload * d/p/disable: avoid FTBFS on powerpc -- Gert Wollny Thu, 16 Aug 2018 17:46:26 +0200 @@ -73,7 +53,7 @@ * d/p/remove-rpath: Don't set rpath when installing * Correct *.cmake install location * d/rules: add -ffloat-store in i386 build to pass tests - * d/copyright: Add some contributor names that were missing + * d/copyright: Add some contributor names that were missing -- Gert Wollny Sat, 19 May 2018 22:12:40 +0200 @@ -167,7 +147,7 @@ stricter parsing of perl 5.18. Closes: #719502. * rules: disable parallel build; causes tests to fail inexplicably. - + -- Steve M. Robbins Fri, 13 Sep 2013 23:22:53 -0500 minc (2.2.00-1) unstable; urgency=low @@ -181,7 +161,7 @@ * rules: Use "--with autoreconf" since new patches affect Makefile.am. - * rules: + * rules: * control: SOVERSION bump to 3; new package name libminc2-3. -- Steve M. Robbins Sat, 13 Oct 2012 23:09:25 -0500 @@ -189,16 +169,16 @@ minc (2.1.10-1) unstable; urgency=low * New upstream. - + * patches/03_mincview.diff: Remove. Script mincview rewritten to use Imagemagick - + * patches/decompress-whole-file.diff: * patches/read_file_names-refactor.patch: Remove. Applied upstream. * rules: Remove use of dh_autoreconf. * patches/hdfv2-fixes.patch: New. Ensure using HDF5 v2 API. - + * control: Remove dependency and build-dependency on csh. -- Steve M. Robbins Sun, 26 Feb 2012 01:37:47 -0600 @@ -209,7 +189,7 @@ * patches/read_file_names-refactor.patch: New. Refactored duplicated PATH_MAX-using code into library. Need to run autoreconf because Makefile.am changed. - + * rules: Fix errors and really disable tests on sparc. -- Steve M. Robbins Mon, 20 Feb 2012 15:00:32 -0600 @@ -217,10 +197,10 @@ minc (2.1.00-4) unstable; urgency=low * source/format: Set to 3.0 (quilt), so that patches are applied. - + * patches/mincaverage-pathmax.patch: New. Work around missing PATH_MAX definition; fixes FTBFS on hurd. - + * rules: Tests are buggy, but do work on most architectures. Disable on sparc. @@ -230,7 +210,7 @@ * control: Switch to (serial) libhdf5-dev, to avoid conflict with serial netcdf. Closes: #658307. - + * control: * rules: Switch from cdbs to debhelper's dh (compat level 9). @@ -253,7 +233,7 @@ * Pull upstream CVS, contains fixes for netcdf 4. Closes: #577060, #581296. - + * control: replace libhdf5-*-dev (differing by architecture) by libhdf5-mpi-dev. @@ -271,7 +251,7 @@ * patches/04_manpages.diff: * debian/patches/05_parseargv.diff: Remove; applied upstream. - + -- Steve M. Robbins Tue, 20 Jan 2009 19:37:41 -0600 minc (2.0.16-4) unstable; urgency=low @@ -279,9 +259,9 @@ * debian/patches/05_parseargv.diff: New. Patch from upstream to fix arg parsing on 64bits. Closes: #510629. This was also the root cause of mincheader and mincdiff failing. Closes: #506276. - + * debian/control: Add ${misc:Depends}, since we use debhelper. - + * debian/rules: Do not install test code acr_test, dicom_test. -- Steve M. Robbins Sat, 03 Jan 2009 16:29:06 -0600 @@ -305,7 +285,7 @@ * New upstream release. - debian/patches/02_mincedit-no-escape-chars: Remove. Applied upstream. - + * debian/control: Switch dependencies from libhdf5-serial-dev to libhdf5-openmpi-dev. * debian/rules: Add CFLAGS=-I/usr/include/mpi to configure step so that @@ -314,10 +294,10 @@ * debian/control: Remove tetex-bin from build-depends (was alternative to texlive-latex-base). Update Standards-Version to 3.8.0 (no changes). - + * debian/patches/04_manpages.diff: Fix errors in manpages, mainly removal of trailing TAB characters. - + * debian/rules: Adhere to parallel keyword in DEB_BUILD_OPTIONS. -- Steve