diff -Nru trnascan-se-2.0.9+ds/debian/changelog trnascan-se-2.0.10+ds/debian/changelog --- trnascan-se-2.0.9+ds/debian/changelog 2021-08-15 13:33:59.000000000 +0000 +++ trnascan-se-2.0.10+ds/debian/changelog 2022-09-26 19:44:54.000000000 +0000 @@ -1,3 +1,12 @@ +trnascan-se (2.0.10+ds-1) unstable; urgency=medium + + * Team upload. + * New upstream version + * Standards-Version: 4.6.1 (routine-update) + * No tab in license text (routine-update) + + -- Andreas Tille Mon, 26 Sep 2022 21:44:54 +0200 + trnascan-se (2.0.9+ds-1) unstable; urgency=medium [ Nilesh Patra ] diff -Nru trnascan-se-2.0.9+ds/debian/control trnascan-se-2.0.10+ds/debian/control --- trnascan-se-2.0.9+ds/debian/control 2021-07-16 17:24:21.000000000 +0000 +++ trnascan-se-2.0.10+ds/debian/control 2022-09-26 19:44:54.000000000 +0000 @@ -7,7 +7,7 @@ Build-Depends: debhelper-compat (= 13), autoconf-archive, infernal -Standards-Version: 4.5.1 +Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/trnascan-se Vcs-Git: https://salsa.debian.org/med-team/trnascan-se.git Homepage: http://lowelab.ucsc.edu/tRNAscan-SE diff -Nru trnascan-se-2.0.9+ds/debian/copyright trnascan-se-2.0.10+ds/debian/copyright --- trnascan-se-2.0.9+ds/debian/copyright 2021-05-11 19:17:32.000000000 +0000 +++ trnascan-se-2.0.10+ds/debian/copyright 2022-09-26 19:44:54.000000000 +0000 @@ -17,10 +17,10 @@ Files: * Copyright: - 1992-1996 Sean R. Eddy - 1992-1996, 2011-2017 Todd M.J. Lowe - 2011-2017 Patricia Chan - 2017 Brian Lin + 1992-1996 Sean R. Eddy + 1992-1996, 2011-2017 Todd M.J. Lowe + 2011-2017 Patricia Chan + 2017 Brian Lin License: GPL-3.0+ Files: src/dbmalloc.h @@ -35,8 +35,8 @@ Files: src/sqio.c Copyright: - 1990 Don Gilbert - 1992-1996 Sean R. Eddy + 1990 Don Gilbert + 1992-1996 Sean R. Eddy License: GPL-2.0+ Files: src/trnascan.c diff -Nru trnascan-se-2.0.9+ds/debian/patches/chmod_only_if_exists.patch trnascan-se-2.0.10+ds/debian/patches/chmod_only_if_exists.patch --- trnascan-se-2.0.9+ds/debian/patches/chmod_only_if_exists.patch 2021-07-16 17:26:52.000000000 +0000 +++ trnascan-se-2.0.10+ds/debian/patches/chmod_only_if_exists.patch 2022-09-26 19:44:54.000000000 +0000 @@ -22,5 +22,5 @@ - chmod +x bin/EukHighConfidenceFilter + if [ -x bin/EukHighConfidenceFilter ] ; then chmod +x bin/EukHighConfidenceFilter ; fi - # copy data libraries - install-data-hook: + bin/MitoHighConfidenceFilter: MitoHighConfidenceFilter.in Makefile + $(do_subst) < $(srcdir)/MitoHighConfidenceFilter.in > bin/MitoHighConfidenceFilter diff -Nru trnascan-se-2.0.9+ds/debian/patches/confdir.patch trnascan-se-2.0.10+ds/debian/patches/confdir.patch --- trnascan-se-2.0.9+ds/debian/patches/confdir.patch 2021-07-16 17:26:52.000000000 +0000 +++ trnascan-se-2.0.10+ds/debian/patches/confdir.patch 2022-09-26 19:44:54.000000000 +0000 @@ -2,9 +2,9 @@ Author: Afif Elghraoui Forwarded: no Last-Update: 2018-02-24 ---- trnascan-se.orig/tRNAscan-SE.src -+++ trnascan-se/tRNAscan-SE.src -@@ -44,7 +44,7 @@ +--- a/tRNAscan-SE.src ++++ b/tRNAscan-SE.src +@@ -44,7 +44,7 @@ our $release_date = "Sept 2022"; our $program_id = "tRNAscan-SE-".$version; # modified by 'make' @@ -13,15 +13,15 @@ # Signal handling $SIG{'TERM'} = 'error_handler'; ---- trnascan-se.orig/Makefile.am -+++ trnascan-se/Makefile.am -@@ -28,11 +28,12 @@ +--- a/Makefile.am ++++ b/Makefile.am +@@ -28,11 +28,12 @@ bin_covels_SE_SOURCES = $(COVESRC) src/s bin_coves_SE_SOURCES = $(COVESRC) src/score_main.c # process scripts -# treat tRNAscan-SE.conf as a script since it's just easier --dist_bin_SCRIPTS = bin/sstofa bin/fasta2gsi bin/EukHighConfidenceFilter tRNAscan-SE tRNAscan-SE.conf -+dist_bin_SCRIPTS = bin/sstofa bin/fasta2gsi bin/EukHighConfidenceFilter tRNAscan-SE +-dist_bin_SCRIPTS = bin/sstofa bin/fasta2gsi bin/EukHighConfidenceFilter bin/MitoHighConfidenceFilter tRNAscan-SE tRNAscan-SE.conf ++dist_bin_SCRIPTS = bin/sstofa bin/fasta2gsi bin/EukHighConfidenceFilter bin/MitoHighConfidenceFilter tRNAscan-SE +# config file +dist_sysconf_DATA = tRNAscan-SE.conf # for a few files, need to substitute perl path, bin directory, and lib directory diff -Nru trnascan-se-2.0.9+ds/debian/patches/pkg-data.patch trnascan-se-2.0.10+ds/debian/patches/pkg-data.patch --- trnascan-se-2.0.9+ds/debian/patches/pkg-data.patch 2021-07-16 17:26:52.000000000 +0000 +++ trnascan-se-2.0.10+ds/debian/patches/pkg-data.patch 2022-09-26 19:44:54.000000000 +0000 @@ -6,9 +6,9 @@ Author: Afif Elghraoui Forwarded: no Last-Update: 2018-02-24 ---- trnascan-se.orig/Makefile.am -+++ trnascan-se/Makefile.am -@@ -23,7 +23,7 @@ +--- a/Makefile.am ++++ b/Makefile.am +@@ -23,7 +23,7 @@ COVESRC = src/align.c src/dbviterbi.c sr bin_PROGRAMS = bin/eufindtRNA bin/trnascan-1.4 bin/covels-SE bin/coves-SE bin_eufindtRNA_SOURCES = $(SQUIDHDRS) $(SQUIDSRC) $(EUFIND) bin_trnascan_1_4_SOURCES = src/trnascan.c @@ -17,8 +17,8 @@ bin_covels_SE_SOURCES = $(COVESRC) src/scan_main.c bin_coves_SE_SOURCES = $(COVESRC) src/score_main.c -@@ -32,7 +32,7 @@ - dist_bin_SCRIPTS = bin/sstofa bin/fasta2gsi bin/EukHighConfidenceFilter tRNAscan-SE tRNAscan-SE.conf +@@ -32,7 +32,7 @@ bin_coves_SE_SOURCES = $(COVESRC) src/sc + dist_bin_SCRIPTS = bin/sstofa bin/fasta2gsi bin/EukHighConfidenceFilter bin/MitoHighConfidenceFilter tRNAscan-SE tRNAscan-SE.conf # for a few files, need to substitute perl path, bin directory, and lib directory # first, define a function for it -do_subst = sed -e 's,\@bindir\@,$(bindir),g' -e 's,\@libdir\@,$(libdir),g' -e 's,[@]PERL[@],$(PERL),g' -e 's,\@INFERNAL\@,$(INFERNAL),g' @@ -26,9 +26,9 @@ # extra steps for cleaning/distribution CLEANFILES = $(dist_bin_SCRIPTS) $(srcdir)/lib/* -@@ -61,16 +61,8 @@ - $(do_subst) < $(srcdir)/EukHighConfidenceFilter.in > bin/EukHighConfidenceFilter - chmod +x bin/EukHighConfidenceFilter +@@ -65,16 +65,8 @@ bin/MitoHighConfidenceFilter: MitoHighCo + $(do_subst) < $(srcdir)/MitoHighConfidenceFilter.in > bin/MitoHighConfidenceFilter + chmod +x bin/MitoHighConfidenceFilter -# copy libraries. We don't have "libraries" in the libgmp.so.4 kind, but we do have data libraries, so we don't have to deal with lib_LTLIBRARIES. +# copy data libraries @@ -47,8 +47,8 @@ + test -d $(DESTDIR)/$(pkgdatadir) || mkdir -p $(DESTDIR)/$(pkgdatadir) + chmod u+w $(DESTDIR)/$(pkgdatadir) + cp -rf $(srcdir)/lib/* $(DESTDIR)/$(pkgdatadir) ---- trnascan-se.orig/tRNAscan-SE.src -+++ trnascan-se/tRNAscan-SE.src +--- a/tRNAscan-SE.src ++++ b/tRNAscan-SE.src @@ -18,7 +18,7 @@ # @@ -58,8 +58,8 @@ use Getopt::Long; use tRNAscanSE::Configuration; use tRNAscanSE::tRNA; ---- trnascan-se.orig/EukHighConfidenceFilter.in -+++ trnascan-se/EukHighConfidenceFilter.in +--- a/EukHighConfidenceFilter.in ++++ b/EukHighConfidenceFilter.in @@ -13,7 +13,7 @@ # -------------------------------------------------------------------- @@ -69,8 +69,8 @@ use Getopt::Long; use tRNAscanSE::tRNA; ---- trnascan-se.orig/tRNAscan-SE.conf.src -+++ trnascan-se/tRNAscan-SE.conf.src +--- a/tRNAscan-SE.conf.src ++++ b/tRNAscan-SE.conf.src @@ -3,7 +3,7 @@ # default paths diff -Nru trnascan-se-2.0.9+ds/EukHighConfidenceFilter.in trnascan-se-2.0.10+ds/EukHighConfidenceFilter.in --- trnascan-se-2.0.9+ds/EukHighConfidenceFilter.in 2018-05-14 22:37:38.000000000 +0000 +++ trnascan-se-2.0.10+ds/EukHighConfidenceFilter.in 2022-09-11 07:16:37.000000000 +0000 @@ -160,7 +160,7 @@ if ($opt_help || $opt_result eq "" || $opt_ss eq "" || $opt_output eq "" || $opt_prefix eq "" || $opt_cmscore1 < -1 || $opt_ssscore1 < -1 || $opt_isoscore1 < -1 || $opt_isoscore2 < -1 || $opt_isomaxscore2 < -1) { - die "Usage: EukQualityFilter [options]\n", + die "Usage: EukHighConfidenceFilter [options]\n", "Options\n", "--result -i tRNAscan-SE output file used as input\n", "--ss -s tRNAscan-SE secondary structure file used as input\n", diff -Nru trnascan-se-2.0.9+ds/lib/models/TRNAinf-mito-vert trnascan-se-2.0.10+ds/lib/models/TRNAinf-mito-vert --- trnascan-se-2.0.9+ds/lib/models/TRNAinf-mito-vert 2017-02-27 04:58:17.000000000 +0000 +++ trnascan-se-2.0.10+ds/lib/models/TRNAinf-mito-vert 2022-09-09 01:59:19.000000000 +0000 @@ -2762,19 +2762,19 @@ 1.38629 1.38629 1.38629 1.38629 0.00722 4.93426 * 1.46634 0.26236 0.00000 * // -INFERNAL1/a [1.1.1 | July 2014] +INFERNAL1/a [1.1.4 | Dec 2020] NAME Cys STATES 289 NODES 76 CLEN 90 -W 101 +W 95 ALPH RNA RF yes CONS yes MAP yes -DATE Fri Jun 26 17:13:50 2015 -COM [1] cmbuild --hand --enone Cys-final-vert.cm ../Cys-2nd-align.sto -COM [2] cmcalibrate --seed 208 Cys-final-vert.cm +DATE Mon Sep 5 01:53:38 2022 +COM [1] cmbuild --hand --enone ../CMs/vertebrate/TRNAinf-mito-vert-Cys-with-darm.cm ../alignments/vertebrate/mito-vert-Cys-with-darm.sto +COM [2] cmcalibrate --seed 208 ../CMs/vertebrate/TRNAinf-mito-vert-Cys-with-darm.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 @@ -2783,298 +2783,298 @@ N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 -NSEQ 1085 -EFFN 1085.000000 -CKSUM 4203025139 +NSEQ 1066 +EFFN 1066.000000 +CKSUM 4151050929 NULL 0.000 0.000 0.000 0.000 -EFP7GF -13.5523 0.71872 -ECMLC 0.63230 -7.45037 1.82190 1600000 422055 0.002843 -ECMGC 0.33509 -38.57774 -23.65245 1600000 59441 0.006729 -ECMLI 0.62678 -6.99791 2.27396 1600000 400898 0.002993 -ECMGI 0.35524 -34.86801 -20.94503 1600000 56241 0.007112 +EFP7GF -13.6381 0.71857 +ECMLC 0.63264 -7.96099 1.40511 1600000 449280 0.002671 +ECMGC 0.30150 -45.30517 -29.51296 1600000 46761 0.008554 +ECMLI 0.62763 -7.60085 1.75795 1600000 426743 0.002812 +ECMGI 0.31970 -41.67649 -26.91015 1600000 44903 0.008908 CM [ ROOT 0 ] - - - - - - - S 0 -1 0 1 4 0 1 101 137 -15.012 -16.257 -0.000 -12.711 - IL 1 1 2 1 4 9 31 102 139 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 - IR 2 2 3 2 3 11 32 103 139 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + S 0 -1 0 1 4 0 1 95 118 -14.986 -16.232 -0.000 -12.685 + IL 1 1 2 1 4 17 38 96 119 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 + IR 2 2 3 2 3 17 39 97 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 105 - U - + - MR 3 2 3 5 5 16 39 101 138 -15.061 -0.000 -14.876 -15.088 -15.980 -12.730 -5.008 -13.900 1.989 - D 4 2 3 5 5 7 28 100 136 -5.352 -0.707 -2.978 -4.409 -2.404 - IR 5 5 3 5 5 9 31 101 138 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + MR 3 2 3 5 5 24 46 95 118 -15.035 -0.000 -14.851 -15.063 -15.954 -12.633 -4.718 -13.776 1.986 + D 4 2 3 5 5 14 34 94 116 -5.352 -0.707 -2.978 -4.409 -2.404 + IR 5 5 3 5 5 17 37 95 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 104 A U = = - MP 6 5 3 10 6 17 38 100 137 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.037 -10.697 -12.232 3.426 -14.373 -15.527 -9.831 -12.275 -11.792 1.398 -12.462 1.384 -9.756 -13.537 -11.662 -10.830 - ML 7 5 3 10 6 8 30 98 135 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 8 5 3 10 6 8 30 98 135 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 9 5 3 10 6 5 25 95 131 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 - IL 10 10 5 10 6 9 30 100 136 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 - IR 11 11 6 11 5 9 31 99 136 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + MP 6 5 3 10 6 24 45 94 117 -15.969 -15.909 -0.000 -14.685 -14.965 -15.360 -12.011 -10.671 -12.207 3.537 -14.348 -15.503 -9.806 -12.249 -11.767 1.102 -12.436 1.166 -9.730 -13.512 -11.636 -10.805 + ML 7 5 3 10 6 16 36 93 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 8 5 3 10 6 16 35 92 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 9 5 3 10 6 13 32 90 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 10 10 5 10 6 16 37 94 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 11 11 6 11 5 16 37 93 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 103 G C = = - MP 12 11 6 16 6 17 37 98 135 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -11.597 -9.715 -11.597 0.313 -12.624 -4.466 -1.536 -12.229 -11.226 3.767 -4.912 -0.712 -7.881 -10.963 -3.340 -10.565 - ML 13 11 6 16 6 8 30 96 133 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 14 11 6 16 6 8 30 96 133 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 15 11 6 16 6 5 25 93 129 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 - IL 16 16 5 16 6 9 30 98 134 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 - IR 17 17 6 17 5 9 30 97 134 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + MP 12 11 6 16 6 24 43 92 115 -15.969 -15.909 -0.000 -14.685 -14.965 -15.360 -13.835 -10.519 -15.877 0.433 -15.455 -3.492 -9.790 -15.495 -11.888 3.764 -4.218 -0.354 -10.149 -12.149 -2.880 -14.900 + ML 13 11 6 16 6 15 35 91 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 14 11 6 16 6 15 35 90 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 15 11 6 16 6 12 31 88 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 16 16 5 16 6 16 36 92 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 17 17 6 17 5 16 37 91 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 102 C G = = - MP 18 17 6 22 6 16 35 96 133 -15.995 -15.934 -0.002 -14.710 -9.921 -15.385 -12.996 -13.250 -12.336 -9.458 -10.697 -12.494 3.589 -4.327 -4.604 -3.662 -5.043 -11.588 0.589 -12.843 1.158 -5.388 - ML 19 17 6 22 6 8 29 94 131 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 20 17 6 22 6 8 29 94 131 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 21 17 6 22 6 5 25 91 127 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 - IL 22 22 5 22 6 9 30 96 132 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 - IR 23 23 6 23 5 9 30 95 132 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + MP 18 17 6 22 6 22 42 90 113 -15.969 -15.909 -0.002 -14.685 -9.616 -15.360 -12.953 -13.196 -12.300 -9.396 -10.666 -12.464 3.575 -4.011 -4.160 -3.374 -4.729 -11.513 0.559 -12.804 1.216 -5.086 + ML 19 17 6 22 6 15 35 89 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 20 17 6 22 6 15 35 89 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 21 17 6 22 6 12 31 86 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 22 22 5 22 6 16 36 90 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 23 23 6 23 5 16 36 89 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 101 C G = = - MP 24 23 6 28 6 14 33 94 131 -15.993 -15.932 -0.000 -14.709 -14.989 -15.384 -13.044 -13.325 -4.313 -3.325 -4.588 -12.506 3.491 -11.628 -12.466 -9.533 -12.586 -11.728 0.351 -12.878 1.717 -11.267 - ML 25 23 6 28 6 8 28 92 129 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 26 23 6 28 6 8 29 93 129 -8.231 -6.960 -0.485 -6.939 -2.073 -5.152 -0.824 -1.907 1.465 -1.293 - D 27 23 6 28 6 5 24 89 126 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 - IL 28 28 5 28 6 8 30 94 130 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 - IR 29 29 6 29 5 8 30 93 130 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + MP 24 23 6 28 6 21 40 88 111 -15.967 -15.907 -0.000 -14.683 -14.963 -15.358 -13.018 -13.299 -4.019 -3.038 -4.148 -12.480 3.448 -11.602 -12.439 -9.505 -12.560 -11.701 0.544 -12.852 1.759 -11.241 + ML 25 23 6 28 6 15 34 87 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 26 23 6 28 6 16 36 87 109 -8.404 -7.133 -0.421 -7.112 -2.245 -5.325 -1.056 -2.186 1.567 -1.570 + D 27 23 6 28 6 12 31 84 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 28 28 5 28 6 16 36 88 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 29 29 6 29 5 16 36 87 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 100 C G = = - MP 30 29 6 34 6 12 31 92 129 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -11.241 -11.021 -2.174 -4.098 -6.107 -11.752 3.441 -10.561 -11.018 -6.669 -5.033 -1.543 0.646 -3.671 1.214 -1.007 - ML 31 29 6 34 6 7 28 91 127 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 32 29 6 34 6 7 27 90 127 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 33 29 6 34 6 5 24 88 124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 - IL 34 34 5 34 6 8 29 92 128 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 - IR 35 35 6 35 5 8 29 91 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + MP 30 29 6 34 6 19 38 86 109 -15.969 -15.909 -0.000 -14.685 -14.965 -15.360 -12.919 -13.145 -2.143 -3.870 -5.820 -12.454 3.526 -11.559 -12.371 -9.267 -3.955 -11.424 0.231 -3.343 1.324 -1.615 + ML 31 29 6 34 6 15 34 85 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 32 29 6 34 6 14 34 85 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 33 29 6 34 6 12 31 82 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 34 34 5 34 6 15 35 86 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 35 35 6 35 5 16 35 85 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 99 u g = = - MP 36 35 6 40 6 10 29 90 127 -6.387 -15.934 -0.018 -14.710 -14.990 -15.385 -10.302 -10.005 -10.301 -0.985 -4.016 -6.329 2.184 -9.821 -10.160 -0.318 -3.860 -7.574 1.044 -2.503 2.871 -1.176 - ML 37 35 6 40 6 7 27 89 125 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 38 35 6 40 6 7 26 89 125 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 39 35 6 40 6 5 24 86 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 - IL 40 40 5 40 6 9 28 89 126 -6.473 -6.736 -0.040 -8.392 -9.168 -8.828 0.000 0.000 0.000 0.000 - IR 41 41 6 41 5 8 27 89 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + MP 36 35 6 40 6 17 36 84 107 -10.402 -15.909 -0.001 -14.685 -14.965 -15.360 -10.355 -10.061 -10.346 -2.405 -5.433 -5.970 2.261 -9.860 -10.208 -1.001 -3.014 -7.632 0.850 -2.113 2.962 -0.941 + ML 37 35 6 40 6 14 33 83 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 38 35 6 40 6 14 33 83 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 39 35 6 40 6 12 30 81 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 40 40 5 40 6 15 34 83 106 -3.448 -3.711 -0.366 -5.366 -6.142 -5.803 0.000 0.000 0.000 0.000 + IR 41 41 6 41 5 15 34 83 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 98 G C = = - MP 42 41 6 46 4 8 27 88 125 -15.218 -15.425 -0.000 -13.839 -13.606 -10.564 -14.991 0.090 -15.399 -11.843 -9.852 -14.782 -11.908 3.885 -12.141 -2.664 -10.169 -12.265 -12.232 -13.757 - ML 43 41 6 46 4 6 25 88 124 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 - MR 44 41 6 46 4 6 25 87 123 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 - D 45 41 6 46 4 5 23 86 122 -4.568 -4.250 -2.265 -0.520 - IL 46 46 5 46 4 7 26 89 125 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 - IR 47 47 6 47 3 7 26 88 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + MP 42 41 6 46 4 15 34 82 105 -15.192 -15.399 -0.000 -13.813 -13.631 -10.537 -15.117 -0.405 -15.400 -11.795 -9.827 -14.878 -11.885 3.909 -12.111 -2.220 -10.152 -12.225 -12.219 -13.906 + ML 43 41 6 46 4 13 32 83 105 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 44 41 6 46 4 13 31 82 104 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 45 41 6 46 4 11 30 81 103 -4.568 -4.250 -2.265 -0.520 + IL 46 46 5 46 4 14 33 84 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 47 47 6 47 3 14 33 83 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - + - - ML 48 47 6 50 3 6 25 86 123 -16.127 -0.000 -14.781 