Binary files /tmp/tmpz4y9dpbo/nlFRj5UFlZ/r-bioc-netsam-1.36.0/build/vignette.rds and /tmp/tmpz4y9dpbo/l2kKeImwUi/r-bioc-netsam-1.38.0/build/vignette.rds differ diff -Nru r-bioc-netsam-1.36.0/debian/changelog r-bioc-netsam-1.38.0/debian/changelog --- r-bioc-netsam-1.36.0/debian/changelog 2022-05-18 12:46:01.000000000 +0000 +++ r-bioc-netsam-1.38.0/debian/changelog 2022-11-23 07:30:00.000000000 +0000 @@ -1,3 +1,11 @@ +r-bioc-netsam (1.38.0-1) unstable; urgency=medium + + * Team upload. + * New upstream version + * Reduce piuparts noise in transitions (routine-update) + + -- Andreas Tille Wed, 23 Nov 2022 08:30:00 +0100 + r-bioc-netsam (1.36.0-1) unstable; urgency=medium * Team upload. diff -Nru r-bioc-netsam-1.36.0/debian/copyright r-bioc-netsam-1.38.0/debian/copyright --- r-bioc-netsam-1.36.0/debian/copyright 2022-05-18 12:46:01.000000000 +0000 +++ r-bioc-netsam-1.38.0/debian/copyright 2022-11-23 07:30:00.000000000 +0000 @@ -8,331 +8,10 @@ Bing Zhang License: LGPL-2 -Files: vignettes/underscore.sty -Copyright: 1998-2006 Donald Arseneau -License: LPPL-1.2+ - Files: debian/* Copyright: 2021 Nilesh Patra License: LGPL-2 -License: LPPL-1.2+ - The LaTeX Project Public License - =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- - . - LPPL Version 1.2 1999-09-03 - . - Copyright 1999 LaTeX3 Project - Everyone is allowed to distribute verbatim copies of this - license document, but modification of it is not allowed. - . - . - PREAMBLE - ======== - . - The LaTeX Project Public License (LPPL) is the license under which the - base LaTeX distribution is distributed. - . - You may use this license for any program that you have written and wish - to distribute. 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Name - % - % This program may be distributed and/or modified under the - % conditions of the LaTeX Project Public License, either version 1.2 - % of this license or (at your option) any later version. - % The latest version of this license is in - % http://www.latex-project.org/lppl.txt - % and version 1.2 or later is part of all distributions of LaTeX - % version 1999/12/01 or later. - % - % This program consists of the files pig.dtx and pig.ins - . - Given such a notice and statement in a file, the conditions given in - this license document would apply, with `The Program' referring to the - two files `pig.dtx' and `pig.ins', and `The Copyright Holder' referring - to the person `M. Y. Name'. - . - . - Important Recommendations - ------------------------- - . - Defining What Constitutes The Program - . - The LPPL requires that distributions of The Program contain all the - files of The Program. It is therefore important that you provide a - way for the licensee to determine which files constitute The Program. - This could, for example, be achieved by explicitly listing all the - files of The Program near the copyright notice of each file or by - using a line like - . - % This program consists of all files listed in manifest.txt. - . - in that place. In the absence of an unequivocal list it might be - impossible for the licensee to determine what is considered by you - to comprise The Program. - . - Noting Exceptional Files - . - If The Program contains any files bearing additional conditions on - modification, or on distribution of modified versions, of those - files (other than those listed in `Additional Conditions on LaTeX - Software Files'), then it is recommended that The Program contain a - prominent file that defines the exceptional conditions, and either - lists the exceptional files or defines one or more categories of - exceptional files. - . - Files containing the text of a license (such as this file) are - often examples of files bearing more restrictive conditions on - modification. LaTeX configuration files (with filename extension - `.cfg') are examples of files bearing less restrictive conditions - on the distribution of a modified version of the file. The - additional conditions on LaTeX software given above are examples - of declaring a category of files bearing exceptional additional - conditions. - - License: LGPL-2 This program is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by diff -Nru r-bioc-netsam-1.36.0/debian/salsa-ci.yml r-bioc-netsam-1.38.0/debian/salsa-ci.yml --- r-bioc-netsam-1.36.0/debian/salsa-ci.yml 2022-05-18 12:46:01.000000000 +0000 +++ r-bioc-netsam-1.38.0/debian/salsa-ci.yml 2022-11-23 07:30:00.000000000 +0000 @@ -8,3 +8,7 @@ # Uncomment the following two lines if this package is affected. variables: SALSA_CI_DISABLE_REPROTEST: 1 + +# Reduce piuparts noise in transitions +piuparts: + allow_failure: true diff -Nru r-bioc-netsam-1.36.0/DESCRIPTION r-bioc-netsam-1.38.0/DESCRIPTION --- r-bioc-netsam-1.36.0/DESCRIPTION 2022-04-26 21:18:18.000000000 +0000 +++ r-bioc-netsam-1.38.0/DESCRIPTION 2022-11-01 22:11:57.000000000 +0000 @@ -1,7 +1,7 @@ Package: NetSAM Type: Package Title: Network Seriation And Modularization -Version: 1.36.0 +Version: 1.38.0 Date: 2021-05-15 Author: Jing Wang Maintainer: Zhiao Shi @@ -22,9 +22,9 @@ GOAssociation.R mergeDuplicate.R NeedsCompilation: no VignetteBuilder: knitr -Packaged: 2022-04-26 21:18:18 UTC; biocbuild +Packaged: 2022-11-01 22:11:57 UTC; biocbuild git_url: https://git.bioconductor.org/packages/NetSAM -git_branch: RELEASE_3_15 -git_last_commit: 2e11a02 -git_last_commit_date: 2022-04-26 -Date/Publication: 2022-04-26 +git_branch: RELEASE_3_16 +git_last_commit: dd9a6db +git_last_commit_date: 2022-11-01 +Date/Publication: 2022-11-01 Binary files /tmp/tmpz4y9dpbo/nlFRj5UFlZ/r-bioc-netsam-1.36.0/inst/doc/NetSAM.pdf and /tmp/tmpz4y9dpbo/l2kKeImwUi/r-bioc-netsam-1.38.0/inst/doc/NetSAM.pdf differ