Binary files /tmp/tmpCmIosQ/TDz1SIo_8t/r-cran-rcppgsl-0.3.5/build/partial.rdb and /tmp/tmpCmIosQ/8DFip76UdJ/r-cran-rcppgsl-0.3.6/build/partial.rdb differ diff -Nru r-cran-rcppgsl-0.3.5/ChangeLog r-cran-rcppgsl-0.3.6/ChangeLog --- r-cran-rcppgsl-0.3.5/ChangeLog 2018-05-19 18:26:41.000000000 +0000 +++ r-cran-rcppgsl-0.3.6/ChangeLog 2018-06-10 13:19:45.000000000 +0000 @@ -1,3 +1,12 @@ +2018-06-10 Dirk Eddelbuettel + + * DESCRIPTION (Version, Date): Release 0.3.6 + + * vignettes/header.tex: Split off vignette as pandoc 2.* no longer + allows embedding this in the header [CRAN request] + * vignettes/bib.tex: Idem, also updated entries + * vignettes/RcppGSL-intro.Rmd: Use bib.tex and header.tex + 2018-05-19 Dirk Eddelbuettel * DESCRIPTION (Version, Date): Release 0.3.5 diff -Nru r-cran-rcppgsl-0.3.5/debian/changelog r-cran-rcppgsl-0.3.6/debian/changelog --- r-cran-rcppgsl-0.3.5/debian/changelog 2018-06-01 15:00:34.000000000 +0000 +++ r-cran-rcppgsl-0.3.6/debian/changelog 2018-06-15 03:31:31.000000000 +0000 @@ -1,8 +1,12 @@ -r-cran-rcppgsl (0.3.5-1build1) cosmic; urgency=medium +r-cran-rcppgsl (0.3.6-1) unstable; urgency=medium - * No-change rebuild against r-api-3.5 + * New upstream release + + * debian/control: Set Build-Depends: to current R version + * debian/control: Set Build-Depends: to 'debhelper (>= 10)' + * debian/control: Set Standards-Version: to current version - -- Graham Inggs Fri, 01 Jun 2018 15:00:34 +0000 + -- Dirk Eddelbuettel Thu, 14 Jun 2018 22:31:31 -0500 r-cran-rcppgsl (0.3.5-1) unstable; urgency=medium diff -Nru r-cran-rcppgsl-0.3.5/debian/control r-cran-rcppgsl-0.3.6/debian/control --- r-cran-rcppgsl-0.3.5/debian/control 2018-05-10 14:22:32.000000000 +0000 +++ r-cran-rcppgsl-0.3.6/debian/control 2018-06-15 03:31:14.000000000 +0000 @@ -2,7 +2,7 @@ Section: gnu-r Priority: optional Maintainer: Dirk Eddelbuettel -Build-Depends: debhelper (>= 7.0.0), r-base-dev (>= 3.4.4), dh-r, r-cran-rcpp (>= 0.11.0), libgsl-dev +Build-Depends: debhelper (>= 10), r-base-dev (>= 3.5.0), dh-r, r-cran-rcpp (>= 0.11.0), libgsl-dev Standards-Version: 4.1.4 Vcs-Browser: https://salsa.debian.org/edd/r-cran-rcppgsl Vcs-Git: https://salsa.debian.org/edd/r-cran-rcppgsl.git diff -Nru r-cran-rcppgsl-0.3.5/DESCRIPTION r-cran-rcppgsl-0.3.6/DESCRIPTION --- r-cran-rcppgsl-0.3.5/DESCRIPTION 2018-05-19 19:37:53.000000000 +0000 +++ r-cran-rcppgsl-0.3.6/DESCRIPTION 2018-06-10 16:43:08.000000000 +0000 @@ -1,8 +1,8 @@ Package: RcppGSL Type: Package Title: 'Rcpp' Integration for 'GNU GSL' Vectors and Matrices -Version: 0.3.5 -Date: 2018-05-19 +Version: 0.3.6 +Date: 2018-06-10 Author: Dirk Eddelbuettel and Romain Francois Maintainer: Dirk Eddelbuettel Description: 'Rcpp' integration for 'GNU GSL' vectors and matrices @@ -24,6 +24,6 @@ SystemRequirements: GNU GSL VignetteBuilder: knitr NeedsCompilation: yes -Packaged: 2018-05-19 19:05:25.818887 UTC; edd +Packaged: 2018-06-10 15:52:16.031231 UTC; edd Repository: CRAN -Date/Publication: 2018-05-19 19:37:53 UTC +Date/Publication: 2018-06-10 16:43:08 UTC Binary files /tmp/tmpCmIosQ/TDz1SIo_8t/r-cran-rcppgsl-0.3.5/inst/doc/RcppGSL-intro.pdf and /tmp/tmpCmIosQ/8DFip76UdJ/r-cran-rcppgsl-0.3.6/inst/doc/RcppGSL-intro.pdf differ diff -Nru r-cran-rcppgsl-0.3.5/inst/doc/RcppGSL-intro.Rmd r-cran-rcppgsl-0.3.6/inst/doc/RcppGSL-intro.Rmd --- r-cran-rcppgsl-0.3.5/inst/doc/RcppGSL-intro.Rmd 2018-05-06 13:18:27.000000000 +0000 +++ r-cran-rcppgsl-0.3.6/inst/doc/RcppGSL-intro.Rmd 2018-06-10 13:17:06.000000000 +0000 @@ -37,7 +37,7 @@ The \pkg{RcppGSL} package provides an easy-to-use interface between \pkg{GSL} and \proglang{R}, with a particular focus on matrix and vector data structures. \pkg{RcppGSL} relies on \pkg{Rcpp} - \citep{JSS:Rcpp,Eddelbuettel:2013:Rcpp,CRAN:Rcpp} which is + \citep{JSS:Rcpp,Eddelbuettel:2013:Rcpp,CRAN:Rcpp,TAS:Rcpp} which is itself a package that eases the interfaces between \proglang{R} and C++.} # Font size of the document, values of 9pt (default), 10pt, 11pt and 12pt @@ -60,117 +60,11 @@ footer_contents: "RcppGSL Vignette" # Produce a pinp document -output: pinp::pinp - -# Extra definitions in header -header-includes: > - \newcommand{\proglang}[1]{\textsf{#1}} - \newcommand{\pkg}[1]{\textbf{#1}} - -# Include bibliography material directly (from .bbl file) -include-after: | - \begin{thebibliography}{12} - \newcommand{\enquote}[1]{``#1''} - \providecommand{\natexlab}[1]{#1} - \providecommand{\url}[1]{\texttt{#1}} - \providecommand{\urlprefix}{URL } - \expandafter\ifx\csname urlstyle\endcsname\relax - \providecommand{\doi}[1]{doi:\discretionary{}{}{}#1}\else - \providecommand{\doi}{doi:\discretionary{}{}{}\begingroup - \urlstyle{rm}\Url}\fi - \providecommand{\eprint}[2][]{\url{#2}} - - \bibitem[{Allaire \emph{et~al.}(2017)Allaire, Eddelbuettel, and - Fran\c{c}ois}]{CRAN:Rcpp:Attributes} - Allaire JJ, Eddelbuettel D, Fran\c{c}ois R (2017). - \newblock \emph{{Rcpp} Attributes}. - \newblock Vignette included in R package Rcpp, - \urlprefix\url{http://CRAN.R-Project.org/package=Rcpp}. - - \bibitem[{Bates and Eddelbuettel(2013)}]{JSS:RcppEigen} - Bates D, Eddelbuettel D (2013). - \newblock \enquote{Fast and Elegant Numerical Linear Algebra Using the - {RcppEigen} Package.} - \newblock \emph{Journal of Statistical Software}, \textbf{52}(5), 1--24. - \newblock \urlprefix\url{http://www.jstatsoft.org/v52/i05/}. - - \bibitem[{Bates \emph{et~al.}(2016)Bates, Fran\c{c}ois, and - Eddelbuettel}]{CRAN:RcppEigen} - Bates D, Fran\c{c}ois R, Eddelbuettel D (2016). - \newblock \emph{RcppEigen: Rcpp integration for the Eigen templated linear - algebra library}. - \newblock {R} package version 0.3.2.9.0, - \urlprefix\url{http://CRAN.R-Project.org/package=RcppEigen}. - - \bibitem[{Eddelbuettel(2013)}]{Eddelbuettel:2013:Rcpp} - Eddelbuettel D (2013). - \newblock \emph{Seamless R and C++ Integration with Rcpp}. - \newblock Use R! Springer, New York. - \newblock ISBN 978-1-4614-6867-7. - - \bibitem[{Eddelbuettel and Fran\c{c}ois(2011)}]{JSS:Rcpp} - Eddelbuettel D, Fran\c{c}ois R (2011). - \newblock \enquote{{Rcpp}: Seamless {R} and {C++} Integration.