diff -Nru probalign-1.4/debian/changelog probalign-1.4/debian/changelog
--- probalign-1.4/debian/changelog	2013-11-14 15:53:00.000000000 +0000
+++ probalign-1.4/debian/changelog	2015-12-17 14:03:30.000000000 +0000
@@ -1,3 +1,11 @@
+probalign (1.4-4) unstable; urgency=medium
+
+  * cme fix dpkg-control
+  * Fix Mayhem issue
+    Closes: #716548
+
+ -- Andreas Tille <tille@debian.org>  Thu, 17 Dec 2015 15:03:20 +0100
+
 probalign (1.4-3) unstable; urgency=low
 
   [ Andreas Tille ]
diff -Nru probalign-1.4/debian/control probalign-1.4/debian/control
--- probalign-1.4/debian/control	2013-11-14 15:43:13.000000000 +0000
+++ probalign-1.4/debian/control	2015-12-17 13:20:46.000000000 +0000
@@ -5,7 +5,7 @@
 Priority: optional
 Build-Depends: debhelper (>= 9),
                help2man
-Standards-Version: 3.9.4
+Standards-Version: 3.9.6
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/probalign/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/probalign/trunk/
 Homepage: http://cs.njit.edu/usman/probalign/
diff -Nru probalign-1.4/debian/patches/mayhem.patch probalign-1.4/debian/patches/mayhem.patch
--- probalign-1.4/debian/patches/mayhem.patch	1970-01-01 00:00:00.000000000 +0000
+++ probalign-1.4/debian/patches/mayhem.patch	2015-12-17 14:03:01.000000000 +0000
@@ -0,0 +1,33 @@
+Author: Andreas Tille <tille@debian.org>
+Last-Update: Thu, 17 Dec 2015 14:20:53 +0100
+Bug-Debian: https://bugs.debian.org/716548
+Description: This patch is a bit non-C++-ish but I'm not a C++
+ programmer and considered this at least a solution and code that
+ ignores getopt does not deserve more care. :-(
+
+--- a/Main.cc
++++ b/Main.cc
+@@ -535,6 +533,7 @@ SafeVector < string > ParseParams(int ar
+     
+     float tempFloat;
+     int tempInt;
++    int has_sequence_argument = 0;
+     
+     for (int i = 1; i < argc; i++)
+     {
+@@ -796,10 +795,15 @@ SafeVector < string > ParseParams(int ar
+ 	}
+ 	else
+ 	{
++	    has_sequence_argument = 1;
+ 	    sequenceNames.push_back(string(argv[i]));
+ 	}
+     }
+ 
++    if (!has_sequence_argument) {
++	cerr << "ERROR: No MFAFILE specified" << endl;
++	exit(1);
++    }
+ 
+     return sequenceNames;
+ }
diff -Nru probalign-1.4/debian/patches/series probalign-1.4/debian/patches/series
--- probalign-1.4/debian/patches/series	2013-11-14 15:51:23.000000000 +0000
+++ probalign-1.4/debian/patches/series	2015-12-17 13:24:19.000000000 +0000
@@ -1,3 +1,4 @@
 gcc_fixes.patch
 fix-gcc-4.6.patch
 hardening.patch
+mayhem.patch
File /tmp/tmpnbwrSt/J7EoVAAC4S/probalign-1.4/debian/upstream is a regular file while file /tmp/tmpnbwrSt/1iR7Sdb2hg/probalign-1.4/debian/upstream is a directory