Binary files /tmp/tmpBH9Fux/ozsYFnpil2/r-bioc-bitseq-1.32.0+dfsg/build/vignette.rds and /tmp/tmpBH9Fux/bTg7RLsMDY/r-bioc-bitseq-1.34.0+dfsg/build/vignette.rds differ diff -Nru r-bioc-bitseq-1.32.0+dfsg/debian/changelog r-bioc-bitseq-1.34.0+dfsg/debian/changelog --- r-bioc-bitseq-1.32.0+dfsg/debian/changelog 2020-05-31 06:06:06.000000000 +0000 +++ r-bioc-bitseq-1.34.0+dfsg/debian/changelog 2020-11-02 13:10:24.000000000 +0000 @@ -1,8 +1,9 @@ -r-bioc-bitseq (1.32.0+dfsg-1build1) groovy; urgency=medium +r-bioc-bitseq (1.34.0+dfsg-1) unstable; urgency=medium - * No-change rebuild against r-api-4.0 + * New upstream version + * debhelper-compat 13 (routine-update) - -- Steve Langasek Sun, 31 May 2020 06:06:06 +0000 + -- Andreas Tille Mon, 02 Nov 2020 14:10:24 +0100 r-bioc-bitseq (1.32.0+dfsg-1) unstable; urgency=medium diff -Nru r-bioc-bitseq-1.32.0+dfsg/debian/control r-bioc-bitseq-1.34.0+dfsg/debian/control --- r-bioc-bitseq-1.32.0+dfsg/debian/control 2020-05-31 06:06:05.000000000 +0000 +++ r-bioc-bitseq-1.34.0+dfsg/debian/control 2020-11-02 13:10:24.000000000 +0000 @@ -1,11 +1,10 @@ Source: r-bioc-bitseq -Maintainer: Ubuntu Developers -XSBC-Original-Maintainer: Debian R Packages Maintainers +Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Section: gnu-r Testsuite: autopkgtest-pkg-r Priority: optional -Build-Depends: debhelper-compat (= 12), +Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-rsamtools (>= 1.99.3), diff -Nru r-bioc-bitseq-1.32.0+dfsg/DESCRIPTION r-bioc-bitseq-1.34.0+dfsg/DESCRIPTION --- r-bioc-bitseq-1.32.0+dfsg/DESCRIPTION 2020-04-28 00:38:37.000000000 +0000 +++ r-bioc-bitseq-1.34.0+dfsg/DESCRIPTION 2020-10-27 22:49:20.000000000 +0000 @@ -2,7 +2,7 @@ Type: Package Title: Transcript expression inference and differential expression analysis for RNA-seq data -Version: 1.32.0 +Version: 1.34.0 Date: 2020-04-04 Author: Peter Glaus, Antti Honkela and Magnus Rattray Maintainer: Antti Honkela , Panagiotis Papastamoulis @@ -27,9 +27,9 @@ SystemRequirements: GNU make Suggests: edgeR, DESeq, BiocStyle git_url: https://git.bioconductor.org/packages/BitSeq -git_branch: RELEASE_3_11 -git_last_commit: 73e8dfc -git_last_commit_date: 2020-04-27 -Date/Publication: 2020-04-27 +git_branch: RELEASE_3_12 +git_last_commit: 46472fc +git_last_commit_date: 2020-10-27 +Date/Publication: 2020-10-27 NeedsCompilation: yes -Packaged: 2020-04-28 00:38:37 UTC; biocbuild +Packaged: 2020-10-27 22:49:20 UTC; biocbuild Binary files /tmp/tmpBH9Fux/ozsYFnpil2/r-bioc-bitseq-1.32.0+dfsg/inst/doc/BitSeq.pdf and /tmp/tmpBH9Fux/bTg7RLsMDY/r-bioc-bitseq-1.34.0+dfsg/inst/doc/BitSeq.pdf