diff -Nru njplot-2.4/debian/changelog njplot-2.4/debian/changelog --- njplot-2.4/debian/changelog 2018-07-29 06:02:57.000000000 +0000 +++ njplot-2.4/debian/changelog 2020-11-16 14:36:51.000000000 +0000 @@ -1,3 +1,18 @@ +njplot (2.4-9) unstable; urgency=medium + + * Standards-Version: 4.5.0 (routine-update) + * debhelper-compat 13 (routine-update) + * Secure URI in copyright format (routine-update) + * Remove trailing whitespace in debian/changelog (routine-update) + * Remove trailing whitespace in debian/control (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Trim trailing whitespace. + * Use secure URI in Homepage field. + * Do not quoted placeholder in mailcap entry + + -- Andreas Tille Mon, 16 Nov 2020 15:36:51 +0100 + njplot (2.4-8) unstable; urgency=medium * debhelper 11 @@ -61,7 +76,7 @@ as Vibrant has switched to Motif now that it's free. (Closes: #710205.) * debian/rules: Contrive to pass hardened CPPFLAGS and LDFLAGS. * Standards-Version: 3.9.4. (Already compliant.) - + [ Charles Plessy ] * debian/patches/fix-underlinking.patch (new): Explicitly link njplot and unrooted against -lm for compatibility with strict linkers (as on Ubuntu) @@ -227,7 +242,7 @@ njplot (0.20041129-2) unstable; urgency=low - * According to the ncbi maintainer switched back from + * According to the ncbi maintainer switched back from priority extra to optional because the package depends now are adjusted * Build-Depends now libvibrant6-dev | vibrant-dev diff -Nru njplot-2.4/debian/compat njplot-2.4/debian/compat --- njplot-2.4/debian/compat 2018-07-29 06:02:57.000000000 +0000 +++ njplot-2.4/debian/compat 1970-01-01 00:00:00.000000000 +0000 @@ -1 +0,0 @@ -11 diff -Nru njplot-2.4/debian/control njplot-2.4/debian/control --- njplot-2.4/debian/control 2018-07-29 06:02:57.000000000 +0000 +++ njplot-2.4/debian/control 2020-11-16 14:36:51.000000000 +0000 @@ -4,12 +4,13 @@ Charles Plessy Section: science Priority: optional -Build-Depends: debhelper (>= 11~), +Build-Depends: debhelper-compat (= 13), libvibrant6-dev -Standards-Version: 4.1.5 +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/njplot Vcs-Git: https://salsa.debian.org/med-team/njplot.git -Homepage: http://pbil.univ-lyon1.fr/software/njplot +Homepage: https://pbil.univ-lyon1.fr/software/njplot +Rules-Requires-Root: no Package: njplot Architecture: any @@ -20,4 +21,4 @@ phylogenetic tree format (e.g., the format used by the Phylip package). NJplot is especially convenient for rooting the unrooted trees obtained from parsimony, distance or maximum likelihood tree-building - methods. + methods. diff -Nru njplot-2.4/debian/copyright njplot-2.4/debian/copyright --- njplot-2.4/debian/copyright 2018-07-29 06:02:57.000000000 +0000 +++ njplot-2.4/debian/copyright 2020-11-16 14:36:51.000000000 +0000 @@ -1,4 +1,4 @@ -Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Source: ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/njplot/njplot-2.4.tar.gz Files: * diff -Nru njplot-2.4/debian/njplot.mime njplot-2.4/debian/njplot.mime --- njplot-2.4/debian/njplot.mime 2018-07-29 06:02:57.000000000 +0000 +++ njplot-2.4/debian/njplot.mime 2020-11-16 14:36:51.000000000 +0000 @@ -1,2 +1,2 @@ -text/x-clustalw-tree; njplot '%s'; description=Clustal W Phylogenetic Tree ; nametemplate=%s.phb -chemical/njplot; njplot '%s' ; description=Phylogenetic Tree ; nametemplate=%s.phb +text/x-clustalw-tree; njplot %s; description=Clustal W Phylogenetic Tree ; nametemplate=%s.phb +chemical/njplot; njplot %s ; description=Phylogenetic Tree ; nametemplate=%s.phb diff -Nru njplot-2.4/debian/rules njplot-2.4/debian/rules --- njplot-2.4/debian/rules 2018-07-29 06:02:57.000000000 +0000 +++ njplot-2.4/debian/rules 2020-11-16 14:36:51.000000000 +0000 @@ -4,4 +4,3 @@ %: dh $@ - diff -Nru njplot-2.4/debian/salsa-ci.yml njplot-2.4/debian/salsa-ci.yml --- njplot-2.4/debian/salsa-ci.yml 1970-01-01 00:00:00.000000000 +0000 +++ njplot-2.4/debian/salsa-ci.yml 2020-11-16 14:36:51.000000000 +0000 @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml diff -Nru njplot-2.4/debian/tests/run-unit-test njplot-2.4/debian/tests/run-unit-test --- njplot-2.4/debian/tests/run-unit-test 2018-07-29 06:02:57.000000000 +0000 +++ njplot-2.4/debian/tests/run-unit-test 2020-11-16 14:36:51.000000000 +0000 @@ -17,7 +17,7 @@ cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP cd $AUTOPKGTEST_TMP -gunzip *.gz +gunzip -r * echo "TEST START"