0.582 -3.824 -1.593 1.071 - D 49 47 6 50 3 4 23 85 121 -6.174 -1.687 -0.566 - IL 50 50 3 50 3 6 25 87 123 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + ML 48 47 6 50 3 13 32 80 103 -16.102 -0.000 -14.756 0.232 -3.439 -1.438 1.241 + D 49 47 6 50 3 11 30 79 101 -6.174 -1.687 -0.566 + IL 50 50 3 50 3 13 32 82 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - + - - ML 51 50 3 53 2 5 24 85 122 -5.756 -0.027 0.429 -5.173 1.345 -3.548 - D 52 50 3 53 2 4 23 84 121 -8.445 -0.004 - IL 53 53 3 53 2 5 24 85 122 -6.312 -0.018 0.000 0.000 0.000 0.000 + ML 51 50 3 53 2 12 31 79 102 -8.891 -0.003 0.253 -11.396 1.489 -11.069 + D 52 50 3 53 2 11 30 78 101 -8.445 -0.004 + IL 53 53 3 53 2 12 31 79 102 -3.584 -0.126 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - - B 54 53 3 55 164 4 23 84 121 + B 54 53 3 55 164 11 30 78 101 [ BEGL 12 ] - - - - - - - S 55 54 1 56 1 0 3 40 59 0.000 + S 55 54 1 56 1 0 11 40 59 0.000 [ BIF 13 ] - - - - - - - B 56 55 1 57 107 0 3 40 59 + B 56 55 1 57 107 0 11 40 59 [ BEGL 14 ] - - - - - - - S 57 56 1 58 4 0 0 22 41 -0.141 -5.276 -5.558 -4.435 + S 57 56 1 58 4 0 1 22 41 -0.000 -14.097 -13.504 -14.144 [ MATP 15 ] 12 28 G U = = - MP 58 57 1 62 6 2 3 22 41 -15.854 -15.793 -0.000 -14.570 -14.850 -15.245 -11.979 -10.544 -12.199 -1.989 -14.295 -14.384 -9.691 -12.237 -11.660 2.846 -12.291 3.097 -9.645 -13.233 -11.561 -10.799 - ML 59 57 1 62 6 1 1 19 38 -11.623 -11.969 -6.683 -6.378 -0.308 -2.557 -6.461 -5.867 -7.358 1.987 - MR 60 57 1 62 6 1 1 19 37 -11.887 -10.616 -6.525 -10.595 -0.166 -3.378 -4.246 -1.359 -4.982 1.818 - D 61 57 1 62 6 0 0 16 34 -15.594 -14.292 -10.089 -10.771 -10.789 -0.003 + MP 58 57 1 62 6 2 3 22 41 -15.969 -15.909 -0.000 -14.685 -14.965 -15.360 -12.076 -10.662 -12.290 -1.491 -14.397 -14.668 -9.807 -12.330 -11.774 2.808 -12.413 3.111 -9.754 -13.383 -11.668 -10.890 + ML 59 57 1 62 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 60 57 1 62 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 61 57 1 62 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 27 U A = = - MP 64 63 6 68 6 2 2 20 39 -15.854 -15.793 -0.004 -14.570 -14.850 -8.733 -12.504 -12.166 -12.387 -11.785 -10.577 -12.242 -11.331 -12.077 -10.473 -11.784 -12.583 -12.086 3.996 -10.569 -5.807 -5.590 - ML 65 63 6 68 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 66 63 6 68 6 1 1 18 36 -12.798 -11.527 -7.436 -11.505 -3.722 -0.124 0.248 -5.955 1.473 -5.594 - D 67 63 6 68 6 0 0 15 33 -15.782 -14.480 -10.277 -10.959 -10.977 -0.003 + MP 64 63 6 68 6 2 2 20 39 -15.969 -15.909 -0.005 -14.685 -14.965 -8.200 -12.514 -12.176 -12.397 -11.792 -10.588 -12.252 -11.325 -12.087 -10.484 -11.792 -12.593 -12.096 3.996 -10.579 -5.817 -5.600 + ML 65 63 6 68 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 66 63 6 68 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 67 63 6 68 6 0 0 19 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 26 G C = = - MP 70 69 6 74 6 2 3 18 37 -15.851 -15.790 -0.002 -14.566 -9.495 -15.241 -13.586 -5.176 -15.243 -0.199 -15.319 -11.644 -9.709 -14.952 -11.769 3.914 -11.985 -5.692 -10.045 -12.086 -12.118 -14.077 - ML 71 69 6 74 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 72 69 6 74 6 1 1 19 38 -9.217 -7.946 -3.855 -7.924 -0.141 -6.138 -2.138 -2.024 -2.898 1.762 - D 73 69 6 74 6 0 0 14 33 -16.588 -15.286 -11.083 -11.765 -11.783 -0.002 + MP 70 69 6 74 6 2 3 18 37 -15.964 -15.904 -0.002 -14.680 -9.304 -15.355 -13.691 -4.985 -15.327 -0.158 -15.428 -11.762 -9.822 -15.042 -11.883 3.911 -12.100 -5.387 -10.158 -12.202 -12.229 -14.154 + ML 71 69 6 74 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 72 69 6 74 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 73 69 6 74 6 0 0 17 36 -11.984 -10.683 -6.480 -7.162 -7.179 -0.038 IL 74 74 5 74 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 - IR 75 75 6 75 5 1 1 19 37 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + IR 75 75 6 75 5 1 1 19 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 25 a u = = - MP 76 75 6 80 4 2 2 16 35 -15.071 -15.278 -0.123 -3.612 -0.174 -2.399 -2.279 2.420 -7.210 -8.069 -2.483 -5.128 -1.961 -1.158 -5.114 -2.895 2.173 -1.325 0.560 0.925 + MP 76 75 6 80 4 2 2 16 35 -15.185 -15.392 -0.100 -3.897 -0.323 -2.198 -2.516 2.390 -7.322 -8.181 -2.703 -5.009 -1.482 -1.747 -4.933 -2.634 2.183 -1.019 0.816 0.789 ML 77 75 6 80 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 - MR 78 75 6 80 4 1 1 18 37 -7.653 -6.682 -4.549 -0.085 0.104 -1.319 -1.662 1.143 - D 79 75 6 80 4 0 0 14 33 -12.010 -11.692 -9.707 -0.003 + MR 78 75 6 80 4 1 1 19 37 -6.572 -5.601 -3.468 -0.187 1.668 -2.157 -1.811 -1.679 + D 79 75 6 80 4 0 0 17 36 -7.420 -7.101 -5.117 -0.062 IL 80 80 5 80 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 - IR 81 81 6 81 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + IR 81 81 6 81 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - + - - ML 82 81 6 84 3 1 1 14 33 -15.857 -0.284 -2.485 1.355 -2.784 -3.200 0.248 - D 83 81 6 84 3 0 0 11 30 -14.997 -10.510 -0.001 - IL 84 84 3 84 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + ML 82 81 6 84 3 1 1 14 33 -15.994 -0.257 -2.615 1.359 -2.482 -2.864 0.161 + D 83 81 6 84 3 0 0 11 30 -13.725 -9.238 -0.002 + IL 84 84 3 84 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - u - + - - ML 85 84 3 87 3 1 1 13 32 -15.574 -1.775 -0.499 -0.091 -1.599 -0.017 0.801 - D 86 84 3 87 3 0 0 11 29 -15.898 -11.411 -0.001 + ML 85 84 3 87 3 1 1 13 32 -15.737 -1.639 -0.559 -0.070 -1.371 -0.018 0.743 + D 86 84 3 87 3 0 0 11 29 -15.359 -10.872 -0.001 IL 87 87 3 87 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - u - + - - ML 88 87 3 90 3 1 1 13 32 -13.799 -2.982 -0.195 0.481 -2.609 -0.629 0.843 - D 89 87 3 90 3 0 0 11 29 -17.226 -12.739 -0.000 - IL 90 90 3 90 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + ML 88 87 3 90 3 1 1 13 32 -14.099 -3.014 -0.191 0.508 -2.647 -0.601 0.815 + D 89 87 3 90 3 0 0 11 29 -17.107 -12.620 -0.000 + IL 90 90 3 90 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - u - + - - ML 91 90 3 93 3 1 1 14 33 -10.820 -3.924 -0.099 0.351 0.349 -3.023 0.409 - D 92 90 3 93 3 0 0 11 29 -17.510 -3.213 -0.165 + ML 91 90 3 93 3 1 1 14 32 -11.087 -4.190 -0.082 0.355 0.353 -3.313 0.426 + D 92 90 3 93 3 0 0 11 29 -17.476 -3.674 -0.118 IL 93 93 3 93 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - A - + - - ML 94 93 3 96 3 1 2 13 31 -12.900 -0.001 -11.554 1.175 -0.364 -0.068 -6.449 - D 95 93 3 96 3 0 0 8 27 -17.384 -8.045 -0.005 + ML 94 93 3 96 3 1 1 13 31 -12.413 -0.001 -11.067 1.347 -1.110 -0.034 -5.920 + D 95 93 3 96 3 0 0 8 27 -17.405 -9.328 -0.002 IL 96 96 3 96 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 - [ MATL 24 ] 21 - u - + - - ML 97 96 3 99 3 1 1 11 30 -12.943 -1.595 -0.580 0.193 -1.305 -0.172 0.646 - D 98 96 3 99 3 0 0 7 26 -17.378 -5.373 -0.035 + [ MATL 24 ] 21 - a - + - + ML 97 96 3 99 3 1 1 12 30 -12.437 -1.390 -0.694 0.782 -1.608 -0.624 0.382 + D 98 96 3 99 3 0 0 7 26 -17.403 -12.916 -0.000 IL 99 99 3 99 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - U - + - - ML 100 99 3 102 3 1 1 6 10 -0.507 -1.757 -10.670 -0.615 -5.242 -6.139 1.725 - D 101 99 3 102 3 0 0 2 7 -17.460 -0.000 -11.852 - IL 102 102 3 102 3 1 1 5 9 -6.253 -0.022 -8.953 0.000 0.000 0.000 0.000 - [ MATL 26 ] 24 - A - + - - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.026 -2.335 -1.311 0.447 + ML 100 99 3 102 3 1 1 7 12 -0.944 -1.061 -9.704 0.144 -4.183 -4.894 1.489 + D 101 99 3 102 3 0 0 3 8 -17.477 -0.000 -11.869 + IL 102 102 3 102 3 1 1 6 12 -4.932 -0.056 -7.632 0.000 0.000 0.000 0.000 + [ MATL 26 ] 24 - a - + - + ML 103 102 3 105 2 1 1 1 1 * 0.000 0.864 -2.468 -1.256 0.660 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - - S 107 56 1 108 3 0 0 26 45 -16.127 -0.000 -14.781 + S 107 56 1 108 3 0 0 26 45 -16.102 -0.000 -14.756 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - G - + - - ML 109 108 2 111 5 1 1 26 45 -5.010 -0.046 -14.876 -15.088 -15.980 0.540 -4.811 1.220 -2.470 - D 110 108 2 111 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 - IL 111 111 3 111 5 1 1 26 45 -6.917 -0.019 -8.595 -10.428 -9.701 0.000 0.000 0.000 0.000 + ML 109 108 2 111 5 1 1 26 45 -15.035 -0.000 -14.851 -15.063 -15.954 0.776 -5.680 1.098 -2.967 + D 110 108 2 111 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 + IL 111 111 3 111 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 31 48 U A = = - MP 112 111 3 116 6 2 2 25 44 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -3.796 -6.088 -2.877 -2.218 -5.248 -10.602 0.691 -6.262 -1.526 -5.506 -10.219 -1.684 3.446 -1.942 0.359 -0.355 + MP 112 111 3 116 6 2 2 25 44 -15.969 -15.909 -0.000 -14.685 -14.965 -15.360 -3.162 -5.712 -2.539 -1.862 -4.867 -10.041 0.731 -5.817 -2.062 -5.371 -9.721 -1.332 3.429 -2.243 0.213 -0.138 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 - IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + IR 117 117 6 117 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 32 47 u a = = - MP 118 117 6 122 6 2 2 23 42 -15.995 -6.415 -0.017 -14.710 -14.990 -15.385 -10.292 -9.994 -10.293 0.577 -5.339 -11.137 2.598 -7.004 -10.151 -1.425 -10.664 -2.856 2.750 -5.469 -0.182 -1.861 - ML 119 117 6 122 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 120 117 6 122 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + MP 118 117 6 122 6 2 2 23 42 -15.969 -10.135 -0.001 -14.685 -14.965 -15.360 -10.263 -9.966 -10.264 0.777 -5.019 -11.108 2.347 -6.701 -10.122 -1.057 -10.636 -2.516 2.804 -5.152 0.229 -1.670 + ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 - IR 123 123 6 123 5 1 1 22 41 -5.618 -0.046 -9.130 -7.297 -8.403 0.000 0.000 0.000 0.000 - [ MATP 32 ] 33 45 g c = = - MP 124 123 6 128 6 2 2 21 40 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -9.965 -3.980 -9.783 2.902 -4.952 -5.010 -2.728 -10.473 -10.221 2.968 -10.467 -3.121 -2.002 -9.637 -7.988 -4.366 + IR 123 123 6 123 5 1 1 23 41 -3.091 -0.289 -6.602 -4.770 -5.876 0.000 0.000 0.000 0.000 + [ MATP 32 ] 33 45 G C = = + MP 124 123 6 128 6 2 2 21 40 -15.969 -15.909 -0.000 -14.685 -14.965 -15.360 -9.939 -5.110 -9.757 2.850 -4.619 -4.661 -2.447 -10.448 -10.196 3.019 -10.442 -2.764 -2.509 -9.612 -7.962 -3.999 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 - [ MATP 33 ] 34 44 a u = = - MP 130 129 6 134 6 2 2 19 38 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.115 -3.925 -12.334 2.996 -14.433 -14.561 -9.832 -12.373 -11.801 2.950 -12.433 -2.160 -9.784 -13.381 -11.699 -10.934 + [ MATP 33 ] 34 44 A U = = + MP 130 129 6 134 6 2 2 19 38 -15.969 -15.909 -0.000 -14.685 -14.965 -15.360 -12.081 -3.565 -12.297 3.005 -14.401 -14.614 -9.806 -12.337 -11.775 2.927 -12.411 -1.835 -9.755 -13.371 -11.669 -10.897 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 43 A U = = - MP 136 135 6 140 4 2 2 17 35 -15.218 -15.425 -0.000 -13.839 -12.035 -0.055 -3.881 3.627 -14.367 -15.507 -9.823 -3.461 -11.791 1.005 -12.460 -1.163 -9.749 -4.972 -11.654 -4.889 + MP 136 135 6 140 4 2 2 17 35 -15.192 -15.399 -0.000 -13.813 -12.009 0.073 -3.586 3.596 -14.341 -15.479 -9.796 -3.696 -11.765 1.345 -12.434 -3.822 -9.723 -4.672 -11.628 -4.588 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - U - + - - ML 142 141 6 144 3 1 1 14 33 -16.127 -0.000 -14.781 -3.614 -1.544 -2.560 1.768 + ML 142 141 6 144 3 1 1 14 33 -16.102 -0.000 -14.756 -3.166 -2.443 -4.306 1.870 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - + - - ML 145 144 3 147 3 1 1 13 31 -16.127 -0.000 -14.781 -5.245 -11.437 -13.226 1.990 + ML 145 144 3 147 3 1 1 13 31 -16.102 -0.000 -14.756 -4.949 -11.351 -13.076 1.988 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - G - * - - ML 148 147 3 150 3 1 1 12 30 -16.127 -0.000 -14.781 -10.685 -4.359 1.982 -11.396 + ML 148 147 3 150 3 1 1 12 30 -16.102 -0.000 -14.756 -10.662 -4.070 1.978 -11.370 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - C - * - - ML 151 150 3 153 3 1 1 10 29 -16.127 -0.000 -14.781 -10.457 1.982 -4.348 -9.927 + ML 151 150 3 153 3 1 1 11 29 -16.102 -0.000 -14.756 -10.425 1.978 -4.061 -9.897 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - A - * - - ML 154 153 3 156 3 1 1 9 28 -16.127 -0.000 -14.781 2.000 -12.065 -11.312 -11.398 + ML 154 153 3 156 3 1 1 9 28 -16.102 -0.000 -14.756 2.000 -12.040 -11.286 -11.373 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - A - + - - ML 157 156 3 159 3 1 1 7 26 -16.127 -0.000 -14.781 1.984 -6.229 -5.892 -6.149 + ML 157 156 3 159 3 1 1 7 26 -16.102 -0.000 -14.756 1.980 -5.935 -5.552 -5.859 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - A - + - - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.771 -5.980 -0.852 -5.954 + ML 160 159 3 162 2 1 1 1 1 * 0.000 1.791 -5.661 -1.003 -5.668 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - - S 164 54 1 165 3 0 3 55 91 -16.127 -0.000 -14.781 - IL 165 165 2 165 3 1 4 57 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + S 164 54 1 165 3 0 4 48 71 -16.102 -0.000 -14.756 + IL 165 165 2 165 3 1 6 51 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 49 - A - + - - ML 166 165 2 168 3 1 3 55 91 -16.127 -0.000 -14.781 1.708 -2.361 -2.379 -1.531 - D 167 165 2 168 3 0 1 53 89 -6.174 -1.687 -0.566 - IL 168 168 3 168 3 1 3 56 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + ML 166 165 2 168 3 1 4 48 71 -16.102 -0.000 -14.756 1.756 -3.253 -2.435 -1.588 + D 167 165 2 168 3 0 3 47 69 -6.174 -1.687 -0.566 + IL 168 168 3 168 3 1 5 50 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 50 - G - + - - ML 169 168 3 171 2 1 2 54 90 -16.782 -0.000 -1.167 -2.250 1.704 -3.552 - D 170 168 3 171 2 0 1 53 89 -8.445 -0.004 - IL 171 171 3 171 2 1 2 54 91 -1.823 -0.479 0.000 0.000 0.000 0.000 + ML 169 168 3 171 2 1 3 47 70 -16.757 -0.000 -1.050 -12.283 1.814 -11.336 + D 170 168 3 171 2 0 2 46 69 -8.445 -0.004 + IL 171 171 3 171 2 1 4 48 71 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - - B 172 171 3 173 229 0 1 53 89 + B 172 171 3 173 229 0 2 46 69 [ BEGL 47 ] - - - - - - - S 173 172 1 174 4 0 0 27 46 -7.818 -14.122 -13.529 -0.007 + S 173 172 1 174 4 0 0 27 46 -7.793 -14.097 -13.504 -0.007 [ MATP 48 ] 51 68 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 177 173 1 178 6 0 0 21 40 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 + D 177 173 1 178 6 0 0 21 40 -19.983 -18.682 -14.479 -15.161 -15.178 -0.000 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 52 67 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 183 179 6 184 6 0 0 19 38 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 + D 183 179 6 184 6 0 0 19 38 -19.983 -18.682 -14.479 -15.161 -15.178 -0.000 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 53 66 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 189 185 6 190 6 0 0 17 36 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 + D 189 185 6 190 6 0 0 17 36 -19.983 -18.682 -14.479 -15.161 -15.178 -0.000 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 54 65 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 195 191 6 196 6 0 0 15 34 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 + D 195 191 6 196 6 0 0 15 34 -19.983 -18.682 -14.479 -15.161 -15.178 -0.000 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 55 64 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 201 197 6 202 6 0 0 13 32 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 + D 201 197 6 202 6 0 0 13 32 -19.983 -18.682 -14.479 -15.161 -15.178 -0.000 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 56 63 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 207 203 6 208 6 0 0 12 31 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 + D 207 203 6 208 6 0 0 12 31 -19.983 -18.682 -14.479 -15.161 -15.178 -0.000 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 57 62 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 - D 213 209 6 214 4 0 0 11 30 -15.431 -15.112 -13.128 -0.000 + D 213 209 6 214 4 0 0 11 31 -15.405 -15.086 -13.102 -0.000 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 - D 217 215 6 218 3 0 0 8 27 -17.544 -13.057 -0.000 + D 217 215 6 218 3 0 0 8 27 -17.518 -13.031 -0.000 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 59 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 - D 220 218 3 221 3 0 0 7 25 -17.544 -13.057 -0.000 + D 220 218 3 221 3 0 0 7 25 -17.518 -13.031 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 60 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 - D 223 221 3 224 3 0 0 5 24 -17.544 -13.057 -0.000 + D 223 221 3 224 3 0 0 5 24 -17.518 -13.031 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 61 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 @@ -3083,375 +3083,928 @@ [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - - S 229 172 1 230 3 0 1 45 82 -16.127 -0.000 -14.781 - IL 230 230 2 230 3 1 1 47 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + S 229 172 1 230 3 0 2 33 58 -16.102 -0.000 -14.756 + IL 230 230 2 230 3 1 1 36 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 69 - A - + - - ML 231 230 2 233 3 1 2 45 82 -5.703 -0.028 -14.781 1.531 -3.960 -0.572 -1.426 - D 232 230 2 233 3 0 0 43 80 -6.174 -1.687 -0.566 - IL 233 233 3 233 3 1 1 45 82 -5.225 -0.045 -7.925 0.000 0.000 0.000 0.000 + ML 231 230 2 233 3 1 3 33 58 -10.336 -0.001 -14.756 1.580 -4.607 -0.656 -1.582 + D 232 230 2 233 3 0 0 32 56 -6.174 -1.687 -0.566 + IL 233 233 3 233 3 1 1 34 58 -2.023 -0.482 -4.724 0.000 0.000 0.000 0.000 [ MATL 62 ] 71 - A - + - - ML 234 233 3 236 5 1 1 44 81 -15.061 -0.000 -14.876 -15.088 -15.980 1.024 -0.403 -2.543 0.054 - D 235 233 3 236 5 0 0 43 79 -4.959 -0.803 -4.221 -2.596 -2.508 - IL 236 236 3 236 5 1 1 44 81 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 + ML 234 233 3 236 5 1 3 32 57 -15.035 -0.000 -14.851 -15.063 -15.954 1.011 -0.626 -2.171 0.157 + D 235 233 3 236 5 0 0 31 55 -4.959 -0.803 -4.221 -2.596 -2.508 + IL 236 236 3 236 5 1 1 32 57 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 72 97 G C = = - MP 237 236 3 241 6 2 2 43 80 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.628 -4.049 -15.055 -0.232 -15.410 -11.833 -9.852 -14.834 -2.879 3.885 -12.139 -2.483 -10.173 -12.258 -12.237 -13.831 - ML 238 236 3 241 6 1 1 42 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 239 236 3 241 6 1 1 42 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 240 236 3 241 6 0 0 39 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 - IL 241 241 5 241 6 1 1 43 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 - IR 242 242 6 242 5 1 1 42 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + MP 237 236 3 241 6 2 3 31 56 -15.969 -15.909 -0.000 -14.685 -14.965 -15.360 -13.530 -5.438 -14.820 0.150 -15.346 -11.842 -9.826 -14.638 -2.572 3.854 -12.121 -2.089 -10.135 -12.255 -12.194 -13.566 + ML 238 236 3 241 6 1 1 30 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 239 236 3 241 6 1 1 30 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 240 236 3 241 6 0 0 28 