} - \newblock \emph{Journal of Statistical Software}, \textbf{40}(8), 1--18. - \newblock \urlprefix\url{http://www.jstatsoft.org/v40/i08/}. - - \bibitem[{Eddelbuettel \emph{et~al.}(2017)Eddelbuettel, Fran\c{c}ois, Allaire, - Ushey, Kou, Russel, Chambers, and Bates}]{CRAN:Rcpp} - Eddelbuettel D, Fran\c{c}ois R, Allaire J, Ushey K, Kou Q, Russel N, Chambers - J, Bates D (2017). - \newblock \emph{{Rcpp}: Seamless {R} and {C++} Integration}. - \newblock R package version 0.12.12, - \urlprefix\url{http://CRAN.R-Project.org/package=Rcpp}. - - \bibitem[{Eddelbuettel \emph{et~al.}(2016)Eddelbuettel, Fran\c{c}ois, and - Bates}]{CRAN:RcppArmadillo} - Eddelbuettel D, Fran\c{c}ois R, Bates D (2016). - \newblock \emph{RcppArmadillo: Rcpp integration for Armadillo templated linear - algebra library}. - \newblock R package version 0.7.400.2.0, - \urlprefix\url{http://CRAN.R-Project.org/package=RcppArmadillo}. - - \bibitem[{Eddelbuettel and - Sanderson(2014)}]{Eddelbuettel+Sanderson:2013:RcppArmadillo} - Eddelbuettel D, Sanderson C (2014). - \newblock \enquote{{RcppArmadillo}: Accelerating {R} with High-Performance - {C++} Linear Algebra.} - \newblock \emph{Computational Statistics and Data Analysis}, \textbf{71}, - 1054--1063. - \newblock \doi{10.1016/j.csda.2013.02.005}. - \newblock \urlprefix\url{http://dx.doi.org/10.1016/j.csda.2013.02.005}. - - \bibitem[{Galassi \emph{et~al.}(2010)Galassi, Davies, Theiler, Gough, Jungman, - Alken, Booth, and Rossi}]{GSL} - Galassi M, Davies J, Theiler J, Gough B, Jungman G, Alken P, Booth M, Rossi F - (2010). - \newblock \emph{{GNU} {S}cientific {L}ibrary {R}eference {M}anual}, 3rd - edition. - \newblock Version 1.14. {ISBN} 0954612078, - \urlprefix\url{http://www.gnu.org/software/gsl}. - - \bibitem[{{R Core Team}(2017)}]{R:Main} - {R Core Team} (2017). - \newblock \emph{R: A Language and Environment for Statistical Computing}. - \newblock R Foundation for Statistical Computing, Vienna, Austria. - \newblock \urlprefix\url{https://www.R-project.org/}. - - \bibitem[{Sanderson(2010)}]{Sanderson:2010:Armadillo} - Sanderson C (2010). - \newblock \enquote{{Armadillo}: {An} open source {C++} Algebra Library for Fast - Prototyping and Computationally Intensive Experiments.} - \newblock \emph{Technical report}, {NICTA}. - \newblock \urlprefix\url{http://arma.sf.net}. - - \bibitem[{Sklyar \emph{et~al.}(2015)Sklyar, Murdoch, Smith, Eddelbuettel, and - Fran\c{c}ois}]{CRAN:inline} - Sklyar O, Murdoch D, Smith M, Eddelbuettel D, Fran\c{c}ois R (2015). - \newblock \emph{inline: Inline C, C++, Fortran function calls from R}. - \newblock R package version 0.3.14, - \urlprefix\url{http://CRAN.R-Project.org/package=inline}. - - \end{thebibliography} - +output: + pinp::pinp: + includes: + in_header: header.tex + after_body: bib.tex # Required: Vignette metadata for inclusion in a package. vignette: > @@ -288,7 +182,7 @@ \end{table} At