M. Robbins Sat, 11 Oct 2008 23:55:42 -0500 @@ -339,12 +319,12 @@ [ David Paleino ] * debian/rules: - conditionally add -mieee on Alpha (Closes: #368263) - + [ Steve M. Robbins ] * debian/rules: Do not run the tests, since they are broken in many ways; e.g. int functions without a return statement, checking floating-point values without a tolerance, and some that require a - list of files on the command line but are given none. + list of files on the command line but are given none. Closes: #475808. -- Steve M. Robbins Thu, 05 Jun 2008 09:24:59 -0500 @@ -366,7 +346,7 @@ * rules: Don't install byte_swap or extract; can use "dd" instead of these tools. Closes: #459834. - + * control: Package minc-tools depends on libgetopt-tabular-perl. * rules: Don't install Tabular.pm. * Getopt-Tabular-0.3/Tabular.pm: Remove. @@ -378,21 +358,21 @@ minc (2.0.14-1) unstable; urgency=low * New upstream version. Closes: #450922. - + * control: Set Maintainer to debian-med-packaging. Add build-depends for libhdf5-serial-dev, texlive-latex-base. Rename package libminc0 --> libminc2-1. Rename package libminc0-dev --> libminc-dev. Package libminc-dev depends on libhdf5-serial-dev. Package minc-tools depends on imagemagick. - + * rules: Configure with --enable-minc2 and --enable-acr-nema. * Getopt-Tabular-0.3/Tabular.pm: New. Perl module required for mincpik and xfmflip. Closes: #457074. * patches/02_testdir-runtests.diff: New. Fix test scripts. - + * patches/03_mincview.diff: New. Use 'display' from ImageMagick rather than 'xv' to view images. Closes: #457072. @@ -406,7 +386,7 @@ * Rewrite build system using cdbs. - patches/01_mincedit-sensible-viewer.diff: New. Obtained from existing Debian diff. - + * control: Build-depend on texlive-latex-base | tetex-bin, rather than just tetex-bin. Update to Standards-Version 3.7.3 (no change required). Use ${binary:Version} rather than ${Source-Version} @@ -450,7 +430,7 @@ minc (1.4-1) unstable; urgency=low * New upstream version. - + * Omit dependency on essential package debianutils (for sensible-editor). Closes: #316425. @@ -478,7 +458,7 @@ * configure.in: Don't use AC_CONFIG_LINKS to generate link volume_io/Include/volume_io to directory volume_io/Include as autoconf 2.59 chokes on it. Use shell commands instead. - + * volume_io/Include/internal_volume_io.h: Do not include "config.h". * volume_io/Prog_utils/files.c: Do include "config.h". * volume_io/Prog_utils/time.c: Restore call to sysconf( _SC_CLK_TCK ), @@ -522,4 +502,3 @@ - progs/mincstats/mincstats.c: fix segfault -- Steve M. Robbins Mon, 29 Jul 2002 16:06:56 -0400 - diff -Nru libminc-2.4.03/debian/compat libminc-2.4.03/debian/compat --- libminc-2.4.03/debian/compat 2018-08-30 16:44:55.000000000 +0000 +++ libminc-2.4.03/debian/compat 1970-01-01 00:00:00.000000000 +0000 @@ -1 +0,0 @@ -10 diff -Nru libminc-2.4.03/debian/control libminc-2.4.03/debian/control --- libminc-2.4.03/debian/control 2020-05-06 17:13:21.000000000 +0000 +++ libminc-2.4.03/debian/control 2020-11-18 08:07:03.000000000 +0000 @@ -1,21 +1,21 @@ Source: libminc -Maintainer: Ubuntu Developers -XSBC-Original-Maintainer: Debian Med Packaging Team +Maintainer: Debian Med Packaging Team Uploaders: Steve M. Robbins , Andreas Tille Section: science Priority: optional -Build-Depends: debhelper (>= 10), - dh-exec (>=0.3), +Build-Depends: debhelper-compat (= 13), + dh-exec, cmake, libnetcdf-dev, libnifti-dev, zlib1g-dev, libhdf5-dev -Standards-Version: 4.1.4 +Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/libminc Vcs-Git: https://salsa.debian.org/med-team/libminc.git