diff -Nru r-cran-genetics-1.3.8.1/debian/changelog r-cran-genetics-1.3.8.1/debian/changelog --- r-cran-genetics-1.3.8.1/debian/changelog 2017-09-28 10:33:36.000000000 +0000 +++ r-cran-genetics-1.3.8.1/debian/changelog 2017-10-19 16:18:51.000000000 +0000 @@ -1,8 +1,15 @@ -r-cran-genetics (1.3.8.1-1build1) artful; urgency=medium +r-cran-genetics (1.3.8.1-2) unstable; urgency=medium - * No-change rebuild to pick up r-api-3.4 + * Moved packaging from SVN to Git + * Standards-Version: 4.1.1 + * debhelper 10 + * Convert from cdbs to dh-r + * Secure URI in watch file + * Canonical homepage for CRAN packages + * Review d/copyright + * Add README.source to document binary data files - -- Graham Inggs Thu, 28 Sep 2017 10:33:36 +0000 + -- Andreas Tille Thu, 19 Oct 2017 18:18:51 +0200 r-cran-genetics (1.3.8.1-1) unstable; urgency=medium diff -Nru r-cran-genetics-1.3.8.1/debian/compat r-cran-genetics-1.3.8.1/debian/compat --- r-cran-genetics-1.3.8.1/debian/compat 2013-05-01 00:33:02.000000000 +0000 +++ r-cran-genetics-1.3.8.1/debian/compat 2017-10-19 15:31:07.000000000 +0000 @@ -1 +1 @@ -9 +10 diff -Nru r-cran-genetics-1.3.8.1/debian/control r-cran-genetics-1.3.8.1/debian/control --- r-cran-genetics-1.3.8.1/debian/control 2014-06-28 06:40:04.000000000 +0000 +++ r-cran-genetics-1.3.8.1/debian/control 2017-10-19 15:34:45.000000000 +0000 @@ -5,30 +5,24 @@ Andreas Tille Section: gnu-r Priority: optional -Testsuite: autopkgtest -Build-Depends: debhelper (>= 9), - cdbs, - r-base-dev, +Build-Depends: debhelper (>= 10), + dh-r, r-cran-combinat, r-cran-mvtnorm, r-cran-gdata, r-cran-gtools, r-cran-mass -Standards-Version: 3.9.5 -Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-genetics/trunk/ -Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-genetics/trunk/ -Homepage: http://cran.r-project.org/web/packages/genetics +Standards-Version: 4.1.1 +Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/r-cran-genetics.git +Vcs-Git: https://anonscm.debian.org/git/debian-med/r-cran-genetics.git +Homepage: https://cran.r-project.org/package=genetics Package: r-cran-genetics Architecture: all Depends: ${R:Depends}, - ${misc:Depends}, - r-recommended, - r-cran-gtools, - r-cran-gdata, - r-cran-combinat, - r-cran-mvtnorm, - r-cran-mass + ${misc:Depends} +Recommends: ${R:Recommends} +Suggests: ${R:Suggests} Description: GNU R package for population genetics Classes and methods for handling genetic data. Includes The package provides a library for the statistics environment R that diff -Nru r-cran-genetics-1.3.8.1/debian/copyright r-cran-genetics-1.3.8.1/debian/copyright --- r-cran-genetics-1.3.8.1/debian/copyright 2013-05-01 00:35:28.000000000 +0000 +++ r-cran-genetics-1.3.8.1/debian/copyright 2017-10-19 15:37:43.000000000 +0000 @@ -1,5 +1,7 @@ -Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ -Source: http://cran.r-project.org/src/contrib/genetics_1.3.8.tar.gz +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: genetics +Upstream-Contact: Gregory Warnes +Source: https://cran.r-project.org/package=genetics Files: * Copyright: Genetics is copyright 2003-2008 of Gregory Warnes , @@ -8,21 +10,6 @@ Friedrich Leisch, and Michael Man. License: GPL-2+ - This program is free software; you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation; either version 2 of the License, or - (at your option) any later version. - . - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - . - You should have received a copy of the GNU General Public License along - with this program; if not, write to the Free Software Foundation, Inc., - 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. -Comment: On a Debian GNU/Linux system, the GNU General Public License - version 2 is included in the file ‘/usr/share/common-licenses/GPL-2’. Files: inst/doc/Rnews.sty Copyright: see the source file. @@ -41,9 +28,25 @@ in the same archive or directory.) Files: debian/* -Copyright: © 2008 Steffen Moeller -License: same-as-genetics - This package was created by Steffen Moeller , - based on work for the r-cran-rodbc package of Dirk - Eddelbuettel . +Copyright: 2008-2011 Steffen Moeller + 2011-2013 Charles Plessy + 2009-2017 Andreas Tille +License: GPL-2+ +License: GPL-2+ + This program is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + . + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License along + with this program; if not, write to the Free Software Foundation, Inc., + 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. + . + On a Debian GNU/Linux system, the GNU General Public License + version 2 is included in the file ‘/usr/share/common-licenses/GPL-2’. diff -Nru r-cran-genetics-1.3.8.1/debian/README.source r-cran-genetics-1.3.8.1/debian/README.source --- r-cran-genetics-1.3.8.1/debian/README.source 1970-01-01 00:00:00.000000000 +0000 +++ r-cran-genetics-1.3.8.1/debian/README.source 2017-10-19 16:11:52.000000000 +0000 @@ -0,0 +1,9 @@ +Explanation for binary files inside source package according to + http://lists.debian.org/debian-devel/2013/09/msg00332.html + +Files: data/gregorius.rda +Documentation: man/gregorius.Rd + Probability of Observing All Alleles with a Given Frequency in a + Sample of a Specified Size + + -- Andreas Tille Thu, 19 Oct 2017 17:38:31 +0200 diff -Nru r-cran-genetics-1.3.8.1/debian/rules r-cran-genetics-1.3.8.1/debian/rules --- r-cran-genetics-1.3.8.1/debian/rules 2013-05-01 00:34:02.000000000 +0000 +++ r-cran-genetics-1.3.8.1/debian/rules 2017-10-19 15:32:51.000000000 +0000 @@ -1,6 +1,11 @@ #!/usr/bin/make -f -include /usr/share/R/debian/r-cran.mk +include /usr/share/dpkg/default.mk -install/$(package):: - chmod 644 debian/$(package)/usr/lib/R/site-library/genetics/doc/*.pdf + +%: + dh $@ --buildsystem R + +override_dh_fixperms: + dh_fixperms + find debian -type f -name "*.pdf" -exec chmod -x \{\} \; diff -Nru r-cran-genetics-1.3.8.1/debian/watch r-cran-genetics-1.3.8.1/debian/watch --- r-cran-genetics-1.3.8.1/debian/watch 2008-07-23 19:09:31.000000000 +0000 +++ r-cran-genetics-1.3.8.1/debian/watch 2017-10-19 15:33:58.000000000 +0000 @@ -1,3 +1,3 @@ -version=3 -http://cran.r-project.org/src/contrib/genetics_([-0-9\.]*)\.tar\.gz +version=4 +https://cran.r-project.org/src/contrib/genetics_([-0-9\.]*)\.tar\.gz