diff -Nru r-cran-mass-7.3-48/debian/changelog r-cran-mass-7.3-49/debian/changelog --- r-cran-mass-7.3-48/debian/changelog 2018-02-23 17:08:56.000000000 +0000 +++ r-cran-mass-7.3-49/debian/changelog 2018-02-23 17:08:56.000000000 +0000 @@ -1,3 +1,11 @@ +r-cran-mass (7.3-49-1) unstable; urgency=medium + + * New upstream release + + * debian/control: Set Standards-Version: to current version + + -- Dirk Eddelbuettel Fri, 23 Feb 2018 07:03:18 -0600 + r-cran-mass (7.3-48-1) unstable; urgency=medium * New upstream release diff -Nru r-cran-mass-7.3-48/debian/control r-cran-mass-7.3-49/debian/control --- r-cran-mass-7.3-48/debian/control 2018-02-23 17:08:56.000000000 +0000 +++ r-cran-mass-7.3-49/debian/control 2018-02-23 17:08:56.000000000 +0000 @@ -3,7 +3,7 @@ Priority: optional Maintainer: Dirk Eddelbuettel Build-Depends: debhelper (>= 7.0.0), r-base-dev (>= 3.4.3), cdbs -Standards-Version: 4.1.1 +Standards-Version: 4.1.3 Homepage: http://cran.r-project.org/web/packages/MASS/index.html Package: r-cran-mass diff -Nru r-cran-mass-7.3-48/DESCRIPTION r-cran-mass-7.3-49/DESCRIPTION --- r-cran-mass-7.3-48/DESCRIPTION 2017-12-24 21:44:17.000000000 +0000 +++ r-cran-mass-7.3-49/DESCRIPTION 2018-02-23 08:09:50.000000000 +0000 @@ -1,8 +1,8 @@ Package: MASS Priority: recommended -Version: 7.3-48 -Date: 2017-12-24 -Revision: $Rev: 3474 $ +Version: 7.3-49 +Date: 2018-02-23 +Revision: $Rev: 3481 $ Depends: R (>= 3.1.0), grDevices, graphics, stats, utils Imports: methods Suggests: lattice, nlme, nnet, survival @@ -24,7 +24,7 @@ URL: http://www.stats.ox.ac.uk/pub/MASS4/ Contact: NeedsCompilation: yes -Packaged: 2017-12-24 13:56:45 UTC; ripley +Packaged: 2018-02-23 05:49:55 UTC; ripley Author: Brian Ripley [aut, cre, cph], Bill Venables [ctb], Douglas M. Bates [ctb], @@ -33,4 +33,4 @@ David Firth [ctb] Maintainer: Brian Ripley Repository: CRAN -Date/Publication: 2017-12-24 21:44:17 UTC +Date/Publication: 2018-02-23 08:09:50 UTC diff -Nru r-cran-mass-7.3-48/man/fitdistr.Rd r-cran-mass-7.3-49/man/fitdistr.Rd --- r-cran-mass-7.3-48/man/fitdistr.Rd 2012-05-15 23:12:24.000000000 +0000 +++ r-cran-mass-7.3-49/man/fitdistr.Rd 2018-02-21 19:15:08.000000000 +0000 @@ -25,7 +25,7 @@ at its first argument. Distributions \code{"beta"}, \code{"cauchy"}, \code{"chi-squared"}, - \code{"exponential"}, \code{"f"}, \code{"gamma"}, \code{"geometric"}, + \code{"exponential"}, \code{"gamma"}, \code{"geometric"}, \code{"log-normal"}, \code{"lognormal"}, \code{"logistic"}, \code{"negative binomial"}, \code{"normal"}, \code{"Poisson"}, \code{"t"} and \code{"weibull"} are recognised, case being ignored. diff -Nru r-cran-mass-7.3-48/MD5 r-cran-mass-7.3-49/MD5 --- r-cran-mass-7.3-48/MD5 2017-12-24 21:44:17.000000000 +0000 +++ r-cran-mass-7.3-49/MD5 2018-02-23 08:09:50.000000000 +0000 @@ -1,4 +1,4 @@ -d9cfcb43e225cc127df2814b853a634f *DESCRIPTION +33716af37003e48dc8248f8f2a17c9f0 *DESCRIPTION 35aff05a505ecf7e81e0473767794ca9 *INDEX 69dc33cbb77b951a255d313b9a318b0a *LICENCE.note 0ac7b30ad35a4c19ea69d76a6a366b02 *NAMESPACE @@ -217,7 +217,7 @@ df9ff3b3ed9842a6c2d767dfb14233d8 *man/eqscplot.Rd d6c9433b3ee2a9fe920dcedecbefdf06 *man/farms.Rd 7d46e561298348eafcb2464adcfa66b2 *man/fgl.Rd -fe390cf0437098a11251b103a0788822 *man/fitdistr.Rd +c9354f03af7c5806071ad7554b0e5306 *man/fitdistr.Rd 84a1341dab0450af647d63e235728383 *man/forbes.Rd 6f7df5c4aadc280d302a025110571c4b *man/fractions.Rd e2971220e00d364f968079d07203da26 *man/galaxies.Rd @@ -326,7 +326,7 @@ 55c6f4de353b9479359459d2718a017e *tests/fitdistr.Rout.save afd4f607cba7fda8ec4d22bffd88fc50 *tests/glm.nb.R 7fea2161b12d01c8940107342815dd0e *tests/hubers.R -8d87026da3c153e0fa65eb33c150d072 *tests/lme.R +80c50d5c299f0d0a4dbbb457a235faba *tests/lme.R edee76adc2d27e4ba90f1ff79360148b *tests/polr.R f4e6b3ffb6521ea7625515e2f0ae7f98 *tests/profile.R a23ddf89e02a02ed030e4ed5538d3430 *tests/regression.R diff -Nru r-cran-mass-7.3-48/tests/lme.R r-cran-mass-7.3-49/tests/lme.R --- r-cran-mass-7.3-48/tests/lme.R 2012-05-15 23:12:19.000000000 +0000 +++ r-cran-mass-7.3-49/tests/lme.R 2017-12-31 20:12:16.000000000 +0000 @@ -1,16 +1,17 @@ ## stepAIC on an lme object: an example from Robert Cuffe -library(nlme) -library(MASS) -set.seed(321) # to be sure -a <- data.frame( resp=rnorm(250), cov1=rnorm(250), - cov2=rnorm(250), group=rep(letters[1:10],25) ) -mod1 <- lme(resp~cov1, a, ~cov1|group, method="ML") -mod2 <- stepAIC(mod1, scope=list(upper=~(cov1+cov2)^2, lower=~1) ) +if(require(nlme)) { + library(MASS) + set.seed(321) # to be sure + a <- data.frame( resp=rnorm(250), cov1=rnorm(250), + cov2=rnorm(250), group=rep(letters[1:10],25) ) + mod1 <- lme(resp~cov1, a, ~cov1|group, method="ML") + mod2 <- stepAIC(mod1, scope=list(upper=~(cov1+cov2)^2, lower=~1) ) -beav <- beav2 -set.seed(123) -beav$dummy <- rnorm(nrow(beav)) -beav.gls <- gls(temp ~ activ + dummy, data = beav, - corr = corAR1(0.8), method = "ML") -stepAIC(beav.gls) + beav <- beav2 + set.seed(123) + beav$dummy <- rnorm(nrow(beav)) + beav.gls <- gls(temp ~ activ + dummy, data = beav, + corr = corAR1(0.8), method = "ML") + stepAIC(beav.gls) +}