diff -Nru spread-phy-1.0.7+dfsg/debian/changelog spread-phy-1.0.7+dfsg/debian/changelog --- spread-phy-1.0.7+dfsg/debian/changelog 2015-08-16 08:28:59.000000000 +0000 +++ spread-phy-1.0.7+dfsg/debian/changelog 2018-04-06 21:31:27.000000000 +0000 @@ -1,3 +1,15 @@ +spread-phy (1.0.7+dfsg-2) unstable; urgency=medium + + * cme fix dpkg-control + * d/watch: + - version=4 + - xz compression + * Standards-Version: 4.1.4 + * Point Vcs fields to salsa.debian.org + * debhelper 11 + + -- Andreas Tille Fri, 06 Apr 2018 23:31:27 +0200 + spread-phy (1.0.7+dfsg-1) unstable; urgency=medium * New upstream version (but skip the test suite requiring fest) diff -Nru spread-phy-1.0.7+dfsg/debian/compat spread-phy-1.0.7+dfsg/debian/compat --- spread-phy-1.0.7+dfsg/debian/compat 2015-08-16 08:28:59.000000000 +0000 +++ spread-phy-1.0.7+dfsg/debian/compat 2018-04-06 21:31:27.000000000 +0000 @@ -1 +1 @@ -9 +11 diff -Nru spread-phy-1.0.7+dfsg/debian/control spread-phy-1.0.7+dfsg/debian/control --- spread-phy-1.0.7+dfsg/debian/control 2015-08-16 08:28:59.000000000 +0000 +++ spread-phy-1.0.7+dfsg/debian/control 2018-04-06 21:31:27.000000000 +0000 @@ -3,18 +3,18 @@ Uploaders: Andreas Tille Section: science Priority: optional -Build-Depends: debhelper (>= 9), +Build-Depends: debhelper (>= 11~), javahelper, ant, ant-optional, - default-jdk (>= 1:1.6), + default-jdk, libjebl2-java, libcolt-free-java, libprocessing-core-java, libfest-assert-java -Standards-Version: 3.9.6 -Vcs-Git: git://anonscm.debian.org/debian-med/spread-phy.git -Vcs-Browser: http://anonscm.debian.org/cgit/spread-phy.git +Standards-Version: 4.1.4 +Vcs-Browser: https://salsa.debian.org/med-team/spread-phy +Vcs-Git: https://salsa.debian.org/med-team/spread-phy.git Homepage: http://www.kuleuven.be/aidslab/phylogeography/SPREAD.html Package: spread-phy @@ -22,7 +22,7 @@ Depends: ${shlibs:Depends}, ${misc:Depends}, ${java:Depends}, - default-jre (>= 1:1.6) + default-jre Conflicts: phy-spread Provides: phy-spread Replaces: phy-spread diff -Nru spread-phy-1.0.7+dfsg/debian/copyright spread-phy-1.0.7+dfsg/debian/copyright --- spread-phy-1.0.7+dfsg/debian/copyright 2015-08-16 08:28:59.000000000 +0000 +++ spread-phy-1.0.7+dfsg/debian/copyright 2018-04-06 21:31:27.000000000 +0000 @@ -1,4 +1,4 @@ -Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: Spread Upstream-Contact: Filip Bielejec Source: https://github.com/phylogeography/SPREAD/downloads diff -Nru spread-phy-1.0.7+dfsg/debian/rules spread-phy-1.0.7+dfsg/debian/rules --- spread-phy-1.0.7+dfsg/debian/rules 2015-08-16 08:28:59.000000000 +0000 +++ spread-phy-1.0.7+dfsg/debian/rules 2018-04-06 21:31:27.000000000 +0000 @@ -16,14 +16,3 @@ # no idea why setting CLASSPATH explicitely this way, however patching # build.xml and .classpath seems not to be sufficient CLASSPATH=$(CLASSPATH) ant jar - -# Remark: The following uscan command requires devscripts > 2.12.4 which is not -# yet released at the time of this package release. The code can be obtained -# via -# git clone git://tille@git.debian.org/git/users/tille/devscripts.git -# and then use scripts/uscan.pl -get-orig-source: - mkdir -p ../tarballs - uscan --verbose --force-download --repack-compression xz --destdir ../tarballs - # use this in case you are not trusting uscan from git - # . debian/get-orig-source diff -Nru spread-phy-1.0.7+dfsg/debian/upstream/metadata spread-phy-1.0.7+dfsg/debian/upstream/metadata --- spread-phy-1.0.7+dfsg/debian/upstream/metadata 2015-08-16 08:28:59.000000000 +0000 +++ spread-phy-1.0.7+dfsg/debian/upstream/metadata 2018-04-06 21:31:27.000000000 +0000 @@ -2,15 +2,24 @@ Homepage: http://www.kuleuven.be/aidslab/phylogeography/SPREAD.html Name: SPREAD Reference: - author: Filip Bielejec and Andrew Rambaut and Marc A. Suchard and Philippe Lemey - title: > - SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics - journal: Bioinformatics - volume: 27 - number: 20 - pages: 2910-2912 - year: 2011 - PMID: 21911333 - DOI: 10.1093/bioinformatics/btr481 - URL: http://bioinformatics.oxfordjournals.org/content/27/20/2910.full - eprint: http://bioinformatics.oxfordjournals.org/content/early/2011/09/11/bioinformatics.btr481.full.pdf+html + Author: > + Filip Bielejec and Andrew Rambaut and Marc A. Suchard and Philippe Lemey + Title: > + SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics + Journal: Bioinformatics + Volume: 27 + Number: 20 + Pages: 2910-2912 + Year: 2011 + PMID: 21911333 + DOI: 10.1093/bioinformatics/btr481 + URL: http://bioinformatics.oxfordjournals.org/content/27/20/2910.full + ePrint: "http://bioinformatics.oxfordjournals.org/content/early/\ + 2011/09/11/bioinformatics.btr481.full.pdf+html" +Registry: + - Name: OMICtools + Entry: OMICS_08645 + - Name: bio.tools + Entry: NA + - Name: SciCrunch + Entry: NA diff -Nru spread-phy-1.0.7+dfsg/debian/watch spread-phy-1.0.7+dfsg/debian/watch --- spread-phy-1.0.7+dfsg/debian/watch 2015-08-16 08:28:59.000000000 +0000 +++ spread-phy-1.0.7+dfsg/debian/watch 2018-04-06 21:31:27.000000000 +0000 @@ -1,4 +1,4 @@ -version=3 +version=4 -opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g" \ - https://github.com/phylogeography/SPREAD/releases .*/archive/(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz) \ No newline at end of file +opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \ + https://github.com/phylogeography/SPREAD/releases .*/archive/(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)