the same time, the \pkg{Rcpp} package -\citep{JSS:Rcpp,Eddelbuettel:2013:Rcpp,CRAN:Rcpp} offers a +\citep{JSS:Rcpp,Eddelbuettel:2013:Rcpp,CRAN:Rcpp,TAS:Rcpp} offers a higher-level interface between \proglang{R} and \proglang{C++}. \pkg{Rcpp} permits \proglang{R} objects like vectors, matrices, lists, functions, environments, $\ldots$, to be Binary files /tmp/tmpCmIosQ/TDz1SIo_8t/r-cran-rcppgsl-0.3.5/inst/doc/RcppGSL-unitTests.pdf and /tmp/tmpCmIosQ/8DFip76UdJ/r-cran-rcppgsl-0.3.6/inst/doc/RcppGSL-unitTests.pdf differ diff -Nru r-cran-rcppgsl-0.3.5/inst/NEWS.Rd r-cran-rcppgsl-0.3.6/inst/NEWS.Rd --- r-cran-rcppgsl-0.3.5/inst/NEWS.Rd 2018-05-19 18:27:42.000000000 +0000 +++ r-cran-rcppgsl-0.3.6/inst/NEWS.Rd 2018-06-10 15:50:51.000000000 +0000 @@ -3,6 +3,12 @@ \newcommand{\ghpr}{\href{https://github.com/eddelbuettel/rcppgsl/pull/#1}{##1}} \newcommand{\ghit}{\href{https://github.com/eddelbuettel/rcppgsl/issues/#1}{##1}} +\section{Changes in version 0.3.6 (2018-06-10)}{ + \itemize{ + \item The vignette was updated to accomodate pandoc 2* [CRAN request]. + } +} + \section{Changes in version 0.3.5 (2018-05-19)}{ \itemize{ \item Update package manual page using references to diff -Nru r-cran-rcppgsl-0.3.5/MD5 r-cran-rcppgsl-0.3.6/MD5 --- r-cran-rcppgsl-0.3.5/MD5 2018-05-19 19:37:54.000000000 +0000 +++ r-cran-rcppgsl-0.3.6/MD5 2018-06-10 16:43:09.000000000 +0000 @@ -1,5 +1,5 @@ -216588dc25956447427ea00a7f5aa4cb *ChangeLog -2d526c73332b3f43fd5dcb20da4cb27c *DESCRIPTION +a24c036f03588ea18bd1933f6c0e7595 *ChangeLog +ac05ae6512fd0ea0f37798ae04f76922 *DESCRIPTION ab224aaaef366cc78e9ed7430feeea9f *NAMESPACE 4ae937de8397e60712c56229703c16f5 *R/RcppExports.R f7d8b7cbd39e593ba8ddf03a43279dc9 *R/fastLm.R @@ -7,18 +7,18 @@ e3e6b6943ffd2cc94aca47745e502d33 *R/inline.R c5b9b7ab289082d2db470406ae4ec06c *README.md 3883e612bd76f4fe2df73a4bcaf28164 *TODO -9eca307757c2f9dc9dbf0428f7d4ad61 *build/partial.rdb +63b8a8d92ba585c1df02e07e8fdbc79a *build/partial.rdb 7e81d08d11f12884529f506fb16eb4d7 *build/vignette.rds f18d78c02f7b4646acd3897c83bda9b9 *cleanup 6d8f0f03f3eafe94a80f750e5c9b3622 *configure 7697313f7223ee0547730856221945b2 *configure.ac -f71446225f4713bfa28535d7200ca5db *inst/NEWS.Rd +adc37deb9cb9699b2efe929196a76197 *inst/NEWS.Rd 95fc42dfaa4077d66daaf8c817e56903 *inst/doc/RcppGSL-intro.R -581fd084da3f6ae7ab78793257ad6bf4 *inst/doc/RcppGSL-intro.Rmd -7626c62fd5feaff97a63e3bda23b0844 *inst/doc/RcppGSL-intro.pdf +2ec94201bb009801e121fd8230bc97fa *inst/doc/RcppGSL-intro.Rmd +c272cc85a0e757541222fc9be4f3da07 *inst/doc/RcppGSL-intro.pdf 0f98c4d25edede758e9506ca23f53b82 *inst/doc/RcppGSL-unitTests.R 6dda354a3fdcc41d415aab82a49daec6 *inst/doc/RcppGSL-unitTests.Rnw -e47971dd362facac11c818a952b2c939 *inst/doc/RcppGSL-unitTests.pdf +2ebc6d45d6fe83243771e54b6c1f770d *inst/doc/RcppGSL-unitTests.pdf acd73645dbdb9731139253720713e1f7 *inst/examples/RcppGSLExample/DESCRIPTION ca4d3febd8107be64527dbb80674d7f0 *inst/examples/RcppGSLExample/NAMESPACE 2ad3558b32896f6b90dfca1b628b04ea *inst/examples/RcppGSLExample/R/RcppExports.R @@ -59,5 +59,7 @@ 9cfa37e70e40833dd2607a100c7d2e33 *src/setErrorHandler.cpp 52b9db5ab9b67fe30d328212540182f2 *tests/doRUnit.R 396d412e57df138f52ee4c2f21cbbb03 *tools/winlibs.R -581fd084da3f6ae7ab78793257ad6bf4 *vignettes/RcppGSL-intro.Rmd +2ec94201bb009801e121fd8230bc97fa *vignettes/RcppGSL-intro.Rmd 6dda354a3fdcc41d415aab82a49daec6 *vignettes/RcppGSL-unitTests.Rnw +c84b831f23f752807efbe480ba816a42 *vignettes/bib.tex +c09be7f352259d09bb9b3e6ae40d737d *vignettes/header.tex diff -Nru r-cran-rcppgsl-0.3.5/vignettes/bib.tex r-cran-rcppgsl-0.3.6/vignettes/bib.tex --- r-cran-rcppgsl-0.3.5/vignettes/bib.tex 1970-01-01 00:00:00.000000000 +0000 +++ r-cran-rcppgsl-0.3.6/vignettes/bib.tex 2018-06-10 13:16:11.000000000 +0000 @@ -0,0 +1,107 @@ +\begin{thebibliography}{12} +\newcommand{\enquote}[1]{``#1''} +\providecommand{\natexlab}[1]{#1} +\providecommand{\url}[1]{\texttt{#1}} +\providecommand{\urlprefix}{URL } +\expandafter\ifx\csname urlstyle\endcsname\relax + \providecommand{\doi}[1]{doi:\discretionary{}{}{}#1}\else + \providecommand{\doi}{doi:\discretionary{}{}{}\begingroup + \urlstyle{rm}\Url}\fi +\providecommand{\eprint}[2][]{\url{#2}} + +\bibitem[{Allaire \emph{et~al.}(2018)Allaire, Eddelbuettel, and + Fran\c{c}ois}]{CRAN:Rcpp:Attributes} +Allaire JJ, Eddelbuettel D, Fran\c{c}ois R (2018). +\newblock \emph{{Rcpp} Attributes}. +\newblock Vignette included in R package Rcpp, + \urlprefix\url{http://CRAN.R-Project.org/package=Rcpp}. + +\bibitem[{Bates and Eddelbuettel(2013)}]{JSS:RcppEigen} +Bates D, Eddelbuettel D (2013). +\newblock \enquote{Fast and Elegant Numerical Linear Algebra Using the + {RcppEigen} Package.} +\newblock \emph{Journal of Statistical Software}, \textbf{52}(5), 1--24. +\newblock \urlprefix\url{http://www.jstatsoft.org/v52/i05/}. + +\bibitem[{Bates \emph{et~al.}(2016)Bates, Fran\c{c}ois, and + Eddelbuettel}]{CRAN:RcppEigen} +Bates D, Fran\c{c}ois R, Eddelbuettel D (2016). +\newblock \emph{RcppEigen: Rcpp integration for the Eigen templated linear + algebra library}. +\newblock {R} package version 0.3.2.9.0, + \urlprefix\url{http://CRAN.R-Project.org/package=RcppEigen}. + +\bibitem[{Eddelbuettel(2013)}]{Eddelbuettel:2013:Rcpp} +Eddelbuettel D (2013). +\newblock \emph{Seamless R and C++ Integration with Rcpp}. +\newblock Use R! Springer, New York. +\newblock ISBN 978-1-4614-6867-7. + +\bibitem[{Eddelbuettel and Balamuta(2018)}]{TAS:Rcpp} +Eddelbuettel D, Balamuta JJ (2018). +\newblock \enquote{Extending R with C++: A Brief Introduction to Rcpp.} +\newblock \emph{The American Statistician}, \textbf{72:1}. +\newblock \url{10.1080/00031305.2017.1375990}. + +\bibitem[{Eddelbuettel and Fran\c{c}ois(2011)}]{JSS:Rcpp} +Eddelbuettel D, Fran\c{c}ois R (2011). +\newblock \enquote{{Rcpp}: Seamless {R} and {C++} Integration.} +\newblock \emph{Journal of Statistical Software}, \textbf{40}(8), 1--18. +\newblock \urlprefix\url{http://www.jstatsoft.org/v40/i08/}. + +\bibitem[{Eddelbuettel \emph{et~al.