diff -Nru python-biopython-1.78+dfsg/debian/changelog python-biopython-1.78+dfsg/debian/changelog --- python-biopython-1.78+dfsg/debian/changelog 2021-04-05 12:12:51.000000000 +0000 +++ python-biopython-1.78+dfsg/debian/changelog 2021-08-30 15:59:01.000000000 +0000 @@ -1,8 +1,19 @@ -python-biopython (1.78+dfsg-4ubuntu1) hirsute; urgency=medium +python-biopython (1.78+dfsg-5ubuntu1) impish; urgency=medium - * Depend on python3-renderpm in the autopkg tests. + * Upgrade dependency on python3-renderpm from Suggests to + Depends to fix test failure with python-reportlab 3.5.66 - -- Matthias Klose Mon, 05 Apr 2021 14:12:51 +0200 + -- Graham Inggs Mon, 30 Aug 2021 15:59:01 +0000 + +python-biopython (1.78+dfsg-5) unstable; urgency=medium + + * d/control: update uploader address + * d/watch: fix broken url to github + * d{,/tests}/control: add full_suite autopkgtest (Closes: #986410) + * Standards-Version: 4.6.0 (routine-update) + * Use secure URI in Homepage field. + + -- Étienne Mollier Sun, 22 Aug 2021 21:56:28 +0200 python-biopython (1.78+dfsg-4) unstable; urgency=medium diff -Nru python-biopython-1.78+dfsg/debian/control python-biopython-1.78+dfsg/debian/control --- python-biopython-1.78+dfsg/debian/control 2020-12-05 22:32:40.000000000 +0000 +++ python-biopython-1.78+dfsg/debian/control 2021-08-30 13:18:26.000000000 +0000 @@ -1,10 +1,13 @@ Source: python-biopython -Maintainer: Debian Med Packaging Team +Maintainer: Ubuntu Developers +XSBC-Original-Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , - Étienne Mollier + Étienne Mollier Section: python Priority: optional +# note: all build-dependencies marked , should be tested against in +# the full_suite autopkgtest as well. Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, @@ -45,10 +48,10 @@ samtools , t-coffee , wise -Standards-Version: 4.5.1 +Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/python-biopython Vcs-Git: https://salsa.debian.org/med-team/python-biopython.git -Homepage: http://biopython.org +Homepage: https://biopython.org Rules-Requires-Root: no Package: python3-biopython @@ -56,6 +59,7 @@ Depends: ${python3:Depends}, ${shlibs:Depends}, ${misc:Depends}, + python3-renderpm, python3-reportlab Recommends: python-biopython-doc (= ${source:Version}), ncbi-blast+ (>= 2.10.1-3) @@ -79,7 +83,6 @@ python3-numpy, python3-pil, python3-rdflib, - python3-renderpm, python3-psycopg2, python3-scipy, raxml, diff -Nru python-biopython-1.78+dfsg/debian/tests/control python-biopython-1.78+dfsg/debian/tests/control --- python-biopython-1.78+dfsg/debian/tests/control 2021-04-05 12:12:15.000000000 +0000 +++ python-biopython-1.78+dfsg/debian/tests/control 2021-08-30 13:17:43.000000000 +0000 @@ -1,3 +1,12 @@ -Tests: run-unit-test -Depends: @, python3-setuptools, python3-all, python3-renderpm +# autopkgtest checking dependencies are fulfilled +Features: test-name=dependencies +Test-Command: sh debian/tests/run-unit-test +Depends: @, python3-setuptools, python3-all Restrictions: allow-stderr + +# autopkgtest checking every test runs fine; dependencies list should match the +# list of build-dependencies from d/control; see #986410 for a rationale. +Features: test-name=full_suite +Test-Command: sh debian/tests/run-unit-test +Depends: @, @builddeps@ +Restrictions: allow-stderr, skip-not-installable diff -Nru python-biopython-1.78+dfsg/debian/watch python-biopython-1.78+dfsg/debian/watch --- python-biopython-1.78+dfsg/debian/watch 2020-09-09 20:43:24.000000000 +0000 +++ python-biopython-1.78+dfsg/debian/watch 2021-08-22 17:54:46.000000000 +0000 @@ -1,4 +1,11 @@ version=4 -opts="uversionmangle=s/b/~b/;s/(\d)(\d+)/$1.$2/,repacksuffix=+dfsg,dversionmangle=s/\+dfsg//,repack,compression=xz" \ - https://github.com/biopython/biopython/releases .*/archive/biopython-(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz) +opts="\ +filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE@-$1.tar.gz%,\ +uversionmangle=s/b/~b/;s/(\d)(\d+)/$1.$2/,\ +repacksuffix=+dfsg,\ +dversionmangle=s/\+dfsg//,\ +repack,\ +compression=xz" \ + https://github.com/biopython/biopython/tags \ + (?:.*?/)?biopython[v-]?(\d[\d.]*)\.tar\.gz debian uupdate