diff -Nru r-bioc-geoquery-2.58.0+dfsg/debian/changelog r-bioc-geoquery-2.58.0+dfsg/debian/changelog --- r-bioc-geoquery-2.58.0+dfsg/debian/changelog 2020-11-02 13:52:45.000000000 +0000 +++ r-bioc-geoquery-2.58.0+dfsg/debian/changelog 2021-01-26 07:35:51.000000000 +0000 @@ -1,3 +1,12 @@ +r-bioc-geoquery (2.58.0+dfsg-2) unstable; urgency=medium + + * Team upload. + * Skip flaky test which are loading large amounts of data + Closes: #980740 + * Standards-Version: 4.5.1 (routine-update) + + -- Andreas Tille Tue, 26 Jan 2021 08:35:51 +0100 + r-bioc-geoquery (2.58.0+dfsg-1) unstable; urgency=medium * Team upload. diff -Nru r-bioc-geoquery-2.58.0+dfsg/debian/control r-bioc-geoquery-2.58.0+dfsg/debian/control --- r-bioc-geoquery-2.58.0+dfsg/debian/control 2020-11-02 13:52:45.000000000 +0000 +++ r-bioc-geoquery-2.58.0+dfsg/debian/control 2021-01-26 07:35:51.000000000 +0000 @@ -15,7 +15,7 @@ r-cran-tidyr, r-cran-magrittr, r-bioc-limma -Standards-Version: 4.5.0 +Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-geoquery Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-geoquery.git Homepage: https://bioconductor.org/packages/GEOquery/ diff -Nru r-bioc-geoquery-2.58.0+dfsg/debian/tests/run-unit-test r-bioc-geoquery-2.58.0+dfsg/debian/tests/run-unit-test --- r-bioc-geoquery-2.58.0+dfsg/debian/tests/run-unit-test 2020-11-02 13:52:45.000000000 +0000 +++ r-bioc-geoquery-2.58.0+dfsg/debian/tests/run-unit-test 2021-01-26 07:35:51.000000000 +0000 @@ -8,8 +8,16 @@ trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM fi cd $AUTOPKGTEST_TMP -cp -a /usr/share/doc/$debname/tests/* $AUTOPKGTEST_TMP +cp -a /usr/share/doc/$debname/tests $AUTOPKGTEST_TMP gunzip -r * +cd tests + +# Remove tests that seem to download extraordinary large data sets which makes the test flaky +rm -f testthat/test_GSE.R \ + testthat/test_fetch_GPL_false.R \ + testthat/test_GPL.R \ + testthat/test_GSE.R + for testfile in *.R; do echo "BEGIN TEST $testfile" LC_ALL=C.UTF-8 R --no-save < $testfile