diff -Nru pbh5tools-0.8.0+dfsg/debian/changelog pbh5tools-0.8.0+git20170929.58d54ff+dfsg/debian/changelog --- pbh5tools-0.8.0+dfsg/debian/changelog 2017-04-11 11:40:45.000000000 +0000 +++ pbh5tools-0.8.0+git20170929.58d54ff+dfsg/debian/changelog 2018-07-13 13:58:44.000000000 +0000 @@ -1,8 +1,14 @@ -pbh5tools (0.8.0+dfsg-5build1) zesty; urgency=medium +pbh5tools (0.8.0+git20170929.58d54ff+dfsg-1) unstable; urgency=medium - * No-change rebuild to drop i386 binaries. + * Team upload. + * d/watch: use git mode + * debhelper 11 + * Point Vcs fields to salsa.debian.org + * Standards-Version: 4.1.5 + * Build-Depends: python-h5py + * DEP3 - -- Adam Conrad Tue, 11 Apr 2017 05:40:45 -0600 + -- Andreas Tille Fri, 13 Jul 2018 15:58:44 +0200 pbh5tools (0.8.0+dfsg-5) unstable; urgency=medium diff -Nru pbh5tools-0.8.0+dfsg/debian/compat pbh5tools-0.8.0+git20170929.58d54ff+dfsg/debian/compat --- pbh5tools-0.8.0+dfsg/debian/compat 2015-11-15 11:46:55.000000000 +0000 +++ pbh5tools-0.8.0+git20170929.58d54ff+dfsg/debian/compat 2018-07-13 13:58:44.000000000 +0000 @@ -1 +1 @@ -9 +11 diff -Nru pbh5tools-0.8.0+dfsg/debian/control pbh5tools-0.8.0+git20170929.58d54ff+dfsg/debian/control --- pbh5tools-0.8.0+dfsg/debian/control 2016-03-20 07:39:53.000000000 +0000 +++ pbh5tools-0.8.0+git20170929.58d54ff+dfsg/debian/control 2018-07-13 13:58:44.000000000 +0000 @@ -1,28 +1,28 @@ Source: pbh5tools -Section: science -Priority: optional Maintainer: Debian Med Packaging Team Uploaders: Afif Elghraoui -Build-Depends: debhelper (>= 9), - dh-python, - python, - python-setuptools, - python-pbcore, - python-sphinx, +Section: science +Priority: optional +Build-Depends: debhelper (>= 11~), + dh-python, + python, + python-setuptools, + python-pbcore, + python-sphinx, python-nose, - python-cram, -Standards-Version: 3.9.7 + python-h5py, + python-cram +Standards-Version: 4.1.5 +Vcs-Browser: https://salsa.debian.org/med-team/pbh5tools +Vcs-Git: https://salsa.debian.org/med-team/pbh5tools.git Homepage: https://github.com/PacificBiosciences/pbh5tools -Vcs-Git: https://anonscm.debian.org/git/debian-med/pbh5tools.git -Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/pbh5tools.git Package: pbh5tools Architecture: all -Depends: - ${misc:Depends}, - ${python:Depends}, - python-pbh5tools (>= ${binary:Version}), - python-pkg-resources, +Depends: ${misc:Depends}, + ${python:Depends}, + python-pbh5tools (>= ${binary:Version}), + python-pkg-resources Description: tools for manipulating Pacific Biosciences HDF5 files This package provides functionality for manipulating and extracting data from cmp.h5 and bas.h5 files produced by the Pacific Biosciences sequencers. @@ -32,11 +32,11 @@ This package is part of the SMRTAnalysis suite. Package: python-pbh5tools -Section: python Architecture: any +Section: python Depends: ${shlibs:Depends}, - ${misc:Depends}, - ${python:Depends}, + ${misc:Depends}, + ${python:Depends} Description: tools for manipulating Pacific Biosciences HDF5 files -- Python 2 library This package provides functionality for manipulating and extracting data from cmp.h5 and bas.h5 files produced by the Pacific Biosciences sequencers. @@ -47,11 +47,11 @@ Python 2 backend library Package: python-pbh5tools-doc -Section: doc Architecture: all +Section: doc Depends: ${misc:Depends}, - libjs-jquery, - libjs-underscore + libjs-jquery, + libjs-underscore Description: tools for manipulating HDF5 