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 241 241 5 241 6 1 1 31 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 242 242 6 242 5 1 1 31 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 73 96 C G = = - MP 243 242 6 247 6 2 2 41 78 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -10.293 -4.656 -10.294 -1.265 -4.457 -11.138 3.314 -9.812 -10.152 0.401 -10.665 -3.698 1.190 -6.288 0.822 -3.523 - ML 244 242 6 247 6 1 1 40 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 245 242 6 247 6 1 1 41 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 246 242 6 247 6 0 0 37 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 - IL 247 247 5 247 6 1 1 41 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 - IR 248 248 6 248 5 1 1 41 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + MP 243 242 6 247 6 2 3 29 54 -15.969 -15.909 -0.000 -14.685 -14.965 -15.360 -10.268 -4.202 -10.268 -1.062 -4.060 -11.112 3.370 -9.787 -10.126 -0.368 -10.640 -3.376 0.894 -5.845 1.141 -3.133 + ML 244 242 6 247 6 1 1 28 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 245 242 6 247 6 1 1 30 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 246 242 6 247 6 0 0 27 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 247 247 5 247 6 1 1 29 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 248 248 6 248 5 1 1 29 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 74 95 A U = = - MP 249 248 6 253 6 2 2 39 76 -6.403 -15.934 -0.041 -9.153 -14.990 -6.092 -9.974 -1.834 -4.972 3.503 -10.922 -6.283 0.075 -3.819 -4.557 1.258 -10.477 -0.806 -2.347 -9.650 -7.997 -8.758 - ML 250 248 6 253 6 1 1 39 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 251 248 6 253 6 1 1 40 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 252 248 6 253 6 0 0 35 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 - IL 253 253 5 253 6 1 1 38 75 -6.458 -6.721 -0.041 -8.376 -9.153 -8.813 0.000 0.000 0.000 0.000 - IR 254 254 6 254 5 1 1 39 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + MP 249 248 6 253 6 2 2 27 52 -9.893 -15.909 -0.022 -8.730 -14.965 -6.419 -9.982 -1.734 -4.556 3.580 -10.938 -5.936 -0.604 -3.427 -4.092 0.990 -10.484 -0.448 -2.811 -9.665 -8.013 -8.766 + ML 250 248 6 253 6 1 1 27 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 251 248 6 253 6 1 1 29 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 252 248 6 253 6 0 0 25 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 253 253 5 253 6 1 1 27 51 -3.705 -3.968 -0.300 -5.623 -6.400 -6.060 0.000 0.000 0.000 0.000 + IR 254 254 6 254 5 1 1 28 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 76 94 G C = = - MP 255 254 6 259 6 2 2 37 74 -15.971 -15.910 -0.268 -3.108 -6.937 -4.468 -9.947 -4.393 -9.767 0.345 -10.878 -10.363 1.354 -10.450 -10.201 3.460 -10.449 -1.449 -0.901 -9.622 -2.224 -8.730 - ML 256 254 6 259 6 1 1 39 75 -8.140 -8.486 -3.200 -0.210 -8.336 -5.865 1.710 -2.332 -1.968 -1.871 - MR 257 254 6 259 6 1 1 40 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 258 254 6 259 6 0 0 28 65 -13.972 -12.670 -8.467 -9.149 -9.167 -0.009 - IL 259 259 5 259 6 1 1 37 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 - IR 260 260 6 260 5 1 1 37 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + MP 255 254 6 259 6 2 2 25 50 -15.949 -15.888 -0.197 -3.362 -8.236 -5.206 -9.926 -4.035 -9.745 0.413 -10.870 -10.341 1.256 -10.433 -10.181 3.489 -10.428 -1.208 -1.882 -9.600 -1.840 -8.710 + ML 256 254 6 259 6 1 1 26 50 -8.447 -8.793 -3.507 -0.167 -8.643 -6.172 1.793 -2.774 -2.366 -2.357 + MR 257 254 6 259 6 1 1 29 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 258 254 6 259 6 0 0 21 46 -13.632 -12.330 -8.127 -8.810 -8.827 -0.012 + IL 259 259 5 259 6 1 1 27 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 260 260 6 260 5 1 1 27 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 77 93 g c = = - MP 261 260 6 265 4 2 2 34 70 -5.667 -15.132 -0.215 -3.071 -9.430 -0.177 -3.527 2.199 -10.205 0.327 0.567 -0.825 -9.688 2.387 -9.988 -0.838 -1.549 -1.678 -1.056 -2.267 - ML 262 260 6 265 4 1 1 38 74 -2.294 -11.036 -0.332 -9.765 -7.981 1.448 -9.039 0.340 - MR 263 260 6 265 4 1 1 40 76 -8.575 -0.264 -5.471 -2.815 -4.078 -5.587 1.958 -4.812 - D 264 260 6 265 4 0 0 26 62 -11.371 -11.052 -1.395 -0.692 - IL 265 265 5 265 4 1 1 40 76 -7.463 -0.021 -6.895 -10.632 0.000 0.000 0.000 0.000 - IR 266 266 6 266 3 1 1 39 75 -0.732 -1.411 -5.499 0.000 0.000 0.000 0.000 + MP 261 260 6 265 4 2 2 22 47 -10.070 -15.181 -0.143 -3.417 -9.709 0.195 -3.996 2.349 -10.647 0.675 -0.093 -1.229 -9.966 2.405 -10.215 -1.118 -2.022 -5.991 -0.758 -3.005 + ML 262 260 6 265 4 1 1 25 50 -5.791 -10.775 -0.029 -9.504 -7.648 1.696 -8.431 -0.410 + MR 263 260 6 265 4 1 1 29 53 -7.398 -0.824 -4.294 -1.403 -2.580 -3.928 1.874 -3.303 + D 264 260 6 265 4 0 0 20 45 -10.730 -10.411 -0.514 -1.744 + IL 265 265 5 265 4 1 1 29 54 -3.799 -0.298 -3.230 -6.967 0.000 0.000 0.000 0.000 + IR 266 266 6 266 3 1 1 28 53 -1.087 -1.214 -3.348 0.000 0.000 0.000 0.000 [ MATL 68 ] 79 - U - + - - ML 267 266 6 269 3 1 1 19 35 -5.896 -0.031 -7.885 -2.126 0.474 -1.839 1.072 - D 268 266 6 269 3 0 0 18 34 -14.684 -0.215 -2.855 - IL 269 269 3 269 3 1 1 19 35 -4.852 -0.059 -7.552 0.000 0.000 0.000 0.000 + ML 267 266 6 269 3 1 1 18 33 -7.708 -0.010 -8.804 -2.008 0.366 -1.887 1.133 + D 268 266 6 269 3 0 0 17 32 -14.111 -0.151 -3.329 + IL 269 269 3 269 3 1 1 18 33 -3.377 -0.170 -6.077 0.000 0.000 0.000 0.000 [ MATL 69 ] 81 - U - + - - ML 270 269 3 272 3 1 1 18 34 -16.094 -0.026 -5.819 -2.297 -2.058 -1.462 1.675 - D 271 269 3 272 3 0 0 16 33 -12.088 -1.657 -0.551 - IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + ML 270 269 3 272 3 1 1 17 32 -16.086 -0.034 -5.427 -2.943 -3.543 -2.171 1.833 + D 271 269 3 272 3 0 0 15 32 -11.076 -1.760 -0.506 + IL 272 272 3 272 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 82 - A - + - - ML 273 272 3 275 3 1 1 17 33 -16.079 -0.005 -8.145 1.063 -0.237 -1.082 -0.761 - D 274 272 3 275 3 0 0 15 32 -12.621 -0.938 -1.065 - IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + ML 273 272 3 275 3 1 1 16 31 -16.057 -0.002 -9.542 1.173 -0.189 -1.373 -1.054 + D 274 272 3 275 3 0 0 14 31 -12.516 -0.458 -1.880 + IL 275 275 3 275 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 83 - A - + - - ML 276 275 3 278 3 1 1 16 32 -6.215 -0.021 -9.695 1.502 -3.889 -0.062 -2.824 - D 277 275 3 278 3 0 0 14 30 -11.847 -2.865 -0.214 - IL 278 278 3 278 3 1 1 16 32 -4.731 -0.064 -7.431 0.000 0.000 0.000 0.000 + ML 276 275 3 278 3 1 1 15 30 -8.506 -0.006 -9.211 1.585 -3.905 -0.260 -3.339 + D 277 275 3 278 3 0 0 13 29 -10.856 -6.369 -0.018 + IL 278 278 3 278 3 1 1 15 30 -2.913 -0.240 -5.613 0.000 0.000 0.000 0.000 [ MATL 72 ] 85 - a - + - - ML 279 278 3 281 3 1 1 15 31 -16.102 -0.023 -5.987 0.900 -0.035 -2.059 -0.123 - D 280 278 3 281 3 0 0 14 30 -11.739 -7.252 -0.010 - IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + ML 279 278 3 281 3 1 1 14 29 -16.086 -0.023 -6.001 0.738 -0.010 -1.778 0.067 + D 280 278 3 281 3 0 0 13 29 -11.077 -6.590 -0.016 + IL 281 281 3 281 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 86 - u - + - - ML 282 281 3 284 3 1 1 14 30 -4.580 -0.958 -1.173 0.173 -0.395 -0.499 0.490 - D 283 281 3 284 3 0 0 14 30 -3.307 -5.649 -0.186 - IL 284 284 3 284 3 1 1 16 32 -1.653 -0.555 -9.589 0.000 0.000 0.000 0.000 - [ MATL 74 ] 89 - u - + - - ML 285 284 3 287 2 1 1 1 1 * 0.000 -0.855 -0.157 0.068 0.587 + ML 282 281 3 284 3 1 1 13 28 -5.739 -0.997 -1.058 0.253 -0.358 -0.307 0.287 + D 283 281 3 284 3 0 0 12 28 -4.389 -5.021 -0.118 + IL 284 284 3 284 3 1 1 15 30 -1.739 -0.520 -8.397 0.000 0.000 0.000 0.000 + [ MATL 74 ] 89 - g - + - + ML 285 284 3 287 2 1 1 1 1 * 0.000 -1.050 -0.103 0.405 0.335 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // -HMMER3/f [i1.1.1 | July 2014] +HMMER3/f [3.3.2 | Nov 2020] NAME Cys LENG 90 -MAXL 156 +MAXL 159 ALPH RNA RF yes MM no CONS yes CS yes MAP yes -DATE Fri Jun 26 17:13:50 2015 -COM [1] cmbuild --hand --enone Cys-final-vert.cm ../Cys-2nd-align.sto -NSEQ 1085 -EFFN 22.991848 -CKSUM 4203025139 -STATS LOCAL MSV -8.8759 0.71872 -STATS LOCAL VITERBI -9.3530 0.71872 -STATS LOCAL FORWARD -3.6875 0.71872 +DATE Mon Sep 5 01:53:38 2022 +COM [1] cmbuild --hand --enone ../CMs/vertebrate/TRNAinf-mito-vert-Cys-with-darm.cm ../alignments/vertebrate/mito-vert-Cys-with-darm.sto +NSEQ 1066 +EFFN 18.937538 +CKSUM 4151050929 +STATS LOCAL MSV -8.9001 0.71857 +STATS LOCAL VITERBI -9.2813 0.71857 +STATS LOCAL FORWARD -3.6287 0.71857 HMM A C G U m->m m->i m->d i->m i->i d->m d->d - COMPO 1.36746 1.53071 1.30313 1.35796 + COMPO 1.36874 1.54166 1.29954 1.35135 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 0.00000 * - 1 0.42816 5.36973 1.08842 4.97753 1 A = - ( + 0.01157 5.15838 5.15838 1.46634 0.26236 0.00000 * + 1 0.36093 5.19960 1.24040 4.80560 1 A = - ( 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 2 2.11979 3.00021 0.23963 3.14090 2 G = - ( + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 2 2.09186 3.27994 0.23077 3.10126 2 G = - ( 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 3 3.60680 0.39176 3.14189 1.37122 3 C = - ( + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 3 3.30800 0.43963 2.86450 1.33893 3 C = - ( 1.38629 1.38629 1.38629 1.38629 - 0.01000 5.39873 5.21592 1.46634 0.26236 1.09861 0.40547 - 4 3.90242 0.39480 4.21921 1.23346 4 C = - ( + 0.01267 5.15838 4.98440 1.46634 0.26236 1.09861 0.40547 + 4 3.56569 0.44618 3.74018 1.17797 4 C = - ( 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39782 5.39782 1.46634 0.26236 0.98052 0.47019 - 5 2.76226 0.57058 2.52607 1.23210 5 C = - ( + 0.01158 5.15729 5.15729 1.46634 0.26236 0.98605 0.46688 + 5 2.72031 0.53467 2.65878 1.27924 5 C = - ( 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 6 2.48412 1.23123 2.22652 0.66017 6 U = - ( + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 6 2.56174 1.20070 2.25747 0.65926 6 U = - ( 1.38629 1.38629 1.38629 1.38629 - 0.02007 4.17707 5.39873 0.51179 0.91485 1.09861 0.40547 - 7 2.72444 5.38878 0.07806 5.31096 8 G = - ( + 0.01221 5.05345 5.15838 1.33878 0.30404 1.09861 0.40547 + 7 2.97797 5.24425 0.06383 5.17445 8 G = - ( 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 8 1.03651 2.80180 2.24001 0.73783 9 u + - , + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 8 1.24245 2.66095 2.16658 0.64079 9 U + - , 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 9 1.14228 3.76246 0.48278 3.20355 10 G + - , + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 9 1.22436 4.48882 0.38553 4.21774 10 G + - , 1.38629 1.38629 1.38629 1.38629 - 0.09061 3.85410 2.72670 0.38295 1.14522 1.09861 0.40547 - 10 3.14240 4.76000 0.07442 3.91319 12 G = - < + 0.01343 4.88156 5.15838 1.15576 0.37807 1.09861 0.40547 + 10 3.01459 5.12911 0.06543 4.78556 12 G = - < 1.38629 1.38629 1.38629 1.38629 - 0.03504 5.33588 3.51938 1.46634 0.26236 2.80150 0.06264 - 11 5.59964 5.22219 5.85191 0.01204 13 U = - < + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 11 6.29013 5.29719 6.38030 0.00859 13 U = - < 1.38629 1.38629 1.38629 1.38629 - 0.01204 5.31077 4.95820 1.46634 0.26236 3.07360 0.04736 - 12 2.85821 5.22770 0.07109 5.13475 14 G = - < + 0.01458 5.15838 4.74200 1.46634 0.26236 1.09861 0.40547 + 12 2.84467 5.26319 0.07129 5.20749 14 G = - < 1.38629 1.38629 1.38629 1.38629 - 0.01117 5.30868 5.08934 1.46634 0.26236 3.09296 0.04643 - 13 1.12006 2.11233 1.99737 0.87445 15 u = - < + 0.01298 5.15541 4.94323 1.46634 0.26236 1.25745 0.33460 + 13 1.15433 2.07275 1.97118 0.86845 15 u = - < 1.38629 1.38629 1.38629 1.38629 - 0.08647 5.30746 2.55255 1.46634 0.26236 3.10403 0.04591 - 14 0.53170 2.65084 2.80434 1.26849 16 A + - _ + 0.07276 5.15404 2.74259 1.46634 0.26236 1.32251 0.30988 + 14 0.54500 2.52065 2.66430 1.30896 16 A + - _ 1.38629 1.38629 1.38629 1.38629 - 0.18468 5.23174 1.81226 1.46634 0.26236 3.61111 0.02739 - 15 1.35113 2.11374 1.48299 0.93316 17 u + - _ + 0.16689 5.09363 1.91345 1.46634 0.26236 2.63210 0.07464 + 15 1.33809 2.02818 1.48738 0.96728 17 u + - _ 1.38629 1.38629 1.38629 1.38629 - 0.97569 5.05983 0.48334 1.46634 0.26236 4.19811 0.01514 - 16 1.13624 2.01827 1.73784 0.99374 18 u + - _ + 0.88596 4.94113 0.54380 1.46634 0.26236 3.60967 0.02743 + 16 1.12492 2.02630 1.72834 1.00534 18 u + - _ 1.38629 1.38629 1.38629 1.38629 - 0.91056 4.11726 0.54229 1.46634 0.26236 5.09212 0.00616 - 17 1.20628 1.47733 1.88666 1.13673 19 u + - _ + 0.89299 4.08925 0.55544 1.46634 0.26236 4.76378 0.00857 + 17 1.20761 1.47808 1.88936 1.13369 19 u + - _ 1.38629 1.38629 1.38629 1.38629 - 0.28883 3.28457 1.54456 1.46634 0.26236 2.19623 0.11791 - 18 0.85582 1.73623 1.54334 1.68622 20 a + - _ + 0.27918 3.27492 1.58095 1.46634 0.26236 2.48497 0.08701 + 18 0.82945 1.87302 1.53871 1.63275 20 a + - _ 1.38629 1.38629 1.38629 1.38629 - 0.04768 3.76023 3.76023 1.46634 0.26236 4.69766 0.00916 - 19 1.22653 1.78175 1.60637 1.08549 21 u + - _ + 0.06149 3.51262 3.51262 1.46634 0.26236 4.78267 0.00841 + 19 1.07706 1.78365 1.69744 1.17691 21 a + - _ 1.38629 1.38629 1.38629 1.38629 - 0.48181 3.77528 1.02331 1.46634 0.26236 3.53539 0.02958 - 20 1.49128 1.90375 2.17323 0.66924 22 U + - _ + 0.32718 3.51857 1.38869 1.46634 0.26236 4.96387 0.00701 + 20 1.22767 1.75426 1.89322 0.95866 22 u + - _ 1.38629 1.38629 1.38629 1.38629 - 0.36341 1.29254 3.50248 0.20659 1.67852 0.01053 4.55874 - 21 0.77224 2.45287 2.10158 1.10953 24 a + - _ + 0.18208 2.05202 3.27042 0.51327 0.91264 0.01337 4.32122 + 21 0.88235 2.41601 2.04974 0.99928 24 a + - _ 1.38629 1.38629 1.38629 1.38629 - 0.09730 5.39873 2.42824 1.46634 0.26236 1.09861 0.40547 - 22 1.19556 2.07802 1.59507 0.99589 25 u = - > + 0.01458 5.15838 4.74200 1.46634 0.26236 1.09861 0.40547 + 22 1.19968 2.06185 1.53734 1.03131 25 u = - > 1.38629 1.38629 1.38629 1.38629 - 0.00992 5.31135 5.31135 1.46634 0.26236 3.06812 0.04762 - 23 5.04688 0.07940 5.05077 2.75674 26 C = - > + 0.01160 5.15541 5.15541 1.46634 0.26236 1.25745 0.33460 + 23 5.26550 0.07800 5.13743 2.74892 26 C = - > 1.38629 1.38629 1.38629 1.38629 - 0.00992 5.31135 5.31135 1.46634 0.26236 0.87517 0.53921 - 24 0.02701 5.59712 4.12423 4.99685 27 A = - > + 0.01160 5.15541 5.15541 1.46634 0.26236 0.84108 0.56431 + 24 0.01202 6.46732 4.96107 5.68811 27 A = - > 1.38629 1.38629 1.38629 1.38629 - 0.03019 5.34989 3.68946 1.46634 0.26236 2.26120 0.11007 - 25 4.60676 0.79957 4.73345 0.63168 28 U = - > + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 25 4.89593 0.81682 4.85963 0.61077 28 U = - > 1.38629 1.38629 1.38629 1.38629 - 0.00972 5.33144 5.33144 1.46634 0.26236 0.12218 2.16276 - 26 1.08049 3.58492 0.56370 2.75310 29 G + - , + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 26 0.90186 3.69564 0.66111 2.93607 29 G + - , 1.38629 1.38629 1.38629 1.38629 - 0.03772 3.42661 5.39873 0.25830 1.48000 1.09861 0.40547 - 27 2.19749 1.79519 2.11200 0.50779 31 U = - < + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 27 2.06560 1.74532 2.03678 0.56524 31 U = - < 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 28 2.20091 1.00447 2.50369 0.81809 32 u = - < + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 28 2.07592 1.13313 2.32672 0.78763 32 u = - < 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 29 0.95479 3.12366 0.65844 2.92893 33 G = - < + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 29 1.01728 2.99365 0.63016 2.88574 33 G = - < 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 30 0.76003 4.50966 0.67828 4.27911 34 G = - < + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 30 0.77894 4.17732 0.67965 3.96461 34 G = - < 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 31 0.34924 3.60922 1.43793 3.49711 35 A = - < + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 31 0.42439 3.37517 1.30363 3.21694 35 A = - < 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 32 3.28010 2.41145 3.08652 0.18991 36 U + - _ + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 32 3.13233 2.82651 3.75365 0.13498 36 U + - _ 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 33 4.11257 4.37871 5.05226 0.03594 37 U + - _ + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 33 3.89819 4.14820 4.80908 0.04523 37 U + - _ 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 34 4.88431 4.43025 0.02450 5.35514 38 G * - _ + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 34 4.62826 4.24196 0.03079 5.08812 38 G * - _ 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 35 4.91964 0.03279 4.23260 4.56181 39 C * - _ + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 35 4.75510 0.03862 4.08756 4.38268 39 C * - _ 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 36 0.00936 6.04536 5.60010 5.72939 40 A * - _ + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 36 0.01149 5.82583 5.39596 5.53716 40 A * - _ 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 37 0.02559 4.90803 4.65176 4.78729 41 A + - _ + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 37 0.03335 4.63829 4.39363 4.53101 41 A + - _ 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 38 0.18777 4.25111 1.95390 4.18488 42 A + - _ + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 38 0.18074 4.02468 2.05343 3.95349 42 A + - _ 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 39 3.86343 1.39168 3.47663 0.35748 43 U = - > + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 39 3.57188 1.21099 3.19065 0.45752 43 U = - > 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 40 4.49932 0.71909 4.30306 0.71711 44 u = - > + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 40 4.20212 0.72959 3.97487 0.72537 44 u = - > 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 41 3.14974 0.69891 3.01577 0.88916 45 c = - > + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 41 3.13210 0.67888 2.88925 0.93249 45 C = - > 1.38629 1.38629 1.38629 1.38629 - 0.01985 4.19078 5.39873 0.51805 0.90556 1.09861 0.40547 - 42 0.99015 2.70655 0.86592 1.95867 47 g = - > + 0.01235 5.03302 5.15838 1.31545 0.31246 1.09861 0.40547 + 42 0.98759 2.52638 0.94698 1.83467 47 g = - > 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 43 0.67510 2.38170 1.42770 1.84113 48 A = - > + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 43 0.73857 2.29665 1.41207 1.72615 48 a = - > 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 44 0.24952 2.76343 2.82751 2.31680 49 A + - , + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 44 0.22256 3.06517 2.83994 2.35963 49 A + - , 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 45 2.08270 2.80992 0.25952 3.12871 50 G + - , + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 45 2.21210 4.89967 0.13662 4.53035 50 G + - , 1.38629 1.38629 1.38629 1.38629 - 2.40299 5.39873 0.09979 1.46634 0.26236 1.09861 0.40547 + 2.16265 5.15838 0.12871 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 51 g = - < 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 47 1.80275 1.30601 1.07738 1.49713 52 g = - < + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 47 1.80277 1.30601 1.07738 1.49714 52 g = - < 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 48 1.80023 1.30678 1.07832 1.49662 53 g = - < + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 48 1.80027 1.30677 1.07831 1.49663 53 g = - < 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 49 1.79907 1.30714 1.07876 1.49639 54 g = - < + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 49 1.79912 1.30713 1.07874 1.49640 54 g = - < 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 50 1.79858 1.30729 1.07894 1.49629 55 g = - < + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 50 1.79864 1.30727 1.07892 1.49630 55 g = - < 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 51 1.79843 1.30734 1.07900 1.49626 56 g = - < + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 51 1.79849 1.30732 1.07898 1.49627 56 g = - < 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 52 1.79843 1.30734 1.07900 1.49626 57 g = - < + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 52 1.79849 1.30732 1.07897 1.49628 57 g = - < 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 53 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 54 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 55 1.13112 1.65303 1.51838 1.32128 60 a + - _ 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 56 1.13112 1.65303 1.51838 1.32128 61 a + - _ 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 57 1.72973 1.22043 1.16230 1.53806 62 g = - > + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 57 1.72979 1.22041 1.16228 1.53807 62 g = - > 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 58 1.72969 1.22045 1.16231 1.53804 63 g = - > + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 58 1.72975 1.22043 1.16229 1.53806 63 g = - > 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 59 1.72974 1.22043 1.16229 1.53806 64 g = - > + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 59 1.72980 1.22040 1.16227 1.53808 64 g = - > 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 60 1.72997 1.22033 1.16221 1.53813 65 g = - > + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 60 1.73001 1.22031 1.16219 1.53814 65 g = - > 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 61 1.73049 1.22011 1.16202 1.53828 66 g = - > + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 61 1.73052 1.22009 1.16201 1.53829 66 g = - > 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 62 1.73153 1.21966 1.16164 1.53859 67 g = - > + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 62 1.73155 1.21965 1.16163 1.53859 67 g = - > 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 63 1.73350 1.21882 1.16092 1.53917 68 g = - > 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 0.00994 4.61574 - 64 0.37530 3.21362 1.81878 2.20293 69 A + - , + 0.09531 3.09104 3.09104 1.46634 0.26236 0.01300 4.34952 + 64 0.34557 3.29960 1.87209 2.28785 69 A + - , + 1.38629 1.38629 1.38629 1.38629 + 0.01224 5.04904 5.15838 1.33370 0.30585 1.09861 0.40547 + 65 0.79827 1.76550 2.37154 1.25367 71 a + - , + 1.38629 1.38629 1.38629 1.38629 + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 66 2.58859 4.74336 0.09824 4.63218 72 G = - < + 1.38629 1.38629 1.38629 1.38629 + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 67 2.62301 0.61236 2.27731 1.26306 73 C = - < + 1.38629 1.38629 1.38629 1.38629 + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 68 0.59035 2.54121 1.19248 2.75466 74 A = - < + 1.38629 1.38629 1.38629 1.38629 + 0.02293 5.01133 4.13456 1.29119 0.32151 1.09861 0.40547 + 69 2.00379 2.00953 0.41305 2.66654 76 G = - < + 1.38629 1.38629 1.38629 1.38629 + 0.03896 5.14807 3.42968 1.46634 0.26236 1.56523 0.23451 + 70 1.21542 1.53002 1.10758 1.85453 77 g = - < + 1.38629 1.38629 1.38629 1.38629 + 0.09125 4.79813 2.53878 1.11127 0.39920 0.56315 0.84260 + 71 2.21145 1.18891 2.46297 0.69170 79 U + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.01872 4.56776 4.80823 0.95203 0.48769 0.21836 1.62881 + 72 3.02010 3.16972 2.89057 0.15824 81 U + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.03241 5.14862 3.64658 1.46634 0.26236 1.14133 0.38477 + 73 0.68822 1.57015 2.12873 1.76887 82 A + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.01304 5.13109 4.95518 1.46634 0.26236 0.54976 0.86059 + 74 0.32505 3.35104 1.62878 3.07274 83 A + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.01555 4.80474 4.92788 1.09038 0.40960 1.49089 0.25512 + 75 0.95850 1.45450 2.24053 1.28513 85 a + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.02439 5.14862 4.00152 1.46634 0.26236 1.54540 0.23982 + 76 1.20223 1.63649 1.62375 1.17877 86 u + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.59201 3.75849 0.85929 0.61830 0.77405 1.82021 0.17673 + 77 1.60887 1.52687 1.30699 1.16463 89 u + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.19021 4.06007 1.85810 1.01227 0.45160 0.11075 2.25536 + 78 2.28298 0.90822 1.78287 1.11895 93 c = - > + 1.38629 1.38629 1.38629 1.38629 + 0.01313 5.03220 5.03220 1.46634 0.26236 0.19268 1.74153 + 79 3.05780 0.46865 1.87368 1.75098 94 C = - > + 1.38629 1.38629 1.38629 1.38629 + 0.01171 5.14601 5.14601 1.46634 0.26236 0.49305 0.94357 + 80 2.94823 1.33238 2.44217 0.51626 95 U = - > + 1.38629 1.38629 1.38629 1.38629 + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 81 1.78835 2.40438 0.43142 2.37668 96 G = - > + 1.38629 1.38629 1.38629 1.38629 + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 82 4.15115 0.12722 4.58250 2.36997 97 C = - > + 1.38629 1.38629 1.38629 1.38629 + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 83 5.24248 0.08141 5.12401 2.70394 98 C = - ) + 1.38629 1.38629 1.38629 1.38629 + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 84 1.78304 2.34162 0.47269 2.18585 99 G = - ) + 1.38629 1.38629 1.38629 1.38629 + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 85 1.99001 2.80724 0.32937 2.48226 100 G = - ) + 1.38629 1.38629 1.38629 1.38629 + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 86 2.11321 3.90863 0.18776 3.49764 101 G = - ) + 1.38629 1.38629 1.38629 1.38629 + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 87 1.97544 3.10854 0.26694 2.97767 102 G = - ) + 1.38629 1.38629 1.38629 1.38629 + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 88 3.50481 0.29464 3.02204 1.73473 103 C = - ) + 1.38629 1.38629 1.38629 1.38629 + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 89 5.00348 1.90968 4.97339 0.17645 104 U = - ) + 1.38629 1.38629 1.38629 1.38629 + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 90 4.59398 3.88333 5.11999 0.03736 105 U + - : + 1.38629 1.38629 1.38629 1.38629 + 0.00580 5.15261 * 1.46634 0.26236 0.00000 * +// +INFERNAL1/a [1.1.4 | Dec 2020] +NAME Cys_NoDarm +STATES 227 +NODES 57 +CLEN 71 +W 150 +ALPH RNA +RF yes +CONS yes +MAP yes +DATE Mon Sep 5 15:34:06 2022 +COM [1] cmbuild --hand --enone TRNAinf-mito-vert-Cys-no-darm.cm ../../alignments/vertebrate/mito-vert-Cys-no-darm.sto +COM [2] cmcalibrate --seed 208 TRNAinf-mito-vert-Cys-no-darm.cm +PBEGIN 0.05 +PEND 0.05 +WBETA 1e-07 +QDBBETA1 1e-07 +QDBBETA2 1e-15 +N2OMEGA 1.52588e-05 +N3OMEGA 1.52588e-05 +ELSELF -0.08926734 +NSEQ 58 +EFFN 58.000000 +CKSUM 4249004808 +NULL 0.000 0.000 0.000 0.000 +EFP7GF -11.7066 0.72874 +ECMLC 0.66872 -6.12029 2.75189 1600000 452751 0.002650 +ECMGC 0.42305 -18.18006 -5.93749 1600000 71017 0.005632 +ECMLI 0.60256 -6.11120 3.60790 1600000 419316 0.002862 +ECMGI 0.44035 -15.39476 -3.82828 1600000 65170 0.006138 +CM + [ ROOT 0 ] - - - - - - + S 0 -1 0 1 4 0 1 150 259 -10.830 -12.076 -0.005 -8.529 + IL 1 1 2 1 4 3 21 151 260 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 + IR 2 2 3 2 3 4 22 152 261 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 1 ] - 84 - U - + + MR 3 2 3 5 5 6 27 150 259 -10.891 -0.003 -10.706 -10.918 -11.810 -8.157 -7.312 -9.204 1.996 + D 4 2 3 5 5 2 17 148 257 -5.352 -0.707 -2.978 -4.409 -2.404 + IR 5 5 3 5 5 3 21 150 259 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 2 ] 1 83 a u = = + MP 6 5 3 10 6 7 26 149 258 -11.930 -11.870 -0.003 -10.646 -10.926 -11.321 -7.834 -6.493 -8.024 2.805 -10.137 -11.170 -5.579 -8.075 -7.594 1.916 -8.259 2.363 -5.519 -9.283 -7.418 -6.628 + ML 7 5 3 10 6 3 19 147 256 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 8 5 3 10 6 3 19 147 256 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 9 5 3 10 6 2 15 142 251 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 10 10 5 10 6 3 20 148 257 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 11 11 6 11 5 3 20 148 257 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 3 ] 2 82 G C = = + MP 12 11 6 16 6 7 25 147 256 -11.930 -11.870 -0.003 -10.646 -10.926 -11.321 -6.247 -1.342 -6.085 0.955 -7.225 -6.628 0.365 -6.754 -6.439 3.474 -6.696 -0.110 -2.552 -5.926 -4.299 -5.042 + ML 13 11 6 16 6 3 19 145 254 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 14 11 6 16 6 3 18 145 254 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 15 11 6 16 6 2 15 141 250 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 16 16 5 16 6 3 20 147 255 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 17 17 6 17 5 3 20 146 255 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 4 ] 3 81 C G = = + MP 18 17 6 22 6 6 23 145 254 -11.930 -11.870 -0.003 -10.646 -10.926 -11.321 -8.657 -8.829 -8.063 -4.965 -2.217 -8.267 3.488 -7.354 -8.139 -4.877 -1.524 -7.003 1.767 -8.541 -0.505 -6.930 + ML 19 17 6 22 6 3 18 143 252 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 20 17 6 22 6 3 18 143 252 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 21 17 6 22 6 2 15 139 248 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 22 22 5 22 6 3 19 145 253 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 23 23 6 23 5 3 19 144 253 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 5 ] 4 80 C G = = + MP 24 23 6 28 6 4 21 143 252 -11.930 -11.870 -0.027 -10.646 -10.926 -5.868 -8.846 -9.119 -8.170 -5.346 -6.524 -8.319 3.511 -7.438 -8.272 -5.312 -8.395 -7.501 1.004 -8.684 1.318 -7.073 + ML 25 23 6 28 6 3 18 141 250 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 26 23 6 28 6 3 17 140 249 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 27 23 6 28 6 2 15 138 247 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 28 28 5 28 6 3 19 143 252 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 29 29 6 29 5 3 19 142 251 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 6 ] 5 79 C G = = + MP 30 29 6 34 6 6 20 141 250 -11.906 -11.845 -0.003 -10.622 -10.902 -11.297 -8.294 -8.327 -7.832 -4.356 -6.307 -8.137 3.311 -7.163 -7.864 -4.211 -8.094 -0.959 1.899 -8.250 0.744 -6.640 + ML 31 29 6 34 6 3 16 139 248 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 32 29 6 34 6 3 16 138 247 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 33 29 6 34 6 2 15 138 247 -10.636 -9.334 -0.524 -5.813 -5.831 -1.906 + IL 34 34 5 34 6 3 17 140 249 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 35 35 6 35 5 3 17 140 249 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 7 ] 6 78 a u = = + MP 36 35 6 40 6 5 19 139 248 -11.930 -11.870 -0.040 -5.255 -10.926 -11.321 -4.869 -4.918 -5.008 2.276 -2.016 -5.857 2.168 -5.046 -5.007 0.362 -5.560 -0.751 1.360 -5.162 0.108 -0.586 + ML 37 35 6 40 6 3 16 136 245 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 38 35 6 40 6 3 15 135 244 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 39 35 6 40 6 2 13 131 240 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 40 40 5 40 6 3 17 138 247 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 41 41 6 41 5 3 17 138 247 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 8 ] 7 77 G C = = + MP 42 41 6 46 3 4 17 138 247 -0.012 -20.184 -6.879 -0.646 -1.737 -0.442 0.741 -6.920 -6.389 0.003 -6.476 -6.223 3.385 -0.685 -2.246 -2.254 -5.647 -3.996 -4.754 + ML 43 41 6 46 3 3 14 133 242 -0.807 -2.223 -2.223 -1.299 -1.328 -2.022 1.560 + MR 44 41 6 46 3 3 14 130 239 -1.585 -1.585 -1.585 0.368 -0.385 -0.191 0.094 + D 45 41 6 46 3 2 13 129 238 -1.585 -1.585 -1.585 + IL 46 46 5 46 3 3 15 136 245 -0.244 -12.520 -2.686 0.000 0.000 0.000 0.000 + IR 47 47 6 47 2 3 13 69 88 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ BIF 9 ] - - - - - - + B 48 47 6 109 49 2 12 67 86 + [ BEGR 41 ] - - - - - - + S 49 48 1 50 3 0 1 30 48 -11.945 -0.001 -10.599 + IL 50 50 2 50 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 42 ] 56 - a - + - + ML 51 50 2 53 3 1 2 30 48 -4.524 -0.065 -10.599 0.782 -1.374 -1.177 0.538 + D 52 50 2 53 3 0 0 28 47 -6.174 -1.687 -0.566 + IL 53 53 3 53 3 1 1 30 48 -2.811 -0.259 -5.511 0.000 0.000 0.000 0.000 + [ MATL 43 ] 58 - a - + - + ML 54 53 3 56 5 1 1 29 47 -10.891 -0.028 -10.706 -5.788 -11.810 0.981 -0.382 -2.408 0.098 + D 55 53 3 56 5 0 0 27 46 -4.959 -0.803 -4.221 -2.596 -2.508 + IL 56 56 3 56 5 1 1 29 48 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 + [ MATP 44 ] 59 76 G C = = + MP 57 56 3 61 6 2 2 28 46 -11.907 -11.846 -0.003 -10.623 -10.902 -11.297 -8.708 -2.094 -9.129 -0.381 -9.895 -1.571 -4.681 -9.618 -7.600 3.825 -7.804 -4.021 -1.506 -7.619 -6.863 -8.109 + ML 58 56 3 61 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 59 56 3 61 6 1 1 26 45 -8.208 -6.937 -0.494 -6.915 -2.049 -5.129 1.498 -1.639 -1.343 -1.118 + D 60 56 3 61 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 61 61 5 61 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 62 62 6 62 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 45 ] 60 75 g c = = + MP 63 62 6 67 6 2 2 26 44 -11.930 -11.870 -0.003 -10.646 -10.926 -11.321 -6.645 -5.283 -6.535 1.721 -7.693 -7.302 2.213 -7.076 -6.765 2.891 -7.109 -1.409 -3.065 -6.532 -4.812 -5.431 + ML 64 62 6 67 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 65 62 6 67 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 66 62 6 67 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 67 67 5 67 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 68 68 6 68 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 46 ] 61 74 c g = = + MP 69 68 6 73 6 2 2 24 42 -11.930 -11.870 -0.234 -10.646 -10.926 -2.755 -4.574 -4.626 -4.724 2.060 -4.415 -2.193 2.167 -1.151 -4.754 1.541 -5.306 -0.723 1.114 -4.866 -0.607 -3.814 + ML 70 68 6 73 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 71 68 6 73 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 72 68 6 73 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 73 73 5 73 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 74 74 6 74 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 47 ] 62 73 g c = = + MP 75 74 6 79 6 2 2 22 40 -11.700 -11.639 -0.340 -10.416 -10.695 -2.264 -5.839 -5.197 -5.806 1.347 -5.173 -6.570 1.839 -5.668 -5.839 2.410 -6.291 -1.355 0.960 -5.877 1.013 -4.549 + ML 76 74 6 79 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 77 74 6 79 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 78 74 6 79 6 0 0 19 37 -13.274 -11.972 -7.769 -8.451 -8.469 -0.015 + IL 79 79 5 79 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 80 80 6 80 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 48 ] 63 72 c g = = + MP 81 80 6 85 4 2 2 20 38 -10.394 -10.601 -0.634 -1.498 -4.013 -4.115 -4.171 0.450 -0.222 -5.021 2.239 0.584 -4.192 1.295 -4.751 -2.434 0.785 -4.321 0.343 0.658 + ML 82 80 6 85 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 83 80 6 85 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 84 80 6 85 4 0 0 18 37 -9.792 -9.473 -7.489 -0.012 + IL 85 85 5 85 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 86 86 6 86 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 49 ] 64 - U - + - + ML 87 86 6 89 3 1 1 17 35 -10.693 -0.003 -9.347 -1.550 -0.227 -2.024 1.355 + D 88 86 6 89 3 0 0 16 34 -12.595 -0.181 -3.083 + IL 89 89 3 89 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 50 ] 65 - g - + - + ML 90 89 3 92 3 1 1 16 34 -11.848 -0.001 -10.502 -0.142 -2.154 0.895 0.015 + D 91 89 3 92 3 0 0 15 34 -9.558 -0.099 -3.949 + IL 92 92 3 92 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 51 ] 66 - u - + - + ML 93 92 3 95 3 1 1 14 33 -11.945 -0.001 -10.599 0.267 -0.471 -1.059 0.674 + D 94 92 3 95 3 0 0 16 35 -6.174 -1.687 -0.566 + IL 95 95 3 95 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 52 ] 67 - a - + - + ML 96 95 3 98 3 1 1 13 31 -11.945 -0.001 -10.599 0.740 -1.890 -0.257 0.291 + D 97 95 3 98 3 0 0 15 34 -6.174 -1.687 -0.566 + IL 98 98 3 98 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 53 ] 68 - A - + - + ML 99 98 3 101 3 1 1 12 30 -11.945 -0.001 -10.599 1.193 -2.590 -1.021 0.077 + D 100 98 3 101 3 0 0 14 33 -6.174 -1.687 -0.566 + IL 101 101 3 101 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 54 ] 69 - a - + - + ML 102 101 3 104 3 1 1 10 22 -5.400 -0.869 -1.222 0.648 -0.801 -0.796 0.361 + D 103 101 3 104 3 0 0 9 20 -6.174 -1.687 -0.566 + IL 104 104 3 104 3 1 1 11 23 -2.336 -0.374 -5.036 0.000 0.000 0.000 0.000 + [ MATL 55 ] 71 - a - + - + ML 105 104 3 107 2 1 1 1 1 * 0.000 0.216 0.025 -0.544 0.183 + D 106 104 3 107 2 0 0 0 0 * 0.000 + IL 107 107 3 107 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ END 56 ] - - - - - - + E 108 107 3 -1 0 0 0 0 0 + [ BEGL 10 ] - - - - - - + S 109 48 1 110 1 0 2 48 67 0.000 + [ BIF 11 ] - - - - - - + B 110 109 1 111 164 0 2 48 67 + [ BEGL 12 ] - - - - - - + S 111 110 1 112 4 0 0 28 46 -0.005 -10.010 -9.418 -10.058 + [ MATP 13 ] 19 35 c g = = + MP 112 111 1 116 6 2 2 28 46 -11.930 -11.870 -0.003 -10.646 -10.926 -11.321 -5.008 -5.042 -5.139 -1.513 -4.633 -2.040 2.823 -5.144 -1.094 -1.426 -5.680 -1.107 1.975 -0.623 0.771 -0.832 + ML 113 111 1 116 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 114 111 1 116 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 115 111 1 116 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 116 116 5 116 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 117 117 6 117 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 14 ] 20 34 C G = = + MP 118 117 6 122 6 2 2 26 44 -11.930 -11.870 -0.033 -5.560 -10.926 -11.321 -8.036 -7.984 -7.671 -0.279 -6.209 -8.060 3.126 -7.034 -7.669 -3.780 -7.953 -5.814 2.375 -8.043 0.144 -6.434 + ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 120 117 6 122 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 121 117 6 122 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 122 122 5 122 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 123 123 6 123 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 15 ] 21 33 A U = = + MP 124 123 6 128 6 2 2 24 42 -11.900 -11.840 -0.003 -10.616 -10.896 -11.291 -6.984 -1.312 -6.939 3.216 -8.333 -8.008 -3.468 -7.380 -7.021 2.302 -7.454 -1.316 -0.332 -7.134 -5.447 -5.772 + ML 125 123 6 128 6 1 1 24 42 -7.803 -8.149 -0.328 -2.558 -7.999 -5.529 1.591 -1.891 -1.571 -1.389 + MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 128 128 5 128 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 129 129 6 129 