Binary files /tmp/cJ4bv153U4/r-bioc-biobase-2.28.0/build/vignette.rds and /tmp/1FA74bEPlh/r-bioc-biobase-2.30.0/build/vignette.rds differ diff -Nru r-bioc-biobase-2.28.0/debian/changelog r-bioc-biobase-2.30.0/debian/changelog --- r-bioc-biobase-2.28.0/debian/changelog 2015-05-09 06:49:35.000000000 +0000 +++ r-bioc-biobase-2.30.0/debian/changelog 2015-10-29 16:21:32.000000000 +0000 @@ -1,3 +1,11 @@ +r-bioc-biobase (2.30.0-1) unstable; urgency=medium + + * New upstream version + * Fixed watch file + * Drop outdated paragraph from description + + -- Andreas Tille Thu, 29 Oct 2015 17:07:09 +0100 + r-bioc-biobase (2.28.0-1) unstable; urgency=medium * New upstream version diff -Nru r-bioc-biobase-2.28.0/debian/control r-bioc-biobase-2.30.0/debian/control --- r-bioc-biobase-2.28.0/debian/control 2015-05-09 06:49:35.000000000 +0000 +++ r-bioc-biobase-2.30.0/debian/control 2015-10-29 16:21:32.000000000 +0000 @@ -30,8 +30,3 @@ quite familiar with R before using Bioconductor. Bioconductor packages provide flexible interactive tools for carrying out a number of different computational tasks. - . - Most other Bioconductor packages are not packaged for Debian, but this - packages provides in its Debian documentation instructions on how to install - unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems, - that are prepared by members of the Debian Med team. diff -Nru r-bioc-biobase-2.28.0/debian/watch r-bioc-biobase-2.30.0/debian/watch --- r-bioc-biobase-2.28.0/debian/watch 2015-05-09 06:49:35.000000000 +0000 +++ r-bioc-biobase-2.30.0/debian/watch 2015-10-29 16:21:32.000000000 +0000 @@ -1,4 +1,4 @@ version=3 -# This tracks the current stable version of bioconductor -http://bioconductor.org/packages/release/bioc/html/Biobase.html .*/Biobase_(.*).tar.gz +opts=downloadurlmangle=s?^(.*)\.\.?http:$1packages/release/bioc? \ + http://bioconductor.org/packages/release/bioc/html/Biobase.html .*/Biobase_(.*).tar.gz diff -Nru r-bioc-biobase-2.28.0/DESCRIPTION r-bioc-biobase-2.30.0/DESCRIPTION --- r-bioc-biobase-2.28.0/DESCRIPTION 2015-04-17 02:06:16.000000000 +0000 +++ r-bioc-biobase-2.30.0/DESCRIPTION 2015-10-14 00:32:21.000000000 +0000 @@ -1,6 +1,6 @@ Package: Biobase Title: Biobase: Base functions for Bioconductor -Version: 2.28.0 +Version: 2.30.0 Author: R. Gentleman, V. Carey, M. Morgan, S. Falcon Description: Functions that are needed by many other packages or which replace R functions. @@ -22,4 +22,4 @@ LazyLoad: yes biocViews: Infrastructure NeedsCompilation: yes -Packaged: 2015-04-17 02:06:16 UTC; biocbuild +Packaged: 2015-10-14 00:32:21 UTC; biocbuild Binary files /tmp/cJ4bv153U4/r-bioc-biobase-2.28.0/inst/doc/BiobaseDevelopment.pdf and /tmp/1FA74bEPlh/r-bioc-biobase-2.30.0/inst/doc/BiobaseDevelopment.pdf differ Binary files /tmp/cJ4bv153U4/r-bioc-biobase-2.28.0/inst/doc/esApply.pdf and /tmp/1FA74bEPlh/r-bioc-biobase-2.30.0/inst/doc/esApply.pdf differ Binary files /tmp/cJ4bv153U4/r-bioc-biobase-2.28.0/inst/doc/ExpressionSetIntroduction.pdf and /tmp/1FA74bEPlh/r-bioc-biobase-2.30.0/inst/doc/ExpressionSetIntroduction.pdf differ diff -Nru r-bioc-biobase-2.28.0/R/methods-eSet.R r-bioc-biobase-2.30.0/R/methods-eSet.R --- r-bioc-biobase-2.28.0/R/methods-eSet.R 2015-04-16 20:12:21.000000000 +0000 +++ r-bioc-biobase-2.30.0/R/methods-eSet.R 2015-10-13 20:32:32.000000000 +0000 @@ -355,7 +355,7 @@ if (missing(drop)) drop <- FALSE if (missing(i) && missing(j)) { - if (length(list(...))!=0) + if (!missing(...)) stop("specify genes or samples to subset; use '", substitute(x), "$", names(list(...))[[1]], "' to access phenoData variables") diff -Nru r-bioc-biobase-2.28.0/R/methods-VersionsNull.R r-bioc-biobase-2.30.0/R/methods-VersionsNull.R --- r-bioc-biobase-2.28.0/R/methods-VersionsNull.R 2015-04-16 20:12:21.000000000 +0000 +++ r-bioc-biobase-2.30.0/R/methods-VersionsNull.R 2015-10-13 20:32:32.000000000 +0000 @@ -3,7 +3,7 @@ setMethod("initialize", signature(.Object="VersionsNull"), function(.Object, ...) { - if (length(list(...))) + if (!missing(...)) warning("ignoring arguments to '.VersionsNull()')") .Object })