files produced by Pacific Biosciences (doc) This package provides functionality for manipulating and extracting data from cmp.h5 and bas.h5 files produced by the Pacific Biosciences sequencers. diff -Nru pbh5tools-0.8.0+dfsg/debian/patches/multiarch-module-path.patch pbh5tools-0.8.0+git20170929.58d54ff+dfsg/debian/patches/multiarch-module-path.patch --- pbh5tools-0.8.0+dfsg/debian/patches/multiarch-module-path.patch 2015-12-20 19:47:04.000000000 +0000 +++ pbh5tools-0.8.0+git20170929.58d54ff+dfsg/debian/patches/multiarch-module-path.patch 2018-07-13 13:58:44.000000000 +0000 @@ -1,3 +1,7 @@ +Author: Afif Elghraoui +Last-Update: 2016-03-20 00:45:22 -0700 +Description: Enable multiarch modules + --- python-pbh5tools.orig/pbh5tools/Indexer.py +++ python-pbh5tools/pbh5tools/Indexer.py @@ -32,10 +32,11 @@ diff -Nru pbh5tools-0.8.0+dfsg/debian/patches/series pbh5tools-0.8.0+git20170929.58d54ff+dfsg/debian/patches/series --- pbh5tools-0.8.0+dfsg/debian/patches/series 2016-03-20 07:43:39.000000000 +0000 +++ pbh5tools-0.8.0+git20170929.58d54ff+dfsg/debian/patches/series 2018-07-13 13:58:44.000000000 +0000 @@ -5,3 +5,4 @@ ignore-cram-results.patch fix-type-in-test.patch multiarch-module-path.patch +# enable-nosetests diff -Nru pbh5tools-0.8.0+dfsg/debian/upstream/metadata pbh5tools-0.8.0+git20170929.58d54ff+dfsg/debian/upstream/metadata --- pbh5tools-0.8.0+dfsg/debian/upstream/metadata 1970-01-01 00:00:00.000000000 +0000 +++ pbh5tools-0.8.0+git20170929.58d54ff+dfsg/debian/upstream/metadata 2018-07-13 13:58:44.000000000 +0000 @@ -0,0 +1,7 @@ +Registry: + - Name: OMICtools + Entry: OMICS_05138 + - Name: SciCrunch + Entry: SCR_003027 + - Name: bio.tools + Entry: NA diff -Nru pbh5tools-0.8.0+dfsg/debian/watch pbh5tools-0.8.0+git20170929.58d54ff+dfsg/debian/watch --- pbh5tools-0.8.0+dfsg/debian/watch 2015-11-15 11:46:56.000000000 +0000 +++ pbh5tools-0.8.0+git20170929.58d54ff+dfsg/debian/watch 2018-07-13 13:58:44.000000000 +0000 @@ -1,2 +1,5 @@ -# Upstream currently does not tag versions in their github repository -version=3 +version=4 + +# Upstream is not tagging releases regularly - thus we use mode=git +opts="mode=git,pretty=0.8.0+git%cd.%h,repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \ + https://github.com/PacificBiosciences/pbh5tools.git HEAD diff -Nru pbh5tools-0.8.0+dfsg/README.md pbh5tools-0.8.0+git20170929.58d54ff+dfsg/README.md --- pbh5tools-0.8.0+dfsg/README.md 2015-08-15 19:12:35.000000000 +0000 +++ pbh5tools-0.8.0+git20170929.58d54ff+dfsg/README.md 2017-09-30 01:49:17.000000000 +0000 @@ -4,3 +4,7 @@ manipulating and extracting data from "cmp.h5" and "bas.h5" files. [Detailed documentation here](doc/index.rst). + +DISCLAIMER +---------- +THIS WEBSITE AND CONTENT AND ALL SITE-RELATED SERVICES, INCLUDING ANY DATA, ARE PROVIDED "AS IS," WITH ALL FAULTS, WITH NO REPRESENTATIONS OR WARRANTIES OF ANY KIND, EITHER EXPRESS OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, ANY WARRANTIES OF MERCHANTABILITY, SATISFACTORY QUALITY, NON-INFRINGEMENT OR FITNESS FOR A PARTICULAR PURPOSE. YOU ASSUME TOTAL RESPONSIBILITY AND RISK FOR YOUR USE OF THIS SITE, ALL SITE-RELATED SERVICES, AND ANY THIRD PARTY WEBSITES OR APPLICATIONS. NO ORAL OR WRITTEN INFORMATION OR ADVICE SHALL CREATE A WARRANTY OF ANY KIND. ANY REFERENCES TO SPECIFIC PRODUCTS OR SERVICES ON THE WEBSITES DO NOT CONSTITUTE OR IMPLY A RECOMMENDATION OR ENDORSEMENT BY PACIFIC BIOSCIENCES.