diff -Nru python-pysam-0.15.4+ds/debian/changelog python-pysam-0.15.4+ds/debian/changelog --- python-pysam-0.15.4+ds/debian/changelog 2020-04-14 03:49:01.000000000 +0000 +++ python-pysam-0.15.4+ds/debian/changelog 2020-05-08 18:27:35.000000000 +0000 @@ -1,3 +1,15 @@ +python-pysam (0.15.4+ds-3) unstable; urgency=medium + + * Remove Python2 package + Closes: #938092 + * Remove unneeded debian/gbp.conf + * Standards-Version: 4.5.0 (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Set upstream metadata fields: Bug-Submit. + + -- Andreas Tille Fri, 08 May 2020 20:27:35 +0200 + python-pysam (0.15.4+ds-2) unstable; urgency=medium * Dont run unittests for python2 binary, to reduce pytest rdeps diff -Nru python-pysam-0.15.4+ds/debian/control python-pysam-0.15.4+ds/debian/control --- python-pysam-0.15.4+ds/debian/control 2020-04-14 03:49:01.000000000 +0000 +++ python-pysam-0.15.4+ds/debian/control 2020-05-08 18:27:35.000000000 +0000 @@ -10,9 +10,6 @@ dh-python, libhts-dev (>= 1.9), zlib1g-dev, - python-all-dev, - python-setuptools, - cython (>= 0.23), python3-all-dev, python3-setuptools, cython3 (>= 0.23), @@ -20,23 +17,11 @@ samtools (>= 1.9) , bcftools (>= 1.9) , python3-pytest -Standards-Version: 4.4.1 +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/python-pysam Vcs-Git: https://salsa.debian.org/med-team/python-pysam.git Homepage: https://pysam.readthedocs.org/en/latest - -Package: python-pysam -Architecture: any -Depends: ${shlibs:Depends}, - ${misc:Depends}, - ${python:Depends} -Provides: ${python:Provides} -Description: interface for the SAM/BAM sequence alignment and mapping format (Python 2) - Pysam is a Python module for reading and manipulating Samfiles. It's a - lightweight wrapper of the samtools C-API. Pysam also includes an interface - for tabix. - . - This package installs the module for Python 2. +Rules-Requires-Root: no Package: python3-pysam Architecture: any @@ -54,7 +39,7 @@ Multi-Arch: foreign Architecture: all Depends: ${misc:Depends} -Enhances: python-pysam +Enhances: python3-pysam Description: interface for the SAM/BAM sequence alignment and mapping format (test data) Pysam is a Python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface diff -Nru python-pysam-0.15.4+ds/debian/gbp.conf python-pysam-0.15.4+ds/debian/gbp.conf --- python-pysam-0.15.4+ds/debian/gbp.conf 2020-04-14 03:49:01.000000000 +0000 +++ python-pysam-0.15.4+ds/debian/gbp.conf 1970-01-01 00:00:00.000000000 +0000 @@ -1,5 +0,0 @@ -# This source package is managed with git-buildpackage and pristine-tar. - -[DEFAULT] -# use pristine-tar: -pristine-tar = True diff -Nru python-pysam-0.15.4+ds/debian/rules python-pysam-0.15.4+ds/debian/rules --- python-pysam-0.15.4+ds/debian/rules 2020-04-14 03:49:01.000000000 +0000 +++ python-pysam-0.15.4+ds/debian/rules 2020-05-08 18:27:35.000000000 +0000 @@ -16,13 +16,11 @@ export HTSLIB_INCLUDE_DIR=/usr/include # unfortunately this does not work - any hint to fix this would be really welcome -#export PYBUILD_TEST_ARGS_python2=-k-XTestRemoteFileHTTP -k-XTestRemoteFileHTTPWithHeader #export PYBUILD_TEST_ARGS_python3=-k-XTestRemoteFileHTTP -k-XTestRemoteFileHTTPWithHeader -export PYBUILD_DISABLE_python2=test clean: clean-tests %: - dh $@ --with python2,python3 --buildsystem=pybuild + dh $@ --with python3 --buildsystem=pybuild override_dh_install: clean-tests dh_install -Xtest.gtf.gz diff -Nru python-pysam-0.15.4+ds/debian/salsa-ci.yml python-pysam-0.15.4+ds/debian/salsa-ci.yml --- python-pysam-0.15.4+ds/debian/salsa-ci.yml 1970-01-01 00:00:00.000000000 +0000 +++ python-pysam-0.15.4+ds/debian/salsa-ci.yml 2020-05-08 18:27:35.000000000 +0000 @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml diff -Nru python-pysam-0.15.4+ds/debian/upstream/metadata python-pysam-0.15.4+ds/debian/upstream/metadata --- python-pysam-0.15.4+ds/debian/upstream/metadata 2020-04-14 03:49:01.000000000 +0000 +++ python-pysam-0.15.4+ds/debian/upstream/metadata 2020-05-08 18:27:35.000000000 +0000 @@ -1,3 +1,4 @@ +Bug-Submit: https://github.com/pysam-developers/pysam/issues/new Registry: - Name: OMICtools Entry: OMICS_19073