differ diff -Nru r-bioc-bitseq-1.32.0+dfsg/src/Makevars.in r-bioc-bitseq-1.34.0+dfsg/src/Makevars.in --- r-bioc-bitseq-1.32.0+dfsg/src/Makevars.in 2020-04-27 20:29:19.000000000 +0000 +++ r-bioc-bitseq-1.34.0+dfsg/src/Makevars.in 2020-10-27 17:33:30.000000000 +0000 @@ -2,10 +2,10 @@ ## have "SystemRequirements: GNU make" in the DESCRIPTION file. ## See Rhtslib's vignette for details. -RHTSLIB_LIBS=$(shell echo 'Rhtslib::pkgconfig("PKG_LIBS")'|\ - "${R_HOME}/bin/R" --vanilla --slave) -RHTSLIB_CPPFLAGS=$(shell echo 'Rhtslib::pkgconfig("PKG_CPPFLAGS")'|\ - "${R_HOME}/bin/R" --vanilla --slave) +RHTSLIB_LIBS=$(shell "${R_HOME}/bin${R_ARCH_BIN}/Rscript" -e \ + 'Rhtslib::pkgconfig("PKG_LIBS")') +RHTSLIB_CPPFLAGS=$(shell "${R_HOME}/bin${R_ARCH_BIN}/Rscript" -e \ + 'Rhtslib::pkgconfig("PKG_CPPFLAGS")') PKG_LIBS=$(RHTSLIB_LIBS) @OPENMP_CXXFLAGS@ PKG_CPPFLAGS=$(RHTSLIB_CPPFLAGS) @DEFS@ diff -Nru r-bioc-bitseq-1.32.0+dfsg/src/Makevars.win r-bioc-bitseq-1.34.0+dfsg/src/Makevars.win --- r-bioc-bitseq-1.32.0+dfsg/src/Makevars.win 2020-04-28 00:36:45.000000000 +0000 +++ r-bioc-bitseq-1.34.0+dfsg/src/Makevars.win 2020-10-27 22:47:12.000000000 +0000 @@ -1,12 +1,12 @@ -RHTSLIB_LIBS=$(shell echo 'Rhtslib::pkgconfig("PKG_LIBS")'|\ - "${R_HOME}/bin/R" --vanilla --slave) -RHTSLIB_CPPFLAGS=$(shell echo 'Rhtslib::pkgconfig("PKG_CPPFLAGS")'|\ - "${R_HOME}/bin/R" --vanilla --slave) +RHTSLIB_LIBS=$(shell "${R_HOME}/bin${R_ARCH_BIN}/Rscript" -e \ + 'Rhtslib::pkgconfig("PKG_LIBS")') +RHTSLIB_CPPFLAGS=$(shell "${R_HOME}/bin${R_ARCH_BIN}/Rscript" -e \ + 'Rhtslib::pkgconfig("PKG_CPPFLAGS")') PKG_LIBS=$(RHTSLIB_LIBS) PKG_CPPFLAGS=$(RHTSLIB_CPPFLAGS) -PKG_CPPFLAGS+=-DBS_VERSION=\"1.32.0\" -DBIOC_BUILD -I. +PKG_CPPFLAGS+=-DBS_VERSION=\"1.34.0\" -DBIOC_BUILD -I. include Makevars.common diff -Nru r-bioc-bitseq-1.32.0+dfsg/src/Makevars.win.in r-bioc-bitseq-1.34.0+dfsg/src/Makevars.win.in --- r-bioc-bitseq-1.32.0+dfsg/src/Makevars.win.in 2020-04-27 20:29:19.000000000 +0000 +++ r-bioc-bitseq-1.34.0+dfsg/src/Makevars.win.in 2020-10-27 17:33:30.000000000 +0000 @@ -1,7 +1,7 @@ -RHTSLIB_LIBS=$(shell echo 'Rhtslib::pkgconfig("PKG_LIBS")'|\ - "${R_HOME}/bin/R" --vanilla --slave) -RHTSLIB_CPPFLAGS=$(shell echo 'Rhtslib::pkgconfig("PKG_CPPFLAGS")'|\ - "${R_HOME}/bin/R" --vanilla --slave) +RHTSLIB_LIBS=$(shell "${R_HOME}/bin${R_ARCH_BIN}/Rscript" -e \ + 'Rhtslib::pkgconfig("PKG_LIBS")') +RHTSLIB_CPPFLAGS=$(shell "${R_HOME}/bin${R_ARCH_BIN}/Rscript" -e \ + 'Rhtslib::pkgconfig("PKG_CPPFLAGS")') PKG_LIBS=$(RHTSLIB_LIBS) PKG_CPPFLAGS=$(RHTSLIB_CPPFLAGS)