}(2018)Eddelbuettel, Fran\c{c}ois, Allaire, + Ushey, Kou, Russel, Chambers, and Bates}]{CRAN:Rcpp} +Eddelbuettel D, Fran\c{c}ois R, Allaire J, Ushey K, Kou Q, Russel N, Chambers + J, Bates D (2018). +\newblock \emph{{Rcpp}: Seamless {R} and {C++} Integration}. +\newblock R package version 0.12.12, + \urlprefix\url{http://CRAN.R-Project.org/package=Rcpp}. + +\bibitem[{Eddelbuettel \emph{et~al.}(2016)Eddelbuettel, Fran\c{c}ois, and + Bates}]{CRAN:RcppArmadillo} +Eddelbuettel D, Fran\c{c}ois R, Bates D (2016). +\newblock \emph{RcppArmadillo: Rcpp integration for Armadillo templated linear + algebra library}. +\newblock R package version 0.7.400.2.0, + \urlprefix\url{http://CRAN.R-Project.org/package=RcppArmadillo}. + +\bibitem[{Eddelbuettel and + Sanderson(2014)}]{Eddelbuettel+Sanderson:2013:RcppArmadillo} +Eddelbuettel D, Sanderson C (2014). +\newblock \enquote{{RcppArmadillo}: Accelerating {R} with High-Performance + {C++} Linear Algebra.} +\newblock \emph{Computational Statistics and Data Analysis}, \textbf{71}, + 1054--1063. +\newblock \doi{10.1016/j.csda.2013.02.005}. +\newblock \urlprefix\url{http://dx.doi.org/10.1016/j.csda.2013.02.005}. + +\bibitem[{Galassi \emph{et~al.}(2010)Galassi, Davies, Theiler, Gough, Jungman, + Alken, Booth, and Rossi}]{GSL} +Galassi M, Davies J, Theiler J, Gough B, Jungman G, Alken P, Booth M, Rossi F + (2010). +\newblock \emph{{GNU} {S}cientific {L}ibrary {R}eference {M}anual}, 3rd + edition. +\newblock Version 1.14. {ISBN} 0954612078, + \urlprefix\url{http://www.gnu.org/software/gsl}. + +\bibitem[{{R Core Team}(2018)}]{R:Main} +{R Core Team} (2018). +\newblock \emph{R: A Language and Environment for Statistical Computing}. +\newblock R Foundation for Statistical Computing, Vienna, Austria. +\newblock \urlprefix\url{https://www.R-project.org/}. + +\bibitem[{Sanderson(2010)}]{Sanderson:2010:Armadillo} +Sanderson C (2010). +\newblock \enquote{{Armadillo}: {An} open source {C++} Algebra Library for Fast + Prototyping and Computationally Intensive Experiments.} +\newblock \emph{Technical report}, {NICTA}. +\newblock \urlprefix\url{http://arma.sf.net}. + +\bibitem[{Sklyar \emph{et~al.}(2015)Sklyar, Murdoch, Smith, Eddelbuettel, and + Fran\c{c}ois}]{CRAN:inline} +Sklyar O, Murdoch D, Smith M, Eddelbuettel D, Fran\c{c}ois R (2015). +\newblock \emph{inline: Inline C, C++, Fortran function calls from R}. +\newblock R package version 0.3.14, + \urlprefix\url{http://CRAN.R-Project.org/package=inline}. + +\end{thebibliography} diff -Nru r-cran-rcppgsl-0.3.5/vignettes/header.tex r-cran-rcppgsl-0.3.6/vignettes/header.tex --- r-cran-rcppgsl-0.3.5/vignettes/header.tex 1970-01-01 00:00:00.000000000 +0000 +++ r-cran-rcppgsl-0.3.6/vignettes/header.tex 2018-06-10 13:11:59.000000000 +0000 @@ -0,0 +1,2 @@ +\newcommand{\proglang}[1]{\textsf{#1}} +\newcommand{\pkg}[1]{\textbf{#1}} diff -Nru r-cran-rcppgsl-0.3.5/vignettes/RcppGSL-intro.Rmd r-cran-rcppgsl-0.3.6/vignettes/RcppGSL-intro.Rmd --- r-cran-rcppgsl-0.3.5/vignettes/RcppGSL-intro.Rmd 2018-05-06 13:18:27.000000000 +0000 +++ r-cran-rcppgsl-0.3.6/vignettes/RcppGSL-intro.Rmd 2018-06-10 13:17:06.000000000 +0000 @@ -37,7 +37,7 @@ The \pkg{RcppGSL} package provides an easy-to-use interface between \pkg{GSL} and \proglang{R}, with a particular focus on matrix and vector data structures. \pkg{RcppGSL} relies on \pkg{Rcpp} - \citep{JSS:Rcpp,Eddelbuettel:2013:Rcpp,CRAN:Rcpp} which is + \citep{JSS:Rcpp,Eddelbuettel:2013:Rcpp,CRAN:Rcpp,TAS:Rcpp} which is itself a package that eases the interfaces between \proglang{R} and C++.} # Font size of the document, values of 9pt (default), 10pt, 11pt and 12pt @@ -60,117 +60,11 @@ footer_contents: "RcppGSL Vignette" # Produce a pinp document -output: pinp::pinp - -# Extra definitions in header -header-includes: > - \newcommand{\proglang}[1]{\textsf{#1}} - \newcommand{\pkg}[1]{\textbf{#1}} - -# Include bibliography material directly (from .bbl file) -include-after: | - \begin{thebibliography}{12} - \newcommand{\enquote}[1]{``#1''} - \providecommand{\natexlab}[1]{#1} - \providecommand{\url}[1]{\texttt{#1}} - \providecommand{\urlprefix}{URL } - \expandafter\ifx\csname urlstyle\endcsname\relax - \providecommand{\doi}[1]{doi:\discretionary{}{}{}#1}\else - \providecommand{\doi}{doi:\discretionary{}{}{}\begingroup - \urlstyle{rm}\Url}\fi - \providecommand{\eprint}[2][]{\url{#2}} - - \bibitem[{Allaire \emph{et~al.}(2017)Allaire, Eddelbuettel, and - Fran\c{c}ois}]{CRAN:Rcpp:Attributes} - Allaire JJ, Eddelbuettel D, Fran\c{c}ois R (2017). - \newblock \emph{{Rcpp} Attributes}. - \newblock Vignette included in R package Rcpp, - \urlprefix\url{http://CRAN.R-Project.org/package=Rcpp}. - - \bibitem[{Bates and Eddelbuettel(2013)}]{JSS:RcppEigen} - Bates D, Eddelbuettel D (2013). - \newblock \enquote{Fast and Elegant Numerical Linear Algebra Using the - {RcppEigen} Package.} - \newblock \emph{Journal of Statistical Software}, \textbf{52}(5), 1--24. - \newblock \urlprefix\url{http://www.jstatsoft.org/v52/i05/}. - - \bibitem[{Bates \emph{et~al.}(2016)Bates, Fran\c{c}ois, and - Eddelbuettel}]{CRAN:RcppEigen} - Bates D, Fran\c{c}ois R, Eddelbuettel D (2016). - \newblock \emph{RcppEigen: Rcpp integration for the Eigen templated linear - algebra library}. - \newblock {R} package version 0.3.2.9.0, - \urlprefix\url{http://CRAN.R-Project.org/package=RcppEigen}. - - \bibitem[{Eddelbuettel(2013)}]{Eddelbuettel:2013:Rcpp} - Eddelbuettel D (2013). - \newblock \emph{Seamless R and C++ Integration with Rcpp}. - \newblock Use R! Springer, New York. - \newblock ISBN 978-1-4614-6867-7. - - \bibitem[{Eddelbuettel and Fran\c{c}ois(2011)}]{JSS:Rcpp} - Eddelbuettel D, Fran\c{c}ois R (2011). - \newblock \enquote{{Rcpp}: Seamless {R} and {C++} Integration.} - \newblock \emph{Journal of Statistical Software}, \textbf{40}(8), 1--18. - \newblock \urlprefix\url{http://www.jstatsoft.org/v40/i08/}. - - \bibitem[{Eddelbuettel \emph{et~al.