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 16 ] 22 32 A U = = + MP 130 129 6 134 6 2 2 22 40 -11.930 -11.870 -0.003 -10.646 -10.926 -11.321 -7.340 -5.982 -7.366 3.163 -8.910 -8.741 -0.888 -7.685 -7.276 2.597 -7.784 -1.636 -4.268 -7.775 -6.059 -6.132 + ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 134 134 5 134 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 135 135 6 135 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 17 ] 23 31 A U = = + MP 136 135 6 140 4 2 2 20 38 -11.029 -11.236 -0.003 -9.650 -7.845 -0.748 -8.039 3.684 -10.175 -11.310 -5.631 -8.083 -7.601 1.134 -8.270 -1.876 -5.558 -9.337 -7.463 -6.638 + ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 + IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 18 ] 24 - u - + - + ML 142 141 6 144 3 1 1 17 36 -11.945 -0.001 -10.599 -3.867 0.452 0.122 0.561 + D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 + IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 19 ] 25 - U - + - + ML 145 144 3 147 3 1 1 16 34 -11.945 -0.001 -10.599 -8.157 -7.312 -9.204 1.996 + D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 + IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 20 ] 26 - G - * - + ML 148 147 3 150 3 1 1 15 33 -11.945 -0.001 -10.599 -6.571 -8.337 1.993 -7.332 + D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 + IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 21 ] 27 - C - * - + ML 151 150 3 153 3 1 1 13 32 -11.945 -0.001 -10.599 -7.449 1.992 -7.921 -6.474 + D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 + IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 22 ] 28 - A - * - + ML 154 153 3 156 3 1 1 12 30 -11.945 -0.001 -10.599 1.994 -8.070 -7.339 -7.474 + D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 + IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 23 ] 29 - A - + - + ML 157 156 3 159 3 1 1 10 29 -11.945 -0.001 -10.599 1.994 -8.070 -7.339 -7.474 + D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 + IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 24 ] 30 - A - + - + ML 160 159 3 162 2 1 1 1 1 * 0.000 1.786 -6.520 -0.921 -6.413 + D 161 159 3 162 2 0 0 0 0 * 0.000 + IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ END 25 ] - - - - - - + E 163 162 3 -1 0 0 0 0 0 + [ BEGR 26 ] - - - - - - + S 164 110 1 165 3 0 0 31 50 -11.945 -0.001 -10.599 + IL 165 165 2 165 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 27 ] 36 - a - + - + ML 166 165 2 168 3 1 1 31 50 -11.945 -0.001 -10.599 0.694 -0.043 -0.872 -0.209 + D 167 165 2 168 3 0 0 32 51 -6.174 -1.687 -0.566 + IL 168 168 3 168 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 28 ] 37 - u - + - + ML 169 168 3 171 5 1 1 30 49 -10.891 -4.715 -10.706 -10.918 -0.058 -0.754 -0.074 0.021 0.528 + D 170 168 3 171 5 0 0 32 51 -4.959 -0.803 -4.221 -2.596 -2.508 + IL 171 171 3 171 5 1 1 34 53 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 + [ MATP 29 ] 38 55 g c = = + MP 172 171 3 176 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 + ML 173 171 3 176 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 174 171 3 176 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 175 171 3 176 6 0 0 24 43 -15.796 -14.494 -10.291 -10.973 -10.991 -0.003 + IL 176 176 5 176 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 177 177 6 177 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 30 ] 39 54 g c = = + MP 178 177 6 182 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 + ML 179 177 6 182 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 180 177 6 182 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 181 177 6 182 6 0 0 22 41 -15.796 -14.494 -10.291 -10.973 -10.991 -0.003 + IL 182 182 5 182 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 183 183 6 183 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 31 ] 40 53 g c = = + MP 184 183 6 188 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 + ML 185 183 6 188 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 186 183 6 188 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 187 183 6 188 6 0 0 20 39 -15.796 -14.494 -10.291 -10.973 -10.991 -0.003 + IL 188 188 5 188 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 189 189 6 189 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 32 ] 41 52 g c = = + MP 190 189 6 194 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 + ML 191 189 6 194 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 192 189 6 194 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 193 189 6 194 6 0 0 18 37 -15.796 -14.494 -10.291 -10.973 -10.991 -0.003 + IL 194 194 5 194 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 195 195 6 195 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 33 ] 42 51 g c = = + MP 196 195 6 200 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 + ML 197 195 6 200 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 198 195 6 200 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 199 195 6 200 6 0 0 16 35 -15.796 -14.494 -10.291 -10.973 -10.991 -0.003 + IL 200 200 5 200 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 201 201 6 201 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 34 ] 43 50 g c = = + MP 202 201 6 206 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 + ML 203 201 6 206 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 204 201 6 206 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 205 201 6 206 6 0 0 15 34 -15.796 -14.494 -10.291 -10.973 -10.991 -0.003 + IL 206 206 5 206 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 207 207 6 207 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 35 ] 44 49 g c = = + MP 208 207 6 212 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 + ML 209 207 6 212 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 210 207 6 212 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 211 207 6 212 4 0 0 14 33 -11.219 -10.900 -8.916 -0.004 + IL 212 212 5 212 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 213 213 6 213 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 36 ] 45 - a - + - + ML 214 213 6 216 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 + D 215 213 6 216 3 0 0 11 30 -13.328 -8.841 -0.003 + IL 216 216 3 216 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 37 ] 46 - a - + - + ML 217 216 3 219 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 + D 218 216 3 219 3 0 0 10 28 -13.328 -8.841 -0.003 + IL 219 219 3 219 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 38 ] 47 - a - + - + ML 220 219 3 222 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 + D 221 219 3 222 3 0 0 8 27 -13.328 -8.841 -0.003 + IL 222 222 3 222 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 39 ] 48 - a - + - + ML 223 222 3 225 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 + D 224 222 3 225 2 0 0 0 0 * 0.000 + IL 225 225 3 225 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ END 40 ] - - - - - - + E 226 225 3 -1 0 0 0 0 0 +// +HMMER3/f [3.3.2 | Nov 2020] +NAME Cys_NoDarm +LENG 71 +MAXL 156 +ALPH RNA +RF yes +MM no +CONS yes +CS yes +MAP yes +DATE Mon Sep 5 15:34:06 2022 +COM [1] cmbuild --hand --enone TRNAinf-mito-vert-Cys-no-darm.cm ../../alignments/vertebrate/mito-vert-Cys-no-darm.sto +NSEQ 58 +EFFN 50.781860 +CKSUM 4249004808 +STATS LOCAL MSV -8.8144 0.72874 +STATS LOCAL VITERBI -9.2756 0.72874 +STATS LOCAL FORWARD -3.4588 0.72874 +HMM A C G U + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.41648 1.42706 1.32661 1.37815 + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 0.00000 * + 1 0.82632 6.17533 0.58493 5.76979 1 G = - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 2 1.90237 2.49178 0.28962 3.93877 2 G = - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 3 5.62842 0.33840 3.66979 1.35473 3 C = - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 4 5.87648 0.33945 5.81129 1.26572 4 C = - ( + 1.38629 1.38629 1.38629 1.38629 + 0.02170 6.40026 3.92186 1.46634 0.26236 1.09861 0.40547 + 5 5.22687 0.48027 3.28358 1.08318 5 C = - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00339 6.38195 6.38195 1.46634 0.26236 0.15508 1.94033 + 6 1.18519 1.20926 2.09080 1.30083 6 a = - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 7 1.57712 2.70723 0.37826 3.17829 7 G = - ( + 1.38629 1.38629 1.38629 1.38629 + 3.40453 0.03551 6.40026 1.86497 0.16830 1.09861 0.40547 + 8 3.37099 0.78924 2.43306 0.85876 19 c = - < + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 9 2.92940 0.60713 4.80028 0.93285 20 C = - < + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 10 0.50554 4.66112 1.10119 2.90240 21 A = - < + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 11 0.58575 3.33028 0.91709 4.84727 22 A = - < + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 12 0.17693 6.02176 1.85716 5.62025 23 A = - < + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 13 3.89606 1.07449 1.30948 0.99901 24 u + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 14 6.82618 6.27516 7.52867 0.00351 25 U + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 15 5.82173 7.04258 0.00560 6.34850 26 G * - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 16 6.39835 0.00612 6.72087 5.73507 27 C * - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 17 0.00438 6.85482 6.35451 6.45087 28 A * - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 18 0.00438 6.85482 6.35451 6.45087 29 A + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 19 0.14946 5.75171 2.02318 5.67839 30 A + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 20 5.86922 1.74276 5.90199 0.19918 31 U = - > + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 21 5.17714 0.96711 3.30815 0.54889 32 U = - > + 1.38629 1.38629 1.38629 1.38629 + 0.02596 6.40026 3.73100 1.46634 0.26236 1.09861 0.40547 + 22 2.95859 1.08963 4.58771 0.50818 33 U = - > + 1.38629 1.38629 1.38629 1.38629 + 0.00340 6.37770 6.37770 1.46634 0.26236 0.12981 2.10592 + 23 1.12419 4.96112 0.48977 2.89477 34 G = - > + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 24 1.27887 2.46703 0.61072 2.36604 35 G = - > + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 25 0.90953 1.41978 1.98417 1.52315 36 a + - , + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 26 1.89054 1.44014 1.37648 1.02262 37 u + - , + 1.38629 1.38629 1.38629 1.38629 + 3.40453 6.40026 0.03551 1.46634 0.26236 1.09861 0.40547 + 27 1.80313 1.30589 1.07724 1.49721 38 g = - < + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 28 1.79489 1.30843 1.08033 1.49555 39 g = - < + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 29 1.79119 1.30958 1.08172 1.49480 40 g = - < + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 30 1.78969 1.31004 1.08229 1.49450 41 g = - < + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 31 1.78927 1.31018 1.08245 1.49441 42 g = - < + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 32 1.78935 1.31015 1.08242 1.49443 43 g = - < + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 33 1.78966 1.31005 1.08230 1.49449 44 g = - < + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 34 1.13112 1.65303 1.51838 1.32128 45 a + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 35 1.13112 1.65303 1.51838 1.32128 46 a + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 36 1.13112 1.65303 1.51838 1.32128 47 a + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 37 1.13112 1.65303 1.51838 1.32128 48 a + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 38 1.72146 1.22400 1.16534 1.53561 49 g = - > + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 39 1.72127 1.22408 1.16541 1.53555 50 g = - > + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 40 1.72136 1.22404 1.16537 1.53558 51 g = - > + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 41 1.72199 1.22377 1.16514 1.53577 52 g = - > + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 42 1.72365 1.22305 1.16453 1.53626 53 g = - > + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 43 1.72720 1.22152 1.16323 1.53731 54 g = - > + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 44 1.73422 1.21851 1.16066 1.53938 55 g = - > + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 0.00344 5.67504 + 45 0.84889 2.32069 2.18981 1.01620 56 a + - , 1.38629 1.38629 1.38629 1.38629 - 0.02671 3.82439 5.39873 0.37275 1.16744 1.09861 0.40547 - 65 0.77232 1.65897 2.54896 1.31096 71 a + - , + 0.04739 3.10949 6.40026 0.07286 2.65548 1.09861 0.40547 + 46 0.71190 1.65083 3.00938 1.31649 58 a + - , 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 66 2.80159 5.09897 0.07631 5.01236 72 G = - < + 0.02119 6.40026 3.94745 1.46634 0.26236 1.09861 0.40547 + 47 2.75132 3.72256 0.11859 3.73744 59 G = - < 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 67 2.75696 0.61760 2.12805 1.27938 73 C = - < + 0.00339 6.38246 6.38246 1.46634 0.26236 0.15880 1.91846 + 48 1.56463 1.24799 0.71498 4.23008 60 g = - < 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 68 0.59114 2.42604 1.19934 2.87309 74 A = - < + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 49 1.32277 1.13043 1.49656 1.67766 61 c = - < 1.38629 1.38629 1.38629 1.38629 - 0.03357 4.18497 4.02906 0.51538 0.90949 1.09861 0.40547 - 69 2.07147 1.94252 0.42074 2.60239 76 G = - < + 0.17859 6.40026 1.82086 1.46634 0.26236 1.09861 0.40547 + 50 1.81146 1.47790 1.03075 1.37941 62 g = - < 1.38629 1.38629 1.38629 1.38629 - 0.05904 5.38537 2.94231 1.46634 0.26236 1.78071 0.18455 - 70 1.30012 1.41047 1.24730 1.62866 77 g = - < + 0.26488 6.22564 1.46654 1.46634 0.26236 4.59971 0.01011 + 51 2.27846 0.83282 1.75317 1.23955 63 c = - < 1.38629 1.38629 1.38629 1.38629 - 0.15215 3.14409 2.32247 0.21014 1.66321 0.93778 0.49675 - 71 2.30420 1.10926 2.47731 0.72074 79 u + - _ + 0.43344 5.96590 1.05222 1.46634 0.26236 5.37108 0.00466 + 52 2.41695 1.54494 2.75892 0.45551 64 U + - _ 1.38629 1.38629 1.38629 1.38629 - 0.02937 3.90897 4.72379 0.45334 1.00924 0.20961 1.66547 - 72 2.66482 2.60509 2.43806 0.26245 81 U + - _ + 0.00788 5.54034 5.54034 1.46634 0.26236 0.12354 2.15230 + 53 1.48123 2.84454 0.77256 1.37574 65 g + - _ 1.38629 1.38629 1.38629 1.38629 - 0.02546 5.37834 3.88633 1.46634 0.26236 1.12779 0.39119 - 73 0.75202 1.58350 2.00636 1.66679 82 a + - _ + 0.00356 6.33381 6.33381 1.46634 0.26236 0.04915 3.03743 + 54 1.20129 1.71092 2.11021 0.92311 66 u + - _ 1.38629 1.38629 1.38629 1.38629 - 0.01254 5.36892 4.85327 1.46634 0.26236 0.76800 0.62351 - 74 0.37557 3.37646 1.49382 2.91096 83 A + - _ + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 55 0.87779 2.66326 1.56646 1.18484 67 a + - _ 1.38629 1.38629 1.38629 1.38629 - 0.02261 4.09200 5.17532 0.48179 0.96149 1.50363 0.25144 - 75 0.85200 1.46181 2.38697 1.38743 85 a + - _ + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 56 0.56501 3.12760 2.08742 1.33251 68 A + - _ 1.38629 1.38629 1.38629 1.38629 - 0.02048 5.38282 4.15526 1.46634 0.26236 1.87009 0.16737 - 76 1.24292 1.65338 1.71796 1.07696 86 u + - _ + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 57 0.94134 1.93552 1.93274 1.13695 69 a + - _ 1.38629 1.38629 1.38629 1.38629 - 0.56630 3.09643 0.94889 0.45518 1.00604 2.08266 0.13307 - 77 1.59981 1.53752 1.46227 1.04571 89 u + - _ + 0.60222 3.69079 0.84992 0.12821 2.11754 1.09861 0.40547 + 58 1.23539 1.37547 1.76125 1.25622 71 a + - _ 1.38629 1.38629 1.38629 1.38629 - 0.29605 2.55010 1.72498 0.61123 0.78237 0.11126 2.25098 - 78 2.08357 1.04528 1.58342 1.14367 93 c = - > + 0.34297 5.84550 1.24671 1.46634 0.26236 0.59110 0.80681 + 59 1.75589 1.81179 0.97710 1.24659 72 g = - > 1.38629 1.38629 1.38629 1.38629 - 0.01054 5.25139 5.25139 1.46634 0.26236 0.17263 1.84165 - 79 2.90310 0.47087 1.83262 1.82825 94 C = - > + 0.00514 5.96590 5.96590 1.46634 0.26236 0.61199 0.78148 + 60 2.05377 1.09904 1.04936 1.66920 73 g = - > 1.38629 1.38629 1.38629 1.38629 - 0.00922 5.38379 5.38379 1.46634 0.26236 0.38351 1.14402 - 80 3.05974 1.31279 2.35175 0.52962 95 U = - > + 0.00396 6.22564 6.22564 1.46634 0.26236 0.02031 3.90656 + 61 1.91771 1.60901 1.12480 1.11396 74 u = - > 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 81 1.72033 2.22333 0.45931 2.51303 96 G = - > + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 62 4.38316 0.76495 1.23976 1.45798 75 c = - > 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 82 4.40499 0.09677 4.94885 2.61829 97 C = - > + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 63 3.35256 0.10124 5.08293 2.89884 76 C = - > 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 83 5.37737 0.09242 5.27135 2.54439 98 C = - ) + 0.03154 6.40026 3.52722 1.46634 0.26236 1.09861 0.40547 + 64 2.88536 0.40277 1.89066 2.08164 77 C = - ) 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 84 1.74640 2.29280 0.49522 2.16129 99 G = - ) + 0.00342 6.37214 6.37214 1.46634 0.26236 0.10711 2.28700 + 65 1.70264 2.42900 1.04779 0.97032 78 u = - ) 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 85 1.90463 2.86487 0.36824 2.28099 100 G = - ) + 0.02170 6.40026 3.92186 1.46634 0.26236 1.09861 0.40547 + 66 1.44916 5.19661 0.32584 3.27616 79 G = - ) 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 86 2.28325 4.37927 0.14527 3.87664 101 G = - ) + 0.00339 6.38195 6.38195 1.46634 0.26236 0.15508 1.94033 + 67 2.06206 5.94671 0.14306 5.65699 80 G = - ) 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 87 2.04475 3.38959 0.22498 3.26138 102 G = - ) + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 68 1.48334 5.64686 0.26777 5.40078 81 G = - ) 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 88 3.51930 0.29685 2.80645 1.79091 103 C = - ) + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 69 4.21640 0.33531 2.45021 1.69361 82 C = - ) 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 89 5.17621 1.74578 5.14404 0.20579 104 U = - ) + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 70 5.96470 1.43999 5.94813 0.27722 83 U = - ) 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 90 4.86102 4.10153 5.39280 0.02926 105 U + - : + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 71 6.82618 6.27516 7.52867 0.00351 84 U + - : 1.38629 1.38629 1.38629 1.38629 - 0.00455 5.39419 * 1.46634 0.26236 0.00000 * + 0.00167 6.39860 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Gln diff -Nru trnascan-se-2.0.9+ds/lib/models/TRNAinf-mito-vert-Cys.cm trnascan-se-2.0.10+ds/lib/models/TRNAinf-mito-vert-Cys.cm --- trnascan-se-2.0.9+ds/lib/models/TRNAinf-mito-vert-Cys.cm 2015-09-08 19:14:48.000000000 +0000 +++ trnascan-se-2.0.10+ds/lib/models/TRNAinf-mito-vert-Cys.cm 2022-09-05 08:55:07.000000000 +0000 @@ -1,16 +1,16 @@ -INFERNAL1/a [1.1.1 | July 2014] -NAME Cys-2nd-align +INFERNAL1/a [1.1.4 | Dec 2020] +NAME mito-vert-Cys-with-darm STATES 289 NODES 76 CLEN 90 -W 101 +W 95 ALPH RNA RF yes CONS yes MAP yes -DATE Fri Jun 26 17:13:50 2015 -COM [1] cmbuild --hand --enone Cys-final-vert.cm ../Cys-2nd-align.sto -COM [2] cmcalibrate --seed 208 Cys-final-vert.cm +DATE Mon Sep 5 01:53:38 2022 +COM [1] cmbuild --hand --enone ../CMs/vertebrate/TRNAinf-mito-vert-Cys-with-darm.cm ../alignments/vertebrate/mito-vert-Cys-with-darm.sto +COM [2] cmcalibrate --seed 208 ../CMs/vertebrate/TRNAinf-mito-vert-Cys-with-darm.