diff -Nru pynast-1.2.2/debian/changelog pynast-1.2.2/debian/changelog --- pynast-1.2.2/debian/changelog 2017-11-17 08:13:00.000000000 +0000 +++ pynast-1.2.2/debian/changelog 2018-10-23 20:53:55.000000000 +0000 @@ -1,3 +1,13 @@ +pynast (1.2.2-4) unstable; urgency=medium + + * Point Vcs-URLs to Salsa + * Remove ancient field X-Python-Version + * debhelper 11 + * Standards-Version: 4.2.1 + * s/python-sphinx/python3-sphinx/ + + -- Andreas Tille Tue, 23 Oct 2018 22:53:55 +0200 + pynast (1.2.2-3) unstable; urgency=medium * Moved packaging from SVN to Git diff -Nru pynast-1.2.2/debian/compat pynast-1.2.2/debian/compat --- pynast-1.2.2/debian/compat 2017-11-17 08:13:00.000000000 +0000 +++ pynast-1.2.2/debian/compat 2018-10-23 20:53:55.000000000 +0000 @@ -1 +1 @@ -10 +11 diff -Nru pynast-1.2.2/debian/control pynast-1.2.2/debian/control --- pynast-1.2.2/debian/control 2017-11-17 08:13:00.000000000 +0000 +++ pynast-1.2.2/debian/control 2018-10-23 20:53:55.000000000 +0000 @@ -5,19 +5,18 @@ Tim Booth Section: python Priority: optional -Build-Depends: debhelper (>= 10), +Build-Depends: debhelper (>= 11~), python, python-cogent (>= 1.5.3), - python-sphinx, + python3-sphinx, blast2, clustalw, mafft, muscle -Standards-Version: 4.1.1 -Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/pynast.git -Vcs-Git: https://anonscm.debian.org/git/debian-med/pynast.git +Standards-Version: 4.2.1 +Vcs-Browser: https://salsa.debian.org/med-team/pynast +Vcs-Git: https://salsa.debian.org/med-team/pynast.git Homepage: https://github.com/biocore/pynast -X-Python-Version: >= 2.5 Package: pynast Architecture: all diff -Nru pynast-1.2.2/debian/patches/avoid_python-mpi4py_missing_warning.patch pynast-1.2.2/debian/patches/avoid_python-mpi4py_missing_warning.patch --- pynast-1.2.2/debian/patches/avoid_python-mpi4py_missing_warning.patch 2017-11-17 08:13:00.000000000 +0000 +++ pynast-1.2.2/debian/patches/avoid_python-mpi4py_missing_warning.patch 2018-10-23 20:53:55.000000000 +0000 @@ -1,7 +1,7 @@ Author: Andreas Tille Last-Update: Mon, 11 Aug 2014 16:33:56 +0200 Description: Since we are not building with python-mpi4py (there is other - trouble occuring with this as Build-Depends) we need to strip the warning + trouble occurring with this as Build-Depends) we need to strip the warning from script output to make the test successfully passing --- a/tests/all_tests.py diff -Nru pynast-1.2.2/debian/upstream/metadata pynast-1.2.2/debian/upstream/metadata --- pynast-1.2.2/debian/upstream/metadata 2017-11-17 08:13:00.000000000 +0000 +++ pynast-1.2.2/debian/upstream/metadata 2018-10-23 20:53:55.000000000 +0000 @@ -1,13 +1,21 @@ Name: PyNAST -Homepage: http://pynast.sourceforge.net/ Reference: - Author: J. Gregory Caporaso and Kyle Bittinger and Frederic D. Bushman and Todd Z. DeSantis and Gary L. Andersen and Rob Knight - Title: > - PyNAST: a flexible tool for aligning sequences to a template alignment - Journal: Bioinformatics - Volume: 26 - Pages: 266-267. - Year: 2010 - DOI: 10.1093/bioinformatics/btp636 - PMID: 19914921 - URL: http://bioinformatics.oxfordjournals.org/content/26/2/266.long + Author: > + J. Gregory Caporaso and Kyle Bittinger and Frederic D. Bushman and + Todd Z. DeSantis and Gary L. Andersen and Rob Knight + Title: > + PyNAST: a flexible tool for aligning sequences to a template alignment + Journal: Bioinformatics + Volume: 26 + Pages: 266-267 + Year: 2010 + DOI: 10.1093/bioinformatics/btp636 + PMID: 19914921 + URL: http://bioinformatics.oxfordjournals.org/content/26/2/266.long +Registry: + - Name: SciCrunch + Entry: NA + - Name: OMICtools + Entry: OMICS_15419 + - Name: bio.tools + Entry: NA