diff -Nru r-cran-adephylo-1.1-11/debian/changelog r-cran-adephylo-1.1-11/debian/changelog --- r-cran-adephylo-1.1-11/debian/changelog 2020-05-31 06:10:56.000000000 +0000 +++ r-cran-adephylo-1.1-11/debian/changelog 2020-09-02 11:46:01.000000000 +0000 @@ -1,8 +1,14 @@ -r-cran-adephylo (1.1-11-3build1) groovy; urgency=medium +r-cran-adephylo (1.1-11-4) unstable; urgency=medium - * No-change rebuild against r-api-4.0 + * Standards-Version: 4.5.0 (routine-update) + * debhelper-compat 13 (routine-update) + * Testsuite: autopkgtest-pkg-r (routine-update) + * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Set upstream metadata fields: Archive. - -- Steve Langasek Sun, 31 May 2020 06:10:56 +0000 + -- Andreas Tille Wed, 02 Sep 2020 13:46:01 +0200 r-cran-adephylo (1.1-11-3) unstable; urgency=medium diff -Nru r-cran-adephylo-1.1-11/debian/compat r-cran-adephylo-1.1-11/debian/compat --- r-cran-adephylo-1.1-11/debian/compat 2018-06-14 11:30:57.000000000 +0000 +++ r-cran-adephylo-1.1-11/debian/compat 1970-01-01 00:00:00.000000000 +0000 @@ -1 +0,0 @@ -11 diff -Nru r-cran-adephylo-1.1-11/debian/control r-cran-adephylo-1.1-11/debian/control --- r-cran-adephylo-1.1-11/debian/control 2020-05-31 06:10:56.000000000 +0000 +++ r-cran-adephylo-1.1-11/debian/control 2020-09-02 11:46:01.000000000 +0000 @@ -1,20 +1,21 @@ Source: r-cran-adephylo -Maintainer: Ubuntu Developers -XSBC-Original-Maintainer: Debian R Packages Maintainers +Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Section: gnu-r +Testsuite: autopkgtest-pkg-r Priority: optional -Build-Depends: debhelper (>= 11~), +Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-ade4, r-cran-phylobase, r-cran-ape, r-cran-adegenet -Standards-Version: 4.1.4 +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-cran-adephylo Vcs-Git: https://salsa.debian.org/r-pkg-team/r-cran-adephylo.git Homepage: https://cran.r-project.org/package=adephylo +Rules-Requires-Root: no Package: r-cran-adephylo Architecture: any diff -Nru r-cran-adephylo-1.1-11/debian/salsa-ci.yml r-cran-adephylo-1.1-11/debian/salsa-ci.yml --- r-cran-adephylo-1.1-11/debian/salsa-ci.yml 1970-01-01 00:00:00.000000000 +0000 +++ r-cran-adephylo-1.1-11/debian/salsa-ci.yml 2020-09-02 11:46:01.000000000 +0000 @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml diff -Nru r-cran-adephylo-1.1-11/debian/tests/run-unit-test r-cran-adephylo-1.1-11/debian/tests/run-unit-test --- r-cran-adephylo-1.1-11/debian/tests/run-unit-test 2018-06-14 11:30:57.000000000 +0000 +++ r-cran-adephylo-1.1-11/debian/tests/run-unit-test 2020-09-02 11:46:01.000000000 +0000 @@ -2,12 +2,12 @@ oname=adephylo pkg=r-cran-`echo $oname | tr '[A-Z]' '[a-z]'` -if [ "$ADTTMP" = "" ] ; then - ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` - trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM +if [ "$AUTOPKGTEST_TMP" = "" ] ; then + AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` + trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM fi -cd $ADTTMP -cp -a /usr/share/doc/$pkg/examples/vignettes/* $ADTTMP +cd $AUTOPKGTEST_TMP +cp -a /usr/share/doc/$pkg/examples/vignettes/* $AUTOPKGTEST_TMP find . -name "*.gz" -exec gunzip \{\} \; for rnw in `ls *.[rRS]nw` ; do rfile=`echo $rnw | sed 's/\.[rRS]nw/.R/'` diff -Nru r-cran-adephylo-1.1-11/debian/upstream/metadata r-cran-adephylo-1.1-11/debian/upstream/metadata --- r-cran-adephylo-1.1-11/debian/upstream/metadata 2018-06-14 11:30:57.000000000 +0000 +++ r-cran-adephylo-1.1-11/debian/upstream/metadata 2020-09-02 11:46:01.000000000 +0000 @@ -1,12 +1,25 @@ +Archive: CRAN Reference: - Author: Thibaut Jombart and François Balloux and Stéphane Dray - Title: "adephylo: new tools for investigating the phylogenetic signal in biological traits" - Journal: Bioinformatics - Year: 2010 - Volume: 26 - Number: 15 - Pages: 1907-1909 - DOI: 10.1093/bioinformatics/btq292 - PMID: 20525823 - URL: http://bioinformatics.oxfordjournals.org/content/26/15/1907 - eprint: http://bioinformatics.oxfordjournals.org/content/26/15/1907.full.pdf+html + Author: Thibaut Jombart and François Balloux and Stéphane Dray + Title: > + adephylo: new tools for investigating the phylogenetic signal in biological + traits + Journal: Bioinformatics + Year: 2010 + Volume: 26 + Number: 15 + Pages: 1907-1909 + DOI: 10.1093/bioinformatics/btq292 + PMID: 20525823 + URL: http://bioinformatics.oxfordjournals.org/content/26/15/1907 + ePrint: > + http://bioinformatics.oxfordjournals.org/content/26/15/1907.full.pdf+html +Registry: + - Name: OMICtools + Entry: OMICS_08682 + - Name: bio.tools + Entry: NA + - Name: SciCrunch + Entry: NA + - Name: conda:bioconda + Entry: r-adephylo