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 @@ -19,298 +19,298 @@ N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 -NSEQ 1085 -EFFN 1085.000000 -CKSUM 4203025139 +NSEQ 1066 +EFFN 1066.000000 +CKSUM 4151050929 NULL 0.000 0.000 0.000 0.000 -EFP7GF -13.5523 0.71872 -ECMLC 0.63230 -7.45037 1.82190 1600000 422055 0.002843 -ECMGC 0.33509 -38.57774 -23.65245 1600000 59441 0.006729 -ECMLI 0.62678 -6.99791 2.27396 1600000 400898 0.002993 -ECMGI 0.35524 -34.86801 -20.94503 1600000 56241 0.007112 +EFP7GF -13.6381 0.71857 +ECMLC 0.63264 -7.96099 1.40511 1600000 449280 0.002671 +ECMGC 0.30150 -45.30517 -29.51296 1600000 46761 0.008554 +ECMLI 0.62763 -7.60085 1.75795 1600000 426743 0.002812 +ECMGI 0.31970 -41.67649 -26.91015 1600000 44903 0.008908 CM [ ROOT 0 ] - - - - - - - S 0 -1 0 1 4 0 1 101 137 -15.012 -16.257 -0.000 -12.711 - IL 1 1 2 1 4 9 31 102 139 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 - IR 2 2 3 2 3 11 32 103 139 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + S 0 -1 0 1 4 0 1 95 118 -14.986 -16.232 -0.000 -12.685 + IL 1 1 2 1 4 17 38 96 119 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 + IR 2 2 3 2 3 17 39 97 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 105 - U - + - MR 3 2 3 5 5 16 39 101 138 -15.061 -0.000 -14.876 -15.088 -15.980 -12.730 -5.008 -13.900 1.989 - D 4 2 3 5 5 7 28 100 136 -5.352 -0.707 -2.978 -4.409 -2.404 - IR 5 5 3 5 5 9 31 101 138 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + MR 3 2 3 5 5 24 46 95 118 -15.035 -0.000 -14.851 -15.063 -15.954 -12.633 -4.718 -13.776 1.986 + D 4 2 3 5 5 14 34 94 116 -5.352 -0.707 -2.978 -4.409 -2.404 + IR 5 5 3 5 5 17 37 95 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 104 A U = = - MP 6 5 3 10 6 17 38 100 137 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.037 -10.697 -12.232 3.426 -14.373 -15.527 -9.831 -12.275 -11.792 1.398 -12.462 1.384 -9.756 -13.537 -11.662 -10.830 - ML 7 5 3 10 6 8 30 98 135 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 8 5 3 10 6 8 30 98 135 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 9 5 3 10 6 5 25 95 131 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 - IL 10 10 5 10 6 9 30 100 136 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 - IR 11 11 6 11 5 9 31 99 136 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + MP 6 5 3 10 6 24 45 94 117 -15.969 -15.909 -0.000 -14.685 -14.965 -15.360 -12.011 -10.671 -12.207 3.537 -14.348 -15.503 -9.806 -12.249 -11.767 1.102 -12.436 1.166 -9.730 -13.512 -11.636 -10.805 + ML 7 5 3 10 6 16 36 93 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 8 5 3 10 6 16 35 92 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 9 5 3 10 6 13 32 90 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 10 10 5 10 6 16 37 94 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 11 11 6 11 5 16 37 93 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 103 G C = = - MP 12 11 6 16 6 17 37 98 135 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -11.597 -9.715 -11.597 0.313 -12.624 -4.466 -1.536 -12.229 -11.226 3.767 -4.912 -0.712 -7.881 -10.963 -3.340 -10.565 - ML 13 11 6 16 6 8 30 96 133 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 14 11 6 16 6 8 30 96 133 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 15 11 6 16 6 5 25 93 129 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 - IL 16 16 5 16 6 9 30 98 134 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 - IR 17 17 6 17 5 9 30 97 134 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + MP 12 11 6 16 6 24 43 92 115 -15.969 -15.909 -0.000 -14.685 -14.965 -15.360 -13.835 -10.519 -15.877 0.433 -15.455 -3.492 -9.790 -15.495 -11.888 3.764 -4.218 -0.354 -10.149 -12.149 -2.880 -14.900 + ML 13 11 6 16 6 15 35 91 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 14 11 6 16 6 15 35 90 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 15 11 6 16 6 12 31 88 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 16 16 5 16 6 16 36 92 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 17 17 6 17 5 16 37 91 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 102 C G = = - MP 18 17 6 22 6 16 35 96 133 -15.995 -15.934 -0.002 -14.710 -9.921 -15.385 -12.996 -13.250 -12.336 -9.458 -10.697 -12.494 3.589 -4.327 -4.604 -3.662 -5.043 -11.588 0.589 -12.843 1.158 -5.388 - ML 19 17 6 22 6 8 29 94 131 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 20 17 6 22 6 8 29 94 131 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 21 17 6 22 6 5 25 91 127 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 - IL 22 22 5 22 6 9 30 96 132 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 - IR 23 23 6 23 5 9 30 95 132 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + MP 18 17 6 22 6 22 42 90 113 -15.969 -15.909 -0.002 -14.685 -9.616 -15.360 -12.953 -13.196 -12.300 -9.396 -10.666 -12.464 3.575 -4.011 -4.160 -3.374 -4.729 -11.513 0.559 -12.804 1.216 -5.086 + ML 19 17 6 22 6 15 35 89 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 20 17 6 22 6 15 35 89 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 21 17 6 22 6 12 31 86 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 22 22 5 22 6 16 36 90 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 23 23 6 23 5 16 36 89 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 101 C G = = - MP 24 23 6 28 6 14 33 94 131 -15.993 -15.932 -0.000 -14.709 -14.989 -15.384 -13.044 -13.325 -4.313 -3.325 -4.588 -12.506 3.491 -11.628 -12.466 -9.533 -12.586 -11.728 0.351 -12.878 1.717 -11.267 - ML 25 23 6 28 6 8 28 92 129 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 26 23 6 28 6 8 29 93 129 -8.231 -6.960 -0.485 -6.939 -2.073 -5.152 -0.824 -1.907 1.465 -1.293 - D 27 23 6 28 6 5 24 89 126 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 - IL 28 28 5 28 6 8 30 94 130 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 - IR 29 29 6 29 5 8 30 93 130 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + MP 24 23 6 28 6 21 40 88 111 -15.967 -15.907 -0.000 -14.683 -14.963 -15.358 -13.018 -13.299 -4.019 -3.038 -4.148 -12.480 3.448 -11.602 -12.439 -9.505 -12.560 -11.701 0.544 -12.852 1.759 -11.241 + ML 25 23 6 28 6 15 34 87 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 26 23 6 28 6 16 36 87 109 -8.404 -7.133 -0.421 -7.112 -2.245 -5.325 -1.056 -2.186 1.567 -1.570 + D 27 23 6 28 6 12 31 84 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 28 28 5 28 6 16 36 88 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 29 29 6 29 5 16 36 87 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 100 C G = = - MP 30 29 6 34 6 12 31 92 129 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -11.241 -11.021 -2.174 -4.098 -6.107 -11.752 3.441 -10.561 -11.018 -6.669 -5.033 -1.543 0.646 -3.671 1.214 -1.007 - ML 31 29 6 34 6 7 28 91 127 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 32 29 6 34 6 7 27 90 127 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 33 29 6 34 6 5 24 88 124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 - IL 34 34 5 34 6 8 29 92 128 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 - IR 35 35 6 35 5 8 29 91 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + MP 30 29 6 34 6 19 38 86 109 -15.969 -15.909 -0.000 -14.685 -14.965 -15.360 -12.919 -13.145 -2.143 -3.870 -5.820 -12.454 3.526 -11.559 -12.371 -9.267 -3.955 -11.424 0.231 -3.343 1.324 -1.615 + ML 31 29 6 34 6 15 34 85 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 32 29 6 34 6 14 34 85 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 33 29 6 34 6 12 31 82 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 34 34 5 34 6 15 35 86 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 35 35 6 35 5 16 35 85 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 99 u g = = - MP 36 35 6 40 6 10 29 90 127 -6.387 -15.934 -0.018 -14.710 -14.990 -15.385 -10.302 -10.005 -10.301 -0.985 -4.016 -6.329 2.184 -9.821 -10.160 -0.318 -3.860 -7.574 1.044 -2.503 2.871 -1.176 - ML 37 35 6 40 6 7 27 89 125 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 38 35 6 40 6 7 26 89 125 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 39 35 6 40 6 5 24 86 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 - IL 40 40 5 40 6 9 28 89 126 -6.473 -6.736 -0.040 -8.392 -9.168 -8.828 0.000 0.000 0.000 0.000 - IR 41 41 6 41 5 8 27 89 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + MP 36 35 6 40 6 17 36 84 107 -10.402 -15.909 -0.001 -14.685 -14.965 -15.360 -10.355 -10.061 -10.346 -2.405 -5.433 -5.970 2.261 -9.860 -10.208 -1.001 -3.014 -7.632 0.850 -2.113 2.962 -0.941 + ML 37 35 6 40 6 14 33 83 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 38 35 6 40 6 14 33 83 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 39 35 6 40 6 12 30 81 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 40 40 5 40 6 15 34 83 106 -3.448 -3.711 -0.366 -5.366 -6.142 -5.803 0.000 0.000 0.000 0.000 + IR 41 41 6 41 5 15 34 83 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 98 G C = = - MP 42 41 6 46 4 8 27 88 125 -15.218 -15.425 -0.000 -13.839 -13.606 -10.564 -14.991 0.090 -15.399 -11.843 -9.852 -14.782 -11.908 3.885 -12.141 -2.664 -10.169 -12.265 -12.232 -13.757 - ML 43 41 6 46 4 6 25 88 124 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 - MR 44 41 6 46 4 6 25 87 123 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 - D 45 41 6 46 4 5 23 86 122 -4.568 -4.250 -2.265 -0.520 - IL 46 46 5 46 4 7 26 89 125 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 - IR 47 47 6 47 3 7 26 88 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + MP 42 41 6 46 4 15 34 82 105 -15.192 -15.399 -0.000 -13.813 -13.631 -10.537 -15.117 -0.405 -15.400 -11.795 -9.827 -14.878 -11.885 3.909 -12.111 -2.220 -10.152 -12.225 -12.219 -13.906 + ML 43 41 6 46 4 13 32 83 105 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 44 41 6 46 4 13 31 82 104 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 45 41 6 46 4 11 30 81 103 -4.568 -4.250 -2.265 -0.520 + IL 46 46 5 46 4 14 33 84 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 47 47 6 47 3 14 33 83 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - + - - ML 48 47 6 50 3 6 25 86 123 -16.127 -0.000 -14.781 0.582 -3.824 -1.593 1.071 - D 49 47 6 50 3 4 23 85 121 -6.174 -1.687 -0.566 - IL 50 50 3 50 3 6 25 87 123 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + ML 48 47 6 50 3 13 32 80 103 -16.102 -0.000 -14.756 0.232 -3.439 -1.438 1.241 + D 49 47 6 50 3 11 30 79 101 -6.174 -1.687 -0.566 + IL 50 50 3 50 3 13 32 82 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - + - - ML 51 50 3 53 2 5 24 85 122 -5.756 -0.027 0.429 -5.173 1.345 -3.548 - D 52 50 3 53 2 4 23 84 121 -8.445 -0.004 - IL 53 53 3 53 2 5 24 85 122 -6.312 -0.018 0.000 0.000 0.000 0.000 + ML 51 50 3 53 2 12 31 79 102 -8.891 -0.003 0.253 -11.396 1.489 -11.069 + D 52 50 3 53 2 11 30 78 101 -8.445 -0.004 + IL 53 53 3 53 2 12 31 79 102 -3.584 -0.126 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - - B 54 53 3 55 164 4 23 84 121 + B 54 53 3 55 164 11 30 78 101 [ BEGL 12 ] - - - - - - - S 55 54 1 56 1 0 3 40 59 0.000 + S 55 54 1 56 1 0 11 40 59 0.000 [ BIF 13 ] - - - - - - - B 56 55 1 57 107 0 3 40 59 + B 56 55 1 57 107 0 11 40 59 [ BEGL 14 ] - - - - - - - S 57 56 1 58 4 0 0 22 41 -0.141 -5.276 -5.558 -4.435 + S 57 56 1 58 4 0 1 22 41 -0.000 -14.097 -13.504 -14.144 [ MATP 15 ] 12 28 G U = = - MP 58 57 1 62 6 2 3 22 41 -15.854 -15.793 -0.000 -14.570 -14.850 -15.245 -11.979 -10.544 -12.199 -1.989 -14.295 -14.384 -9.691 -12.237 -11.660 2.846 -12.291 3.097 -9.645 -13.233 -11.561 -10.799 - ML 59 57 1 62 6 1 1 19 38 -11.623 -11.969 -6.683 -6.378 -0.308 -2.557 -6.461 -5.867 -7.358 1.987 - MR 60 57 1 62 6 1 1 19 37 -11.887 -10.616 -6.525 -10.595 -0.166 -3.378 -4.246 -1.359 -4.982 1.818 - D 61 57 1 62 6 0 0 16 34 -15.594 -14.292 -10.089 -10.771 -10.789 -0.003 + MP 58 57 1 62 6 2 3 22 41 -15.969 -15.909 -0.000 -14.685 -14.965 -15.360 -12.076 -10.662 -12.290 -1.491 -14.397 -14.668 -9.807 -12.330 -11.774 2.808 -12.413 3.111 -9.754 -13.383 -11.668 -10.890 + ML 59 57 1 62 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 60 57 1 62 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 61 57 1 62 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 27 U A = = - MP 64 63 6 68 6 2 2 20 39 -15.854 -15.793 -0.004 -14.570 -14.850 -8.733 -12.504 -12.166 -12.387 -11.785 -10.577 -12.242 -11.331 -12.077 -10.473 -11.784 -12.583 -12.086 3.996 -10.569 -5.807 -5.590 - ML 65 63 6 68 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 66 63 6 68 6 1 1 18 36 -12.798 -11.527 -7.436 -11.505 -3.722 -0.124 0.248 -5.955 1.473 -5.594 - D 67 63 6 68 6 0 0 15 33 -15.782 -14.480 -10.277 -10.959 -10.977 -0.003 + MP 64 63 6 68 6 2 2 20 39 -15.969 -15.909 -0.005 -14.685 -14.965 -8.200 -12.514 -12.176 -12.397 -11.792 -10.588 -12.252 -11.325 -12.087 -10.484 -11.792 -12.593 -12.096 3.996 -10.579 -5.817 -5.600 + ML 65 63 6 68 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 66 63 6 68 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 67 63 6 68 6 0 0 19 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 26 G C = = - MP 70 69 6 74 6 2 3 18 37 -15.851 -15.790 -0.002 -14.566 -9.495 -15.241 -13.586 -5.176 -15.243 -0.199 -15.319 -11.644 -9.709 -14.952 -11.769 3.914 -11.985 -5.692 -10.045 -12.086 -12.118 -14.077 - ML 71 69 6 74 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 72 69 6 74 6 1 1 19 38 -9.217 -7.946 -3.855 -7.924 -0.141 -6.138 -2.138 -2.024 -2.898 1.762 - D 73 69 6 74 6 0 0 14 33 -16.588 -15.286 -11.083 -11.765 -11.783 -0.002 + MP 70 69 6 74 6 2 3 18 37 -15.964 -15.904 -0.002 -14.680 -9.304 -15.355 -13.691 -4.985 -15.327 -0.158 -15.428 -11.762 -9.822 -15.042 -11.883 3.911 -12.100 -5.387 -10.158 -12.202 -12.229 -14.154 + ML 71 69 6 74 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 72 69 6 74 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 73 69 6 74 6 0 0 17 36 -11.984 -10.683 -6.480 -7.162 -7.179 -0.038 IL 74 74 5 74 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 - IR 75 75 6 75 5 1 1 19 37 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + IR 75 75 6 75 5 1 1 19 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 25 a u = = - MP 76 75 6 80 4 2 2 16 35 -15.071 -15.278 -0.123 -3.612 -0.174 -2.399 -2.279 2.420 -7.210 -8.069 -2.483 -5.128 -1.961 -1.158 -5.114 -2.895 2.173 -1.325 0.560 0.925 + MP 76 75 6 80 4 2 2 16 35 -15.185 -15.392 -0.100 -3.897 -0.323 -2.198 -2.516 2.390 -7.322 -8.181 -2.703 -5.009 -1.482 -1.747 -4.933 -2.634 2.183 -1.019 0.816 0.789 ML 77 75 6 80 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 - MR 78 75 6 80 4 1 1 18 37 -7.653 -6.682 -4.549 -0.085 0.104 -1.319 -1.662 1.143 - D 79 75 6 80 4 0 0 14 33 -12.010 -11.692 -9.707 -0.003 + MR 78 75 6 80 4 1 1 19 37 -6.572 -5.601 -3.468 -0.187 1.668 -2.157 -1.811 -1.679 + D 79 75 6 80 4 0 0 17 36 -7.420 -7.101 -5.117 -0.062 IL 80 80 5 80 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 - IR 81 81 6 81 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + IR 81 81 6 81 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - + - - ML 82 81 6 84 3 1 1 14 33 -15.857 -0.284 -2.485 1.355 -2.784 -3.200 0.248 - D 83 81 6 84 3 0 0 11 30 -14.997 -10.510 -0.001 - IL 84 84 3 84 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + ML 82 81 6 84 3 1 1 14 33 -15.994 -0.257 -2.615 1.359 -2.482 -2.864 0.161 + D 83 81 6 84 3 0 0 11 30 -13.725 -9.238 -0.002 + IL 84 84 3 84 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - u - + - - ML 85 84 3 87 3 1 1 13 32 -15.574 -1.775 -0.499 -0.091 -1.599 -0.017 0.801 - D 86 84 3 87 3 0 0 11 29 -15.898 -11.411 -0.001 + ML 85 84 3 87 3 1 1 13 32 -15.737 -1.639 -0.559 -0.070 -1.371 -0.018 0.743 + D 86 84 3 87 3 0 0 11 29 -15.359 -10.872 -0.001 IL 87 87 3 87 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - u - + - - ML 88 87 3 90 3 1 1 13 32 -13.799 -2.982 -0.195 0.481 -2.609 -0.629 0.843 - D 89 87 3 90 3 0 0 11 29 -17.226 -12.739 -0.000 - IL 90 90 3 90 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + ML 88 87 3 90 3 1 1 13 32 -14.099 -3.014 -0.191 0.508 -2.647 -0.601 0.815 + D 89 87 3 90 3 0 0 11 29 -17.107 -12.620 -0.000 + IL 90 90 3 90 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - u - + - - ML 91 90 3 93 3 1 1 14 33 -10.820 -3.924 -0.099 0.351 0.349 -3.023 0.409 - D 92 90 3 93 3 0 0 11 29 -17.510 -3.213 -0.165 + ML 91 90 3 93 3 1 1 14 32 -11.087 -4.190 -0.082 0.355 0.353 -3.313 0.426 + D 92 90 3 93 3 0 0 11 29 -17.476 -3.674 -0.118 IL 93 93 3 93 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - A - + - - ML 94 93 3 96 3 1 2 13 31 -12.900 -0.001 -11.554 1.175 -0.364 -0.068 -6.449 - D 95 93 3 96 3 0 0 8 27 -17.384 -8.045 -0.005 + ML 94 93 3 96 3 1 1 13 31 -12.413 -0.001 -11.067 1.347 -1.110 -0.034 -5.920 + D 95 93 3 96 3 0 0 8 27 -17.405 -9.328 -0.002 IL 96 96 3 96 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 - [ MATL 24 ] 21 - u - + - - ML 97 96 3 99 3 1 1 11 30 -12.943 -1.595 -0.580 0.193 -1.305 -0.172 0.646 - D 98 96 3 99 3 0 0 7 26 -17.378 -5.373 -0.035 + [ MATL 24 ] 21 - a - + - + ML 97 96 3 99 3 1 1 12 30 -12.437 -1.390 -0.694 0.782 -1.608 -0.624 0.382 + D 98 96 3 99 3 0 0 7 26 -17.403 -12.916 -0.000 IL 99 99 3 99 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - U - + - - ML 100 99 3 102 3 1 1 6 10 -0.507 -1.757 -10.670 -0.615 -5.242 -6.139 1.725 - D 101 99 3 102 3 0 0 2 7 -17.460 -0.000 -11.852 - IL 102 102 3 102 3 1 1 5 9 -6.253 -0.022 -8.953 0.000 0.000 0.000 0.000 - [ MATL 26 ] 24 - A - + - - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.026 -2.335 -1.311 0.447 + ML 100 99 3 102 3 1 1 7 12 -0.944 -1.061 -9.704 0.144 -4.183 -4.894 1.489 + D 101 99 3 102 3 0 0 3 8 -17.477 -0.000 -11.869 + IL 102 102 3 102 3 1 1 6 12 -4.932 -0.056 -7.632 0.000 0.000 0.000 0.000 + [ MATL 26 ] 24 - a - + - + ML 103 102 3 105 2 1 1 1 1 * 0.000 0.864 -2.468 -1.256 0.660 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - - S 107 56 1 108 3 0 0 26 45 -16.127 -0.000 -14.781 + S 107 56 1 108 3 0 0 26 45 -16.102 -0.000 -14.756 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - G - + - - ML 109 108 2 111 5 1 1 26 45 -5.010 -0.046 -14.876 -15.088 -15.980 0.540 -4.811 1.220 -2.470 - D 110 108 2 111 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 - IL 111 111 3 111 5 1 1 26 45 -6.917 -0.019 -8.595 -10.428 -9.701 0.000 0.000 0.000 0.000 + ML 109 108 2 111 5 1 1 26 45 -15.035 -0.000 -14.851 -15.063 -15.954 0.776 -5.680 1.098 -2.967 + D 110 108 2 111 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 + IL 111 111 3 111 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 31 48 U A = = - MP 112 111 3 116 6 2 2 25 44 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -3.796 -6.088 -2.877 -2.218 -5.248 -10.602 0.691 -6.262 -1.526 -5.506 -10.219 -1.684 3.446 -1.942 0.359 -0.355 + MP 112 111 3 116 6 2 2 25 44 -15.969 -15.909 -0.000 -14.685 -14.965 -15.360 -3.162 -5.712 -2.539 -1.862 -4.867 -10.041 0.731 -5.817 -2.062 -5.371 -9.721 -1.332 3.429 -2.243 0.213 -0.138 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 - IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + IR 117 117 6 117 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 32 47 u a = = - MP 118 117 6 122 6 2 2 23 42 -15.995 -6.415 -0.017 -14.710 -14.990 -15.385 -10.292 -9.994 -10.293 0.577 -5.339 -11.137 2.598 -7.004 -10.151 -1.425 -10.664 -2.856 2.750 -5.469 -0.182 -1.861 - ML 119 117 6 122 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 120 117 6 122 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + MP 118 117 6 122 6 2 2 23 42 -15.969 -10.135 -0.001 -14.685 -14.965 -15.360 -10.263 -9.966 -10.264 0.777 -5.019 -11.108 2.347 -6.701 -10.122 -1.057 -10.636 -2.516 2.804 -5.152 0.229 -1.670 + ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 - IR 123 123 6 123 5 1 1 22 41 -5.618 -0.046 -9.130 -7.297 -8.403 0.000 0.000 0.000 0.000 - [ MATP 32 ] 33 45 g c = = - MP 124 123 6 128 6 2 2 21 40 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -9.965 -3.980 -9.783 2.902 -4.952 -5.010 -2.728 -10.473 -10.221 2.968 -10.467 -3.121 -2.002 -9.637 -7.988 -4.366 + IR 123 123 6 123 5 1 1 23 41 -3.091 -0.289 -6.602 -4.770 -5.876 0.000 0.000 0.000 0.000 + [ MATP 32 ] 33 45 G C = = + MP 124 123 6 128 6 2 2 21 40 -15.969 -15.909 -0.000 -14.685 -14.965 -15.360 -9.939 -5.110 -9.757 2.850 -4.619 -4.661 -2.447 -10.448 -10.196 3.019 -10.442 -2.764 -2.509 -9.612 -7.962 -3.999 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 - [ MATP 33 ] 34 44 a u = = - MP 130 129 6 134 6 2 2 19 38 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.115 -3.925 -12.334 2.996 -14.433 -14.561 -9.832 -12.373 -11.801 2.950 -12.433 -2.160 -9.784 -13.381 -11.699 -10.934 + [ MATP 33 ] 34 44 A U = = + MP 130 129 6 134 6 2 2 19 38 -15.969 -15.909 -0.000 -14.685 -14.965 -15.360 -12.081 -3.565 -12.297 3.005 -14.401 -14.614 -9.806 -12.337 -11.775 2.927 -12.411 -1.835 -9.755 -13.371 -11.669 -10.897 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 43 A U = = - MP 136 135 6 140 4 2 2 17 35 -15.218 -15.425 -0.000 -13.839 -12.035 -0.055 -3.881 3.627 -14.367 -15.507 -9.823 -3.461 -11.791 1.005 -12.460 -1.163 -9.749 -4.972 -11.654 -4.889 + MP 136 135 6 140 4 2 2 17 35 -15.192 -15.399 -0.000 -13.813 -12.009 0.073 -3.586 3.596 -14.341 -15.479 -9.796 -3.696 -11.765 1.345 -12.434 -3.822 -9.723 -4.672 -11.628 -4.588 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - U - + - - ML 142 141 6 144 3 1 1 14 33 -16.127 -0.000 -14.781 -3.614 -1.544 -2.560 1.768 + ML 142 141 6 144 3 1 1 14 33 -16.102 -0.000 -14.756 -3.166 -2.443 -4.306 1.870 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - + - - ML 145 144 3 147 3 1 1 13 31 -16.127 -0.000 -14.781 -5.245 -11.437 -13.226 1.990 + ML 145 144 3 147 3 1 1 13 31 -16.102 -0.000 -14.756 -4.949 -11.351 -13.076 1.988 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - G - * - - ML 148 147 3 150 3 1 1 12 30 -16.127 -0.000 -14.781 -10.685 -4.359 1.982 -11.396 + ML 148 147 3 150 3 1 1 12 30 -16.102 -0.000 -14.756 -10.662 -4.070 1.978 -11.370 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - C - * - - ML 151 150 3 153 3 1 1 10 29 -16.127 -0.000 -14.781 -10.457 1.982 -4.348 -9.927 + ML 151 150 3 153 3 1 1 11 29 -16.102 -0.000 -14.756 -10.425 1.978 -4.061 -9.897 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - A - * - - ML 154 153 3 156 3 1 1 9 28 -16.127 -0.000 -14.781 2.000 -12.065 -11.312 -11.398 + ML 154 153 3 156 3 1 1 9 28 -16.102 -0.000 -14.756 2.000 -12.040 -11.286 -11.373 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - A - + - - ML 157 156 3 159 3 1 1 7 26 -16.127 -0.000 -14.781 1.984 -6.229 -5.892 -6.149 + ML 157 156 3 159 3 1 1 7 26 -16.102 -0.000 -14.756 1.980 -5.935 -5.552 -5.859 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - A - + - - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.771 -5.980 -0.852 -5.954 + ML 160 159 3 162 2 1 1 1 1 * 0.000 1.791 -5.661 -1.003 -5.668 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - - S 164 54 1 165 3 0 3 55 91 -16.127 -0.000 -14.781 - IL 165 165 2 165 3 1 4 57 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + S 164 54 1 165 3 0 4 48 71 -16.102 -0.000 -14.756 + IL 165 165 2 165 3 1 6 51 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 49 - A - + - - ML 166 165 2 168 3 1 3 55 91 -16.127 -0.000 -14.781 1.708 -2.361 -2.379 -1.531 - D 167 165 2 168 3 0 1 53 89 -6.174 -1.687 -0.566 - IL 168 168 3 168 3 1 3 56 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + ML 166 165 2 168 3 1 4 48 71 -16.102 -0.000 -14.756 1.756 -3.253 -2.435 -1.588 + D 167 165 2 168 3 0 3 47 69 -6.174 -1.687 -0.566 + IL 168 168 3 168 3 1 5 50 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 50 - G - + - - ML 169 168 3 171 2 1 2 54 90 -16.782 -0.000 -1.167 -2.250 1.704 -3.552 - D 170 168 3 171 2 0 1 53 89 -8.445 -0.004 - IL 171 171 3 171 2 1 2 54 91 -1.823 -0.479 0.000 0.000 0.000 0.000 + ML 169 168 3 171 2 1 3 47 70 -16.757 -0.000 -1.050 -12.283 1.814 -11.336 + D 170 168 3 171 2 0 2 46 69 -8.445 -0.004 + IL 171 171 3 171 2 1 4 48 71 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - - B 172 171 3 173 229 0 1 53 89 + B 172 171 3 173 229 0 2 46 69 [ BEGL 47 ] - - - - - - - S 173 172 1 174 4 0 0 27 46 -7.818 -14.122 -13.529 -0.007 + S 173 172 1 174 4 0 0 27 46 -7.793 -14.097 -13.504 -0.007 [ MATP 48 ] 51 68 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 177 173 1 178 6 0 0 21 40 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 + D 177 173 1 178 6 0 0 21 40 -19.983 -18.682 -14.479 -15.161 -15.178 -0.000 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 52 67 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 183 179 6 184 6 0 0 19 38 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 + D 183 179 6 184 6 0 0 19 38 -19.983 -18.682 -14.479 -15.161 -15.178 -0.000 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 53 66 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 189 185 6 190 6 0 0 17 36 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 + D 189 185 6 190 6 0 0 17 36 -19.983 -18.682 -14.479 -15.161 -15.178 -0.000 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 54 65 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 195 191 6 196 6 0 0 15 34 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 + D 195 191 6 196 6 0 0 15 34 -19.983 -18.682 -14.479 -15.161 -15.178 -0.000 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 55 64 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 201 197 6 202 6 0 0 13 32 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 + D 201 197 6 202 6 0 0 13 32 -19.983 -18.682 -14.479 -15.161 -15.178 -0.000 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 56 63 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 207 203 6 208 6 0 0 12 31 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 + D 207 203 6 208 6 0 0 12 31 -19.983 -18.682 -14.479 -15.161 -15.178 -0.000 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 57 62 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 - D 213 209 6 214 4 0 0 11 30 -15.431 -15.112 -13.128 -0.000 + D 213 209 6 214 4 0 0 11 31 -15.405 -15.086 -13.102 -0.000 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 - D 217 215 6 218 3 0 0 8 27 -17.544 -13.057 -0.000 + D 217 215 6 218 3 0 0 8 27 -17.518 -13.031 -0.000 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 59 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 - D 220 218 3 221 3 0 0 7 25 -17.544 -13.057 -0.000 + D 220 218 3 221 3 0 0 7 25 -17.518 -13.031 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 60 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 - D 223 221 3 224 3 0 0 5 24 -17.544 -13.057 -0.000 + D 223 221 3 224 3 0 0 5 24 -17.518 -13.031 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 61 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 @@ -319,373 +319,373 @@ [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - - S 229 172 1 230 3 0 1 45 82 -16.127 -0.000 -14.781 - IL 230 230 2 230 3 1 1 47 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + S 229 172 1 230 3 0 2 33 58 -16.102 -0.000 -14.756 + IL 230 230 2 230 3 1 1 36 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 69 - A - + - - ML 231 230 2 233 3 1 2 45 82 -5.703 -0.028 -14.781 1.531 -3.960 -0.572 -1.426 - D 232 230 2 233 3 0 0 43 80 -6.174 -1.687 -0.566 - IL 233 233 3 233 3 1 1 45 82 -5.225 -0.045 -7.925 0.000 0.000 0.000 0.000 + ML 231 230 2 233 3 1 3 33 58 -10.336 -0.001 -14.756 1.580 -4.607 -0.656 -1.582 + D 232 230 2 233 3 0 0 32 56 -6.174 -1.687 -0.566 + IL 233 233 3 233 3 1 1 34 58 -2.023 -0.482 -4.724 0.000 0.000 0.000 0.000 [ MATL 62 ] 71 - A - + - - ML 234 233 3 236 5 1 1 44 81 -15.061 -0.000 -14.876 -15.088 -15.980 1.024 -0.403 -2.543 0.054 - D 235 233 3 236 5 0 0 43 79 -4.959 -0.803 -4.221 -2.596 -2.508 - IL 236 236 3 236 5 1 1 44 81 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 + ML 234 233 3 236 5 1 3 32 57 -15.035 -0.000 -14.851 -15.063 -15.954 1.011 -0.626 -2.171 0.157 + D 235 233 3 236 5 0 0 31 55 -4.959 -0.803 -4.221 -2.596 -2.508 + IL 236 236 3 236 5 1 1 32 57 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 72 97 G C = = - MP 237 236 3 241 6 2 2 43 80 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.628 -4.049 -15.055 -0.232 -15.410 -11.833 -9.852 -14.834 -2.879 3.885 -12.139 -2.483 -10.173 -12.258 -12.237 -13.831 - ML 238 236 3 241 6 1 1 42 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 239 236 3 241 6 1 1 42 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 240 236 3 241 6 0 0 39 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 - IL 241 241 5 241 6 1 1 43 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 - IR 242 242 6 242 5 1 1 42 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + MP 237 236 3 241 6 2 3 31 56 -15.969 -15.909 -0.000 -14.685 -14.965 -15.360 -13.530 -5.438 -14.820 0.150 -15.346 -11.842 -9.826 -14.638 -2.572 3.854 -12.121 -2.089 -10.135 -12.255 -12.194 -13.566 + ML 238 236 3 241 6 1 1 30 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 239 236 3 241 6 1 1 30 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 240 236 3 241 6 0 0 28 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 241 241 5 241 6 1 1 31 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 242 242 6 242 5 1 1 31 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 73 96 C G = = - MP 243 242 6 247 6 2 2 41 78 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -10.293 -4.656 -10.294 -1.265 -4.457 -11.138 3.314 -9.812 -10.152 0.401 -10.665 -3.698 1.190 -6.288 0.822 -3.523 - ML 244 242 6 247 6 1 1 40 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 245 242 6 247 6 1 1 41 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 246 242 6 247 6 0 0 37 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 - IL 247 247 5 247 6 1 1 41 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 - IR 248 248 6 248 5 1 1 41 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + MP 243 242 6 247 6 2 3 29 54 -15.969 -15.909 -0.000 -14.685 -14.965 -15.360 -10.268 -4.202 -10.268 -1.062 -4.060 -11.112 3.370 -9.787 -10.126 -0.368 -10.640 -3.376 0.894 -5.845 1.141 -3.133 + ML 244 242 6 247 6 1 1 28 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 245 242 6 247 6 1 1 30 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 246 242 6 247 6 0 0 27 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 247 247 5 247 6 1 1 29 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 248 248 6 248 5 1 1 29 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 74 95 A U = = - MP 249 248 6 253 6 2 2 39 76 -6.403 -15.934 -0.041 -9.153 -14.990 -6.092 -9.974 -1.834 -4.972 3.503 -10.922 -6.283 0.075 -3.819 -4.557 1.258 -10.477 -0.806 -2.347 -9.650 -7.997 -8.758 - ML 250 248 6 253 6 1 1 39 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 - MR 251 248 6 253 6 1 1 40 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 252 248 6 253 6 0 0 35 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 - IL 253 253 5 253 6 1 1 38 75 -6.458 -6.721 -0.041 -8.376 -9.153 -8.813 0.000 0.000 0.000 0.000 - IR 254 254 6 254 5 1 1 39 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + MP 249 248 6 253 6 2 2 27 52 -9.893 -15.909 -0.022 -8.730 -14.965 -6.419 -9.982 -1.734 -4.556 3.580 -10.938 -5.936 -0.604 -3.427 -4.092 0.990 -10.484 -0.448 -2.811 -9.665 -8.013 -8.766 + ML 250 248 6 253 6 1 1 27 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 251 248 6 253 6 1 1 29 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 252 248 6 253 6 0 0 25 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 253 253 5 253 6 1 1 27 51 -3.705 -3.968 -0.300 -5.623 -6.400 -6.060 0.000 0.000 0.000 0.000 + IR 254 254 6 254 5 1 1 28 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 76 94 G C = = - MP 255 254 6 259 6 2 2 37 74 -15.971 -15.910 -0.268 -3.108 -6.937 -4.468 -9.947 -4.393 -9.767 0.345 -10.878 -10.363 1.354 -10.450 -10.201 3.460 -10.449 -1.449 -0.901 -9.622 -2.224 -8.730 - ML 256 254 6 259 6 1 1 39 75 -8.140 -8.486 -3.200 -0.210 -8.336 -5.865 1.710 -2.332 -1.968 -1.871 - MR 257 254 6 259 6 1 1 40 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 - D 258 254 6 259 6 0 0 28 65 -13.972 -12.670 -8.467 -9.149 -9.167 -0.009 - IL 259 259 5 259 6 1 1 37 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 - IR 260 260 6 260 5 1 1 37 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + MP 255 254 6 259 6 2 2 25 50 -15.949 -15.888 -0.197 -3.362 -8.236 -5.206 -9.926 -4.035 -9.745 0.413 -10.870 -10.341 1.256 -10.433 -10.181 3.489 -10.428 -1.208 -1.882 -9.600 -1.840 -8.710 + ML 256 254 6 259 6 1 1 26 50 -8.447 -8.793 -3.507 -0.167 -8.643 -6.172 1.793 -2.774 -2.366 -2.357 + MR 257 254 6 259 6 1 1 29 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 258 254 6 259 6 0 0 21 46 -13.632 -12.330 -8.127 -8.810 -8.827 -0.012 + IL 259 259 5 259 6 1 1 27 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 260 260 6 260 5 1 1 27 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 77 93 g c = = - MP 261 260 6 265 4 2 2 34 70 -5.667 -15.132 -0.215 -3.071 -9.430 -0.177 -3.527 2.199 -10.205 0.327 0.567 -0.825 -9.688 2.387 -9.988 -0.838 -1.549 -1.678 -1.056 -2.267 - ML 262 260 6 265 4 1 1 38 74 -2.294 -11.036 -0.332 -9.765 -7.981 1.448 -9.039 0.340 - MR 263 260 6 265 4 1 1 40 76 -8.575 -0.264 -5.471 -2.815 -4.078 -5.587 1.958 -4.812 - D 264 260 6 265 4 0 0 26 62 -11.371 -11.052 -1.395 -0.692 - IL 265 265 5 265 4 1 1 40 76 -7.463 -0.021 -6.895 -10.632 0.000 0.000 0.000 0.000 - IR 266 266 6 266 3 1 1 39 75 -0.732 -1.411 -5.499 0.000 0.000 0.000 0.000 + MP 261 260 6 265 4 2 2 22 47 -10.070 -15.181 -0.143 -3.417 -9.709 0.195 -3.996 2.349 -10.647 0.675 -0.093 -1.229 -9.966 2.405 -10.215 -1.118 -2.022 -5.991 -0.758 -3.005 + ML 262 260 6 265 4 1 1 25 50 -5.791 -10.775 -0.029 -9.504 -7.648 1.696 -8.431 -0.410 + MR 263 260 6 265 4 1 1 29 53 -7.398 -0.824 -4.294 -1.403 -2.580 -3.928 1.874 -3.303 + D 264 260 6 265 4 0 0 20 45 -10.730 -10.411 -0.514 -1.744 + IL 265 265 5 265 4 1 1 29 54 -3.799 -0.298 -3.230 -6.967 0.000 0.000 0.000 0.000 + IR 266 266 6 266 3 1 1 28 53 -1.087 -1.214 -3.348 0.000 0.000 0.000 0.000 [ MATL 68 ] 79 - U - + - - ML 267 266 6 269 3 1 1 19 35 -5.896 -0.031 -7.885 -2.126 0.474 -1.839 1.072 - D 268 266 6 269 3 0 0 18 34 -14.684 -0.215 -2.855 - IL 269 269 3 269 3 1 1 19 35 -4.852 -0.059 -7.552 0.000 0.000 0.000 0.000 + ML 267 266 6 269 3 1 1 18 33 -7.708 -0.010 -8.804 -2.008 0.366 -1.887 1.133 + D 268 266 6 269 3 0 0 17 32 -14.111 -0.151 -3.329 + IL 269 269 3 269 3 1 1 18 33 -3.377 -0.170 -6.077 0.000 0.000 0.000 0.000 [ MATL 69 ] 81 - U - + - - ML 270 269 3 272 3 1 1 18 34 -16.094 -0.026 -5.819 -2.297 -2.058 -1.462 1.675 - D 271 269 3 272 3 0 0 16 33 -12.088 -1.657 -0.551 - IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + ML 270 269 3 272 3 1 1 17 32 -16.086 -0.034 -5.427 -2.943 -3.543 -2.171 1.833 + D 271 269 3 272 3 0 0 15 32 -11.076 -1.760 -0.506 + IL 272 272 3 272 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 82 - A - + - - ML 273 272 3 275 3 1 1 17 33 -16.079 -0.005 -8.145 1.063 -0.237 -1.082 -0.761 - D 274 272 3 275 3 0 0 15 32 -12.621 -0.938 -1.065 - IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + ML 273 272 3 275 3 1 1 16 31 -16.057 -0.002 -9.542 1.173 -0.189 -1.373 -1.054 + D 274 272 3 275 3 0 0 14 31 -12.516 -0.458 -1.880 + IL 275 275 3 275 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 83 - A - + - - ML 276 275 3 278 3 1 1 16 32 -6.215 -0.021 -9.695 1.502 -3.889 -0.062 -2.824 - D 277 275 3 278 3 0 0 14 30 -11.847 -2.865 -0.214 - IL 278 278 3 278 3 1 1 16 32 -4.731 -0.064 -7.431 0.000 0.000 0.000 0.000 + ML 276 275 3 278 3 1 1 15 30 -8.506 -0.006 -9.211 1.585 -3.905 -0.260 -3.339 + D 277 275 3 278 3 0 0 13 29 -10.856 -6.369 -0.018 + IL 278 278 3 278 3 1 1 15 30 -2.913 -0.240 -5.613 0.000 0.000 0.000 0.000 [ MATL 72 ] 85 - a - + - - ML 279 278 3 281 3 1 1 15 31 -16.102 -0.023 -5.987 0.900 -0.035 -2.059 -0.123 - D 280 278 3 281 3 0 0 14 30 -11.739 -7.252 -0.010 - IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + ML 279 278 3 281 3 1 1 14 29 -16.086 -0.023 -6.001 0.738 -0.010 -1.778 0.067 + D 280 278 3 281 3 0 0 13 29 -11.077 -6.590 -0.016 + IL 281 281 3 281 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 86 - u - + - - ML 282 281 3 284 3 1 1 14 30 -4.580 -0.958 -1.173 0.173 -0.395 -0.499 0.490 - D 283 281 3 284 3 0 0 14 30 -3.307 -5.649 -0.186 - IL 284 284 3 284 3 1 1 16 32 -1.653 -0.555 -9.589 0.000 0.000 0.000 0.000 - [ MATL 74 ] 89 - u - + - - ML 285 284 3 287 2 1 1 1 1 * 0.000 -0.855 -0.157 0.068 0.587 + ML 282 281 3 284 3 1 1 13 28 -5.739 -0.997 -1.058 0.253 -0.358 -0.307 0.287 + D 283 281 3 284 3 0 0 12 28 -4.389 -5.021 -0.118 + IL 284 284 3 284 3 1 1 15 30 -1.739 -0.520 -8.397 0.000 0.000 0.000 0.000 + [ MATL 74 ] 89 - g - + - + ML 285 284 3 287 2 1 1 1 1 * 0.000 -1.050 -0.103 0.405 0.335 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // -HMMER3/f [i1.1.1 | July 2014] -NAME Cys-2nd-align +HMMER3/f [3.3.2 | Nov 2020] +NAME mito-vert-Cys-with-darm LENG 90 -MAXL 156 +MAXL 159 ALPH RNA RF yes MM no CONS yes CS yes MAP yes -DATE Fri Jun 26 17:13:50 2015 -COM [1] cmbuild --hand --enone Cys-final-vert.cm ../Cys-2nd-align.sto -NSEQ 1085 -EFFN 22.991848 -CKSUM 4203025139 -STATS LOCAL MSV -8.8759 0.71872 -STATS LOCAL VITERBI -9.3530 0.71872 -STATS LOCAL FORWARD -3.6875 0.71872 +DATE Mon Sep 5 01:53:38 2022 +COM [1] cmbuild --hand --enone ../CMs/vertebrate/TRNAinf-mito-vert-Cys-with-darm.cm ../alignments/vertebrate/mito-vert-Cys-with-darm.sto +NSEQ 1066 +EFFN 18.937538 +CKSUM 4151050929 +STATS LOCAL MSV -8.9001 0.71857 +STATS LOCAL