diff -Nru r-bioc-tfbstools-1.36.0+dfsg/debian/changelog r-bioc-tfbstools-1.36.0+dfsg/debian/changelog --- r-bioc-tfbstools-1.36.0+dfsg/debian/changelog 2022-11-21 21:09:36.000000000 +0000 +++ r-bioc-tfbstools-1.36.0+dfsg/debian/changelog 2022-11-29 07:47:36.000000000 +0000 @@ -1,3 +1,11 @@ +r-bioc-tfbstools (1.36.0+dfsg-2) unstable; urgency=medium + + * Disable reprotest + * Provide autopkgtest-pkg-r.conf to make sure testthat will be found + * Drop debian/tests/control and rely on autopkgtest-pkg-r + + -- Andreas Tille Tue, 29 Nov 2022 08:47:36 +0100 + r-bioc-tfbstools (1.36.0+dfsg-1) unstable; urgency=medium * New upstream version diff -Nru r-bioc-tfbstools-1.36.0+dfsg/debian/docs r-bioc-tfbstools-1.36.0+dfsg/debian/docs --- r-bioc-tfbstools-1.36.0+dfsg/debian/docs 2022-11-21 21:09:36.000000000 +0000 +++ r-bioc-tfbstools-1.36.0+dfsg/debian/docs 1970-01-01 00:00:00.000000000 +0000 @@ -1,2 +0,0 @@ -debian/tests/run-unit-test -tests diff -Nru r-bioc-tfbstools-1.36.0+dfsg/debian/salsa-ci.yml r-bioc-tfbstools-1.36.0+dfsg/debian/salsa-ci.yml --- r-bioc-tfbstools-1.36.0+dfsg/debian/salsa-ci.yml 2022-11-21 21:09:36.000000000 +0000 +++ r-bioc-tfbstools-1.36.0+dfsg/debian/salsa-ci.yml 2022-11-29 07:47:36.000000000 +0000 @@ -6,3 +6,8 @@ # Reduce piuparts noise in transitions piuparts: allow_failure: true +# R creates .rdb files and .rds with some randomness. +# https://tests.reproducible-builds.org/debian/issues/unstable/randomness_in_r_rdb_rds_databases_issue.html +# Thus reprotest is disabled here +variables: + SALSA_CI_DISABLE_REPROTEST: 1 diff -Nru r-bioc-tfbstools-1.36.0+dfsg/debian/tests/autopkgtest-pkg-r.conf r-bioc-tfbstools-1.36.0+dfsg/debian/tests/autopkgtest-pkg-r.conf --- r-bioc-tfbstools-1.36.0+dfsg/debian/tests/autopkgtest-pkg-r.conf 1970-01-01 00:00:00.000000000 +0000 +++ r-bioc-tfbstools-1.36.0+dfsg/debian/tests/autopkgtest-pkg-r.conf 2022-11-29 07:47:36.000000000 +0000 @@ -0,0 +1 @@ +extra_depends=r-cran-testthat diff -Nru r-bioc-tfbstools-1.36.0+dfsg/debian/tests/control r-bioc-tfbstools-1.36.0+dfsg/debian/tests/control --- r-bioc-tfbstools-1.36.0+dfsg/debian/tests/control 2022-11-21 21:09:36.000000000 +0000 +++ r-bioc-tfbstools-1.36.0+dfsg/debian/tests/control 1970-01-01 00:00:00.000000000 +0000 @@ -1,5 +0,0 @@ -Tests: run-unit-test -Depends: @, r-cran-testthat, -Restrictions: allow-stderr - - diff -Nru r-bioc-tfbstools-1.36.0+dfsg/debian/tests/run-unit-test r-bioc-tfbstools-1.36.0+dfsg/debian/tests/run-unit-test --- r-bioc-tfbstools-1.36.0+dfsg/debian/tests/run-unit-test 2022-11-21 21:09:36.000000000 +0000 +++ r-bioc-tfbstools-1.36.0+dfsg/debian/tests/run-unit-test 1970-01-01 00:00:00.000000000 +0000 @@ -1,18 +0,0 @@ -#!/bin/sh -e - -pkgname=TFBSTools -debname=r-bioc-tfbstools - -if [ "$AUTOPKGTEST_TMP" = "" ] ; then - AUTOPKGTEST_TMP=`mktemp -d /tmp/${debname}-test.XXXXXX` - trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM -fi -cd $AUTOPKGTEST_TMP -cp -a /usr/share/doc/$debname/tests/* $AUTOPKGTEST_TMP -gunzip -r * - -for testfile in *.R; do - echo "BEGIN TEST $testfile" - LC_ALL=C R --no-save < $testfile -done -