diff -Nru probcons-1.12/debian/changelog probcons-1.12/debian/changelog --- probcons-1.12/debian/changelog 2016-07-29 23:03:28.000000000 +0000 +++ probcons-1.12/debian/changelog 2018-07-15 13:11:26.000000000 +0000 @@ -1,3 +1,18 @@ +probcons (1.12-12) unstable; urgency=medium + + [ Steffen Moeller ] + * d/upstream/metadata: + - Added references to registries + - yamllint cleanliness + + [ Andreas Tille ] + * debhelper 11 + * Point Vcs fields to salsa.debian.org + * Standards-Version: 4.1.5 + * No Priiotity: extra for probcons-extra package + + -- Andreas Tille Sun, 15 Jul 2018 15:11:26 +0200 + probcons (1.12-11) unstable; urgency=medium [ Canberk KoƧ ] diff -Nru probcons-1.12/debian/compat probcons-1.12/debian/compat --- probcons-1.12/debian/compat 2016-07-29 23:03:28.000000000 +0000 +++ probcons-1.12/debian/compat 2018-07-15 13:11:26.000000000 +0000 @@ -1 +1 @@ -9 +11 diff -Nru probcons-1.12/debian/control probcons-1.12/debian/control --- probcons-1.12/debian/control 2016-07-29 23:03:28.000000000 +0000 +++ probcons-1.12/debian/control 2018-07-15 13:11:26.000000000 +0000 @@ -4,10 +4,10 @@ Andreas Tille Section: science Priority: optional -Build-Depends: debhelper (>= 9) -Standards-Version: 3.9.8 -Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/probcons.git -Vcs-Git: https://anonscm.debian.org/git/debian-med/probcons.git +Build-Depends: debhelper (>= 11~) +Standards-Version: 4.1.5 +Vcs-Browser: https://salsa.debian.org/med-team/probcons +Vcs-Git: https://salsa.debian.org/med-team/probcons.git Homepage: http://probcons.stanford.edu/ Package: probcons @@ -28,7 +28,6 @@ Package: probcons-extra Architecture: any -Priority: extra Depends: probcons (= ${binary:Version}), ${shlibs:Depends}, ${misc:Depends} diff -Nru probcons-1.12/debian/README.Debian probcons-1.12/debian/README.Debian --- probcons-1.12/debian/README.Debian 2016-07-29 23:03:28.000000000 +0000 +++ probcons-1.12/debian/README.Debian 2018-07-15 13:11:26.000000000 +0000 @@ -5,7 +5,7 @@ probcons-extra package and renamed "pc-compare", "pc-project" and "pc-makegnuplot" to avoid collision with other program names. -* This package contains an additionnal binary which is not in the original +* This package contains an additional binary which is not in the original distribution of ProbCons: probcons-RNA. It is an experimental version of ProbCons compiled with parameters estimated via unsupervised training on BRAliBASE. The parameters were downloaded from a separate archive: diff -Nru probcons-1.12/debian/upstream/metadata probcons-1.12/debian/upstream/metadata --- probcons-1.12/debian/upstream/metadata 2016-07-29 23:03:28.000000000 +0000 +++ probcons-1.12/debian/upstream/metadata 2018-07-15 13:11:26.000000000 +0000 @@ -1,8 +1,9 @@ Contact: Chuong Do -Homepage: http://probcons.stanford.edu/ Name: ProbCons Reference: - author: Do, Chuong B. and Mahabhashyam, Mahathi S.P. and Brudno, Michael and Batzoglou, Serafim + author: > + Do, Chuong B. and Mahabhashyam, Mahathi S.P. and Brudno, Michael and + Batzoglou, Serafim title: > ProbCons: Probabilistic consistency-based multiple sequence alignment journal: Genome Research @@ -14,4 +15,10 @@ PMID: 15687296 URL: http://genome.cshlp.org/content/15/2/330.abstract eprint: http://genome.cshlp.org/content/15/2/330.full.pdf+html -Watch: http://probcons.stanford.edu/download.html probcons_v(\d+)_(\d+)\.tar\.gz +Registry: + - Name: bio.tools + Entry: probcons + - Name: SciCrunch + Entry: SCR_011813 + - Name: OMICtools + Entry: OMICS_00986