}(2017)Eddelbuettel, Fran\c{c}ois, Allaire, - Ushey, Kou, Russel, Chambers, and Bates}]{CRAN:Rcpp} - Eddelbuettel D, Fran\c{c}ois R, Allaire J, Ushey K, Kou Q, Russel N, Chambers - J, Bates D (2017). - \newblock \emph{{Rcpp}: Seamless {R} and {C++} Integration}. - \newblock R package version 0.12.12, - \urlprefix\url{http://CRAN.R-Project.org/package=Rcpp}. - - \bibitem[{Eddelbuettel \emph{et~al.}(2016)Eddelbuettel, Fran\c{c}ois, and - Bates}]{CRAN:RcppArmadillo} - Eddelbuettel D, Fran\c{c}ois R, Bates D (2016). - \newblock \emph{RcppArmadillo: Rcpp integration for Armadillo templated linear - algebra library}. - \newblock R package version 0.7.400.2.0, - \urlprefix\url{http://CRAN.R-Project.org/package=RcppArmadillo}. - - \bibitem[{Eddelbuettel and - Sanderson(2014)}]{Eddelbuettel+Sanderson:2013:RcppArmadillo} - Eddelbuettel D, Sanderson C (2014). - \newblock \enquote{{RcppArmadillo}: Accelerating {R} with High-Performance - {C++} Linear Algebra.} - \newblock \emph{Computational Statistics and Data Analysis}, \textbf{71}, - 1054--1063. - \newblock \doi{10.1016/j.csda.2013.02.005}. - \newblock \urlprefix\url{http://dx.doi.org/10.1016/j.csda.2013.02.005}. - - \bibitem[{Galassi \emph{et~al.}(2010)Galassi, Davies, Theiler, Gough, Jungman, - Alken, Booth, and Rossi}]{GSL} - Galassi M, Davies J, Theiler J, Gough B, Jungman G, Alken P, Booth M, Rossi F - (2010). - \newblock \emph{{GNU} {S}cientific {L}ibrary {R}eference {M}anual}, 3rd - edition. - \newblock Version 1.14. {ISBN} 0954612078, - \urlprefix\url{http://www.gnu.org/software/gsl}. - - \bibitem[{{R Core Team}(2017)}]{R:Main} - {R Core Team} (2017). - \newblock \emph{R: A Language and Environment for Statistical Computing}. - \newblock R Foundation for Statistical Computing, Vienna, Austria. - \newblock \urlprefix\url{https://www.R-project.org/}. - - \bibitem[{Sanderson(2010)}]{Sanderson:2010:Armadillo} - Sanderson C (2010). - \newblock \enquote{{Armadillo}: {An} open source {C++} Algebra Library for Fast - Prototyping and Computationally Intensive Experiments.} - \newblock \emph{Technical report}, {NICTA}. - \newblock \urlprefix\url{http://arma.sf.net}. - - \bibitem[{Sklyar \emph{et~al.}(2015)Sklyar, Murdoch, Smith, Eddelbuettel, and - Fran\c{c}ois}]{CRAN:inline} - Sklyar O, Murdoch D, Smith M, Eddelbuettel D, Fran\c{c}ois R (2015). - \newblock \emph{inline: Inline C, C++, Fortran function calls from R}. - \newblock R package version 0.3.14, - \urlprefix\url{http://CRAN.R-Project.org/package=inline}. - - \end{thebibliography} - +output: + pinp::pinp: + includes: + in_header: header.tex + after_body: bib.tex # Required: Vignette metadata for inclusion in a package. vignette: > @@ -288,7 +182,7 @@ \end{table} At the same time, the \pkg{Rcpp} package -\citep{JSS:Rcpp,Eddelbuettel:2013:Rcpp,CRAN:Rcpp} offers a +\citep{JSS:Rcpp,Eddelbuettel:2013:Rcpp,CRAN:Rcpp,TAS:Rcpp} offers a higher-level interface between \proglang{R} and \proglang{C++}. \pkg{Rcpp} permits \proglang{R} objects like vectors, matrices, lists, functions, environments, $\ldots$, to be