Homepage: https://github.com/BIC-MNI/libminc +Rules-Requires-Root: no Package: libminc2-5.2.0 Architecture: any @@ -28,7 +28,7 @@ This package contains the libraries libminc2 and libminc_io. . The Minc file format is a highly flexible medical image file format. - Minc version 1 is built on top of the NetCDF generalized data format. + Minc version 1 is built on top of the NetCDF generalized data format. Minc version 2 is built on top of the HDF data format. This library handles both formats. In each case the format is simple, self-describing, extensible, portable and N-dimensional, with @@ -53,7 +53,7 @@ libminc_io. . The Minc file format is a highly flexible medical image file format. - Minc version 1 is built on top of the NetCDF generalized data format. + Minc version 1 is built on top of the NetCDF generalized data format. Minc version 2 is built on top of the HDF data format. This library handles both formats. In each case the format is simple, self-describing, extensible, portable and N-dimensional, with diff -Nru libminc-2.4.03/debian/copyright libminc-2.4.03/debian/copyright --- libminc-2.4.03/debian/copyright 2018-08-30 16:44:55.000000000 +0000 +++ libminc-2.4.03/debian/copyright 2020-11-18 08:07:03.000000000 +0000 @@ -7,10 +7,10 @@ Files: * Copyright:1993-1995 David MacDonald 1993-1994 Peter Neelin - 2006-2013 Vladimir Fonov - 2003-2004 Robert Vincent - 1993-2013 McConnell Brain Imaging Centre, Montreal Neurological - Institute, McGill University. + 2006-2013 Vladimir Fonov + 2003-2004 Robert Vincent + 1993-2013 McConnell Brain Imaging Centre, Montreal Neurological + Institute, McGill University. License: as_is Permission to use, copy, modify, and distribute this software and its documentation for any purpose and without fee is hereby granted, diff -Nru libminc-2.4.03/debian/rules libminc-2.4.03/debian/rules --- libminc-2.4.03/debian/rules 2018-08-30 16:44:55.000000000 +0000 +++ libminc-2.4.03/debian/rules 2020-11-18 08:07:03.000000000 +0000 @@ -7,7 +7,7 @@ ifeq ($(DEB_BUILD_ARCH),i386) export DEB_CXXFLAGS_MAINT_APPEND=-ffloat-store export DEB_CFLAGS_MAINT_APPEND=-ffloat-store -endif +endif ARCH = $(shell dpkg-architecture -qDEB_TARGET_MULTIARCH) @@ -27,4 +27,6 @@ dh_auto_configure -- $(CMAKE_FLAGS) override_dh_auto_test: +ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) dh_auto_test --no-parallel +endif diff -Nru libminc-2.4.03/debian/salsa-ci.yml libminc-2.4.03/debian/salsa-ci.yml --- libminc-2.4.03/debian/salsa-ci.yml 1970-01-01 00:00:00.000000000 +0000 +++ libminc-2.4.03/debian/salsa-ci.yml 2020-11-18 08:07:03.000000000 +0000 @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml diff -Nru libminc-2.4.03/debian/upstream/metadata libminc-2.4.03/debian/upstream/metadata --- libminc-2.4.03/debian/upstream/metadata 1970-01-01 00:00:00.000000000 +0000 +++ libminc-2.4.03/debian/upstream/metadata 2020-11-18 08:07:03.000000000 +0000 @@ -0,0 +1,5 @@ +--- +Bug-Database: https://github.com/BIC-MNI/libminc/issues +Bug-Submit: https://github.com/BIC-MNI/libminc/issues/new +Repository: https://github.com/BIC-MNI/libminc.git +Repository-Browse: https://github.com/BIC-MNI/libminc diff -Nru libminc-2.4.03/debian/watch libminc-2.4.03/debian/watch --- libminc-2.4.03/debian/watch 2018-08-30 16:44:55.000000000 +0000 +++ libminc-2.4.03/debian/watch 2020-11-18 08:07:03.000000000 +0000 @@ -1,4 +1,4 @@ -version=3 +version=4 opts=uversionmangle=s/-/./g;s/^?(libminc|release)[-.]*// \ https://github.com/BIC-MNI/libminc/releases .*/archive/?(libminc|release)-(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)