Binary files /tmp/tmptoponocq/ZL65qAOl6b/r-bioc-bitseq-1.38.0+dfsg/build/vignette.rds and /tmp/tmptoponocq/7BGM9u0TbI/r-bioc-bitseq-1.40.0+dfsg/build/vignette.rds differ
diff -Nru r-bioc-bitseq-1.38.0+dfsg/debian/changelog r-bioc-bitseq-1.40.0+dfsg/debian/changelog
--- r-bioc-bitseq-1.38.0+dfsg/debian/changelog	2021-11-25 11:11:18.000000000 +0000
+++ r-bioc-bitseq-1.40.0+dfsg/debian/changelog	2022-05-15 16:42:35.000000000 +0000
@@ -1,3 +1,10 @@
+r-bioc-bitseq (1.40.0+dfsg-1) unstable; urgency=medium
+
+  * New upstream version
+  * Standards-Version: 4.6.1 (routine-update)
+
+ -- Andreas Tille <tille@debian.org>  Sun, 15 May 2022 18:42:35 +0200
+
 r-bioc-bitseq (1.38.0+dfsg-1) unstable; urgency=medium
 
   * Team upload.
diff -Nru r-bioc-bitseq-1.38.0+dfsg/debian/control r-bioc-bitseq-1.40.0+dfsg/debian/control
--- r-bioc-bitseq-1.38.0+dfsg/debian/control	2021-11-25 11:10:35.000000000 +0000
+++ r-bioc-bitseq-1.40.0+dfsg/debian/control	2022-05-15 16:42:35.000000000 +0000
@@ -13,7 +13,7 @@
                r-bioc-rhtslib,
                libboost-dev,
                libcurl4-openssl-dev
-Standards-Version: 4.6.0
+Standards-Version: 4.6.1
 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-bitseq
 Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-bitseq.git
 Homepage: https://bioconductor.org/packages/BitSeq/
diff -Nru r-bioc-bitseq-1.38.0+dfsg/DESCRIPTION r-bioc-bitseq-1.40.0+dfsg/DESCRIPTION
--- r-bioc-bitseq-1.38.0+dfsg/DESCRIPTION	2021-10-26 20:58:36.000000000 +0000
+++ r-bioc-bitseq-1.40.0+dfsg/DESCRIPTION	2022-04-26 20:08:56.000000000 +0000
@@ -2,7 +2,7 @@
 Type: Package
 Title: Transcript expression inference and differential expression
         analysis for RNA-seq data
-Version: 1.38.0
+Version: 1.40.0
 Date: 2020-11-26
 Author: Peter Glaus, Antti Honkela and Magnus Rattray
 Maintainer: Antti Honkela <antti.honkela@helsinki.fi>, Panagiotis Papastamoulis <papastamoulis@aueb.gr>
@@ -27,9 +27,9 @@
 SystemRequirements: GNU make
 Suggests: BiocStyle
 git_url: https://git.bioconductor.org/packages/BitSeq
-git_branch: RELEASE_3_14
-git_last_commit: 7a8f12b
-git_last_commit_date: 2021-10-26
-Date/Publication: 2021-10-26
+git_branch: RELEASE_3_15
+git_last_commit: 66cfe24
+git_last_commit_date: 2022-04-26
+Date/Publication: 2022-04-26
 NeedsCompilation: yes
-Packaged: 2021-10-26 20:58:36 UTC; biocbuild
+Packaged: 2022-04-26 20:08:56 UTC; biocbuild
Binary files /tmp/tmptoponocq/ZL65qAOl6b/r-bioc-bitseq-1.38.0+dfsg/inst/doc/BitSeq.pdf and /tmp/tmptoponocq/7BGM9u0TbI/r-bioc-bitseq-1.40.0+dfsg/inst/doc/BitSeq.pdf differ
diff -Nru r-bioc-bitseq-1.38.0+dfsg/src/Makevars.win r-bioc-bitseq-1.40.0+dfsg/src/Makevars.win
--- r-bioc-bitseq-1.38.0+dfsg/src/Makevars.win	2021-10-26 20:56:55.000000000 +0000
+++ r-bioc-bitseq-1.40.0+dfsg/src/Makevars.win	2022-04-26 20:07:16.000000000 +0000
@@ -6,7 +6,7 @@
 PKG_LIBS=$(RHTSLIB_LIBS)
 PKG_CPPFLAGS=$(RHTSLIB_CPPFLAGS)
 
-PKG_CPPFLAGS+=-DBS_VERSION=\"1.38.0\" -DBIOC_BUILD  -I.
+PKG_CPPFLAGS+=-DBS_VERSION=\"1.40.0\" -DBIOC_BUILD  -I.
 
 include Makevars.common