diff -Nru r-bioc-fishpond-2.2.0+ds/debian/changelog r-bioc-fishpond-2.2.0+ds/debian/changelog --- r-bioc-fishpond-2.2.0+ds/debian/changelog 2022-05-16 05:11:33.000000000 +0000 +++ r-bioc-fishpond-2.2.0+ds/debian/changelog 2022-05-18 02:58:07.000000000 +0000 @@ -1,3 +1,12 @@ +r-bioc-fishpond (2.2.0+ds-2) unstable; urgency=medium + + * Team upload. + * Add test-dep on r-cran-data.table + * Add test dep on tximportdata + * Do not run tests requiring non-existing data + + -- Nilesh Patra Wed, 18 May 2022 08:28:07 +0530 + r-bioc-fishpond (2.2.0+ds-1) unstable; urgency=medium * Team upload. diff -Nru r-bioc-fishpond-2.2.0+ds/debian/tests/autopkgtest-pkg-r.conf r-bioc-fishpond-2.2.0+ds/debian/tests/autopkgtest-pkg-r.conf --- r-bioc-fishpond-2.2.0+ds/debian/tests/autopkgtest-pkg-r.conf 2022-05-16 05:11:33.000000000 +0000 +++ r-bioc-fishpond-2.2.0+ds/debian/tests/autopkgtest-pkg-r.conf 2022-05-18 02:58:07.000000000 +0000 @@ -1 +1 @@ -extra_depends=r-cran-testthat,r-cran-samr,r-bioc-deseq2 +extra_depends=r-cran-testthat,r-cran-samr,r-bioc-deseq2,r-cran-data.table,r-bioc-tximportdata diff -Nru r-bioc-fishpond-2.2.0+ds/debian/tests/autopkgtest-pkg-r.hook r-bioc-fishpond-2.2.0+ds/debian/tests/autopkgtest-pkg-r.hook --- r-bioc-fishpond-2.2.0+ds/debian/tests/autopkgtest-pkg-r.hook 1970-01-01 00:00:00.000000000 +0000 +++ r-bioc-fishpond-2.2.0+ds/debian/tests/autopkgtest-pkg-r.hook 2022-05-18 02:58:07.000000000 +0000 @@ -0,0 +1,3 @@ +#!/bin/sh -e + +rm -f tests/testthat/test_alevinEC.R tests/testthat/test_salmonEC.R diff -Nru r-bioc-fishpond-2.2.0+ds/debian/tests/control r-bioc-fishpond-2.2.0+ds/debian/tests/control --- r-bioc-fishpond-2.2.0+ds/debian/tests/control 2022-05-16 05:11:33.000000000 +0000 +++ r-bioc-fishpond-2.2.0+ds/debian/tests/control 2022-05-18 02:58:07.000000000 +0000 @@ -1,3 +1,3 @@ Tests: run-unit-test -Depends: @, r-cran-testthat, r-cran-samr, r-bioc-deseq2 +Depends: @, r-cran-testthat, r-cran-samr, r-bioc-deseq2, r-cran-data.table, r-bioc-tximportdata Restrictions: allow-stderr diff -Nru r-bioc-fishpond-2.2.0+ds/debian/tests/run-unit-test r-bioc-fishpond-2.2.0+ds/debian/tests/run-unit-test --- r-bioc-fishpond-2.2.0+ds/debian/tests/run-unit-test 2022-05-16 05:11:33.000000000 +0000 +++ r-bioc-fishpond-2.2.0+ds/debian/tests/run-unit-test 2022-05-18 02:58:07.000000000 +0000 @@ -9,6 +9,8 @@ cd $AUTOPKGTEST_TMP cp -a /usr/share/doc/$debname/tests $AUTOPKGTEST_TMP gunzip -r * + +rm -f tests/testthat/test_alevinEC.R tests/testthat/test_salmonEC.R cd tests for testfile in *.R; do echo "BEGIN TEST $testfile"