VITERBI -9.2813 0.71857 +STATS LOCAL FORWARD -3.6287 0.71857 HMM A C G U m->m m->i m->d i->m i->i d->m d->d - COMPO 1.36746 1.53071 1.30313 1.35796 + COMPO 1.36874 1.54166 1.29954 1.35135 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 0.00000 * - 1 0.42816 5.36973 1.08842 4.97753 1 A = - ( + 0.01157 5.15838 5.15838 1.46634 0.26236 0.00000 * + 1 0.36093 5.19960 1.24040 4.80560 1 A = - ( 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 2 2.11979 3.00021 0.23963 3.14090 2 G = - ( + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 2 2.09186 3.27994 0.23077 3.10126 2 G = - ( 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 3 3.60680 0.39176 3.14189 1.37122 3 C = - ( + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 3 3.30800 0.43963 2.86450 1.33893 3 C = - ( 1.38629 1.38629 1.38629 1.38629 - 0.01000 5.39873 5.21592 1.46634 0.26236 1.09861 0.40547 - 4 3.90242 0.39480 4.21921 1.23346 4 C = - ( + 0.01267 5.15838 4.98440 1.46634 0.26236 1.09861 0.40547 + 4 3.56569 0.44618 3.74018 1.17797 4 C = - ( 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39782 5.39782 1.46634 0.26236 0.98052 0.47019 - 5 2.76226 0.57058 2.52607 1.23210 5 C = - ( + 0.01158 5.15729 5.15729 1.46634 0.26236 0.98605 0.46688 + 5 2.72031 0.53467 2.65878 1.27924 5 C = - ( 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 6 2.48412 1.23123 2.22652 0.66017 6 U = - ( + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 6 2.56174 1.20070 2.25747 0.65926 6 U = - ( 1.38629 1.38629 1.38629 1.38629 - 0.02007 4.17707 5.39873 0.51179 0.91485 1.09861 0.40547 - 7 2.72444 5.38878 0.07806 5.31096 8 G = - ( + 0.01221 5.05345 5.15838 1.33878 0.30404 1.09861 0.40547 + 7 2.97797 5.24425 0.06383 5.17445 8 G = - ( 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 8 1.03651 2.80180 2.24001 0.73783 9 u + - , + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 8 1.24245 2.66095 2.16658 0.64079 9 U + - , 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 9 1.14228 3.76246 0.48278 3.20355 10 G + - , + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 9 1.22436 4.48882 0.38553 4.21774 10 G + - , 1.38629 1.38629 1.38629 1.38629 - 0.09061 3.85410 2.72670 0.38295 1.14522 1.09861 0.40547 - 10 3.14240 4.76000 0.07442 3.91319 12 G = - < + 0.01343 4.88156 5.15838 1.15576 0.37807 1.09861 0.40547 + 10 3.01459 5.12911 0.06543 4.78556 12 G = - < 1.38629 1.38629 1.38629 1.38629 - 0.03504 5.33588 3.51938 1.46634 0.26236 2.80150 0.06264 - 11 5.59964 5.22219 5.85191 0.01204 13 U = - < + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 11 6.29013 5.29719 6.38030 0.00859 13 U = - < 1.38629 1.38629 1.38629 1.38629 - 0.01204 5.31077 4.95820 1.46634 0.26236 3.07360 0.04736 - 12 2.85821 5.22770 0.07109 5.13475 14 G = - < + 0.01458 5.15838 4.74200 1.46634 0.26236 1.09861 0.40547 + 12 2.84467 5.26319 0.07129 5.20749 14 G = - < 1.38629 1.38629 1.38629 1.38629 - 0.01117 5.30868 5.08934 1.46634 0.26236 3.09296 0.04643 - 13 1.12006 2.11233 1.99737 0.87445 15 u = - < + 0.01298 5.15541 4.94323 1.46634 0.26236 1.25745 0.33460 + 13 1.15433 2.07275 1.97118 0.86845 15 u = - < 1.38629 1.38629 1.38629 1.38629 - 0.08647 5.30746 2.55255 1.46634 0.26236 3.10403 0.04591 - 14 0.53170 2.65084 2.80434 1.26849 16 A + - _ + 0.07276 5.15404 2.74259 1.46634 0.26236 1.32251 0.30988 + 14 0.54500 2.52065 2.66430 1.30896 16 A + - _ 1.38629 1.38629 1.38629 1.38629 - 0.18468 5.23174 1.81226 1.46634 0.26236 3.61111 0.02739 - 15 1.35113 2.11374 1.48299 0.93316 17 u + - _ + 0.16689 5.09363 1.91345 1.46634 0.26236 2.63210 0.07464 + 15 1.33809 2.02818 1.48738 0.96728 17 u + - _ 1.38629 1.38629 1.38629 1.38629 - 0.97569 5.05983 0.48334 1.46634 0.26236 4.19811 0.01514 - 16 1.13624 2.01827 1.73784 0.99374 18 u + - _ + 0.88596 4.94113 0.54380 1.46634 0.26236 3.60967 0.02743 + 16 1.12492 2.02630 1.72834 1.00534 18 u + - _ 1.38629 1.38629 1.38629 1.38629 - 0.91056 4.11726 0.54229 1.46634 0.26236 5.09212 0.00616 - 17 1.20628 1.47733 1.88666 1.13673 19 u + - _ + 0.89299 4.08925 0.55544 1.46634 0.26236 4.76378 0.00857 + 17 1.20761 1.47808 1.88936 1.13369 19 u + - _ 1.38629 1.38629 1.38629 1.38629 - 0.28883 3.28457 1.54456 1.46634 0.26236 2.19623 0.11791 - 18 0.85582 1.73623 1.54334 1.68622 20 a + - _ + 0.27918 3.27492 1.58095 1.46634 0.26236 2.48497 0.08701 + 18 0.82945 1.87302 1.53871 1.63275 20 a + - _ 1.38629 1.38629 1.38629 1.38629 - 0.04768 3.76023 3.76023 1.46634 0.26236 4.69766 0.00916 - 19 1.22653 1.78175 1.60637 1.08549 21 u + - _ + 0.06149 3.51262 3.51262 1.46634 0.26236 4.78267 0.00841 + 19 1.07706 1.78365 1.69744 1.17691 21 a + - _ 1.38629 1.38629 1.38629 1.38629 - 0.48181 3.77528 1.02331 1.46634 0.26236 3.53539 0.02958 - 20 1.49128 1.90375 2.17323 0.66924 22 U + - _ + 0.32718 3.51857 1.38869 1.46634 0.26236 4.96387 0.00701 + 20 1.22767 1.75426 1.89322 0.95866 22 u + - _ 1.38629 1.38629 1.38629 1.38629 - 0.36341 1.29254 3.50248 0.20659 1.67852 0.01053 4.55874 - 21 0.77224 2.45287 2.10158 1.10953 24 a + - _ + 0.18208 2.05202 3.27042 0.51327 0.91264 0.01337 4.32122 + 21 0.88235 2.41601 2.04974 0.99928 24 a + - _ 1.38629 1.38629 1.38629 1.38629 - 0.09730 5.39873 2.42824 1.46634 0.26236 1.09861 0.40547 - 22 1.19556 2.07802 1.59507 0.99589 25 u = - > + 0.01458 5.15838 4.74200 1.46634 0.26236 1.09861 0.40547 + 22 1.19968 2.06185 1.53734 1.03131 25 u = - > 1.38629 1.38629 1.38629 1.38629 - 0.00992 5.31135 5.31135 1.46634 0.26236 3.06812 0.04762 - 23 5.04688 0.07940 5.05077 2.75674 26 C = - > + 0.01160 5.15541 5.15541 1.46634 0.26236 1.25745 0.33460 + 23 5.26550 0.07800 5.13743 2.74892 26 C = - > 1.38629 1.38629 1.38629 1.38629 - 0.00992 5.31135 5.31135 1.46634 0.26236 0.87517 0.53921 - 24 0.02701 5.59712 4.12423 4.99685 27 A = - > + 0.01160 5.15541 5.15541 1.46634 0.26236 0.84108 0.56431 + 24 0.01202 6.46732 4.96107 5.68811 27 A = - > 1.38629 1.38629 1.38629 1.38629 - 0.03019 5.34989 3.68946 1.46634 0.26236 2.26120 0.11007 - 25 4.60676 0.79957 4.73345 0.63168 28 U = - > + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 25 4.89593 0.81682 4.85963 0.61077 28 U = - > 1.38629 1.38629 1.38629 1.38629 - 0.00972 5.33144 5.33144 1.46634 0.26236 0.12218 2.16276 - 26 1.08049 3.58492 0.56370 2.75310 29 G + - , + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 26 0.90186 3.69564 0.66111 2.93607 29 G + - , 1.38629 1.38629 1.38629 1.38629 - 0.03772 3.42661 5.39873 0.25830 1.48000 1.09861 0.40547 - 27 2.19749 1.79519 2.11200 0.50779 31 U = - < + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 27 2.06560 1.74532 2.03678 0.56524 31 U = - < 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 28 2.20091 1.00447 2.50369 0.81809 32 u = - < + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 28 2.07592 1.13313 2.32672 0.78763 32 u = - < 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 29 0.95479 3.12366 0.65844 2.92893 33 G = - < + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 29 1.01728 2.99365 0.63016 2.88574 33 G = - < 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 30 0.76003 4.50966 0.67828 4.27911 34 G = - < + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 30 0.77894 4.17732 0.67965 3.96461 34 G = - < 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 31 0.34924 3.60922 1.43793 3.49711 35 A = - < + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 31 0.42439 3.37517 1.30363 3.21694 35 A = - < 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 32 3.28010 2.41145 3.08652 0.18991 36 U + - _ + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 32 3.13233 2.82651 3.75365 0.13498 36 U + - _ 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 33 4.11257 4.37871 5.05226 0.03594 37 U + - _ + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 33 3.89819 4.14820 4.80908 0.04523 37 U + - _ 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 34 4.88431 4.43025 0.02450 5.35514 38 G * - _ + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 34 4.62826 4.24196 0.03079 5.08812 38 G * - _ 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 35 4.91964 0.03279 4.23260 4.56181 39 C * - _ + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 35 4.75510 0.03862 4.08756 4.38268 39 C * - _ 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 36 0.00936 6.04536 5.60010 5.72939 40 A * - _ + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 36 0.01149 5.82583 5.39596 5.53716 40 A * - _ 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 37 0.02559 4.90803 4.65176 4.78729 41 A + - _ + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 37 0.03335 4.63829 4.39363 4.53101 41 A + - _ 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 38 0.18777 4.25111 1.95390 4.18488 42 A + - _ + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 38 0.18074 4.02468 2.05343 3.95349 42 A + - _ 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 39 3.86343 1.39168 3.47663 0.35748 43 U = - > + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 39 3.57188 1.21099 3.19065 0.45752 43 U = - > 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 40 4.49932 0.71909 4.30306 0.71711 44 u = - > + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 40 4.20212 0.72959 3.97487 0.72537 44 u = - > 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 41 3.14974 0.69891 3.01577 0.88916 45 c = - > + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 41 3.13210 0.67888 2.88925 0.93249 45 C = - > 1.38629 1.38629 1.38629 1.38629 - 0.01985 4.19078 5.39873 0.51805 0.90556 1.09861 0.40547 - 42 0.99015 2.70655 0.86592 1.95867 47 g = - > + 0.01235 5.03302 5.15838 1.31545 0.31246 1.09861 0.40547 + 42 0.98759 2.52638 0.94698 1.83467 47 g = - > 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 43 0.67510 2.38170 1.42770 1.84113 48 A = - > + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 43 0.73857 2.29665 1.41207 1.72615 48 a = - > 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 44 0.24952 2.76343 2.82751 2.31680 49 A + - , + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 44 0.22256 3.06517 2.83994 2.35963 49 A + - , 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 45 2.08270 2.80992 0.25952 3.12871 50 G + - , + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 45 2.21210 4.89967 0.13662 4.53035 50 G + - , 1.38629 1.38629 1.38629 1.38629 - 2.40299 5.39873 0.09979 1.46634 0.26236 1.09861 0.40547 + 2.16265 5.15838 0.12871 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 51 g = - < 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 47 1.80275 1.30601 1.07738 1.49713 52 g = - < + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 47 1.80277 1.30601 1.07738 1.49714 52 g = - < 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 48 1.80023 1.30678 1.07832 1.49662 53 g = - < + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 48 1.80027 1.30677 1.07831 1.49663 53 g = - < 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 49 1.79907 1.30714 1.07876 1.49639 54 g = - < + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 49 1.79912 1.30713 1.07874 1.49640 54 g = - < 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 50 1.79858 1.30729 1.07894 1.49629 55 g = - < + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 50 1.79864 1.30727 1.07892 1.49630 55 g = - < 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 51 1.79843 1.30734 1.07900 1.49626 56 g = - < + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 51 1.79849 1.30732 1.07898 1.49627 56 g = - < 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 52 1.79843 1.30734 1.07900 1.49626 57 g = - < + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 52 1.79849 1.30732 1.07897 1.49628 57 g = - < 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 53 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 54 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 55 1.13112 1.65303 1.51838 1.32128 60 a + - _ 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 56 1.13112 1.65303 1.51838 1.32128 61 a + - _ 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 57 1.72973 1.22043 1.16230 1.53806 62 g = - > + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 57 1.72979 1.22041 1.16228 1.53807 62 g = - > 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 58 1.72969 1.22045 1.16231 1.53804 63 g = - > + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 58 1.72975 1.22043 1.16229 1.53806 63 g = - > 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 59 1.72974 1.22043 1.16229 1.53806 64 g = - > + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 59 1.72980 1.22040 1.16227 1.53808 64 g = - > 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 60 1.72997 1.22033 1.16221 1.53813 65 g = - > + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 60 1.73001 1.22031 1.16219 1.53814 65 g = - > 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 61 1.73049 1.22011 1.16202 1.53828 66 g = - > + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 61 1.73052 1.22009 1.16201 1.53829 66 g = - > 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 - 62 1.73153 1.21966 1.16164 1.53859 67 g = - > + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 + 62 1.73155 1.21965 1.16163 1.53859 67 g = - > 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 + 0.09531 3.09104 3.09104 1.46634 0.26236 5.04267 0.00648 63 1.73350 1.21882 1.16092 1.53917 68 g = - > 1.38629 1.38629 1.38629 1.38629 - 0.09531 3.09104 3.09104 1.46634 0.26236 0.00994 4.61574 - 64 0.37530 3.21362 1.81878 2.20293 69 A + - , + 0.09531 3.09104 3.09104 1.46634 0.26236 0.01300 4.34952 + 64 0.34557 3.29960 1.87209 2.28785 69 A + - , 1.38629 1.38629 1.38629 1.38629 - 0.02671 3.82439 5.39873 0.37275 1.16744 1.09861 0.40547 - 65 0.77232 1.65897 2.54896 1.31096 71 a + - , + 0.01224 5.04904 5.15838 1.33370 0.30585 1.09861 0.40547 + 65 0.79827 1.76550 2.37154 1.25367 71 a + - , 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 66 2.80159 5.09897 0.07631 5.01236 72 G = - < + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 66 2.58859 4.74336 0.09824 4.63218 72 G = - < 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 67 2.75696 0.61760 2.12805 1.27938 73 C = - < + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 67 2.62301 0.61236 2.27731 1.26306 73 C = - < 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 68 0.59114 2.42604 1.19934 2.87309 74 A = - < + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 68 0.59035 2.54121 1.19248 2.75466 74 A = - < 1.38629 1.38629 1.38629 1.38629 - 0.03357 4.18497 4.02906 0.51538 0.90949 1.09861 0.40547 - 69 2.07147 1.94252 0.42074 2.60239 76 G = - < + 0.02293 5.01133 4.13456 1.29119 0.32151 1.09861 0.40547 + 69 2.00379 2.00953 0.41305 2.66654 76 G = - < 1.38629 1.38629 1.38629 1.38629 - 0.05904 5.38537 2.94231 1.46634 0.26236 1.78071 0.18455 - 70 1.30012 1.41047 1.24730 1.62866 77 g = - < + 0.03896 5.14807 3.42968 1.46634 0.26236 1.56523 0.23451 + 70 1.21542 1.53002 1.10758 1.85453 77 g = - < 1.38629 1.38629 1.38629 1.38629 - 0.15215 3.14409 2.32247 0.21014 1.66321 0.93778 0.49675 - 71 2.30420 1.10926 2.47731 0.72074 79 u + - _ + 0.09125 4.79813 2.53878 1.11127 0.39920 0.56315 0.84260 + 71 2.21145 1.18891 2.46297 0.69170 79 U + - _ 1.38629 1.38629 1.38629 1.38629 - 0.02937 3.90897 4.72379 0.45334 1.00924 0.20961 1.66547 - 72 2.66482 2.60509 2.43806 0.26245 81 U + - _ + 0.01872 4.56776 4.80823 0.95203 0.48769 0.21836 1.62881 + 72 3.02010 3.16972 2.89057 0.15824 81 U + - _ 1.38629 1.38629 1.38629 1.38629 - 0.02546 5.37834 3.88633 1.46634 0.26236 1.12779 0.39119 - 73 0.75202 1.58350 2.00636 1.66679 82 a + - _ + 0.03241 5.14862 3.64658 1.46634 0.26236 1.14133 0.38477 + 73 0.68822 1.57015 2.12873 1.76887 82 A + - _ 1.38629 1.38629 1.38629 1.38629 - 0.01254 5.36892 4.85327 1.46634 0.26236 0.76800 0.62351 - 74 0.37557 3.37646 1.49382 2.91096 83 A + - _ + 0.01304 5.13109 4.95518 1.46634 0.26236 0.54976 0.86059 + 74 0.32505 3.35104 1.62878 3.07274 83 A + - _ 1.38629 1.38629 1.38629 1.38629 - 0.02261 4.09200 5.17532 0.48179 0.96149 1.50363 0.25144 - 75 0.85200 1.46181 2.38697 1.38743 85 a + - _ + 0.01555 4.80474 4.92788 1.09038 0.40960 1.49089 0.25512 + 75 0.95850 1.45450 2.24053 1.28513 85 a + - _ 1.38629 1.38629 1.38629 1.38629 - 0.02048 5.38282 4.15526 1.46634 0.26236 1.87009 0.16737 - 76 1.24292 1.65338 1.71796 1.07696 86 u + - _ + 0.02439 5.14862 4.00152 1.46634 0.26236 1.54540 0.23982 + 76 1.20223 1.63649 1.62375 1.17877 86 u + - _ 1.38629 1.38629 1.38629 1.38629 - 0.56630 3.09643 0.94889 0.45518 1.00604 2.08266 0.13307 - 77 1.59981 1.53752 1.46227 1.04571 89 u + - _ + 0.59201 3.75849 0.85929 0.61830 0.77405 1.82021 0.17673 + 77 1.60887 1.52687 1.30699 1.16463 89 u + - _ 1.38629 1.38629 1.38629 1.38629 - 0.29605 2.55010 1.72498 0.61123 0.78237 0.11126 2.25098 - 78 2.08357 1.04528 1.58342 1.14367 93 c = - > + 0.19021 4.06007 1.85810 1.01227 0.45160 0.11075 2.25536 + 78 2.28298 0.90822 1.78287 1.11895 93 c = - > 1.38629 1.38629 1.38629 1.38629 - 0.01054 5.25139 5.25139 1.46634 0.26236 0.17263 1.84165 - 79 2.90310 0.47087 1.83262 1.82825 94 C = - > + 0.01313 5.03220 5.03220 1.46634 0.26236 0.19268 1.74153 + 79 3.05780 0.46865 1.87368 1.75098 94 C = - > 1.38629 1.38629 1.38629 1.38629 - 0.00922 5.38379 5.38379 1.46634 0.26236 0.38351 1.14402 - 80 3.05974 1.31279 2.35175 0.52962 95 U = - > + 0.01171 5.14601 5.14601 1.46634 0.26236 0.49305 0.94357 + 80 2.94823 1.33238 2.44217 0.51626 95 U = - > 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 81 1.72033 2.22333 0.45931 2.51303 96 G = - > + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 81 1.78835 2.40438 0.43142 2.37668 96 G = - > 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 82 4.40499 0.09677 4.94885 2.61829 97 C = - > + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 82 4.15115 0.12722 4.58250 2.36997 97 C = - > 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 83 5.37737 0.09242 5.27135 2.54439 98 C = - ) + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 83 5.24248 0.08141 5.12401 2.70394 98 C = - ) 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 84 1.74640 2.29280 0.49522 2.16129 99 G = - ) + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 84 1.78304 2.34162 0.47269 2.18585 99 G = - ) 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 85 1.90463 2.86487 0.36824 2.28099 100 G = - ) + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 85 1.99001 2.80724 0.32937 2.48226 100 G = - ) 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 86 2.28325 4.37927 0.14527 3.87664 101 G = - ) + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 86 2.11321 3.90863 0.18776 3.49764 101 G = - ) 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 87 2.04475 3.38959 0.22498 3.26138 102 G = - ) + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 87 1.97544 3.10854 0.26694 2.97767 102 G = - ) 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 88 3.51930 0.29685 2.80645 1.79091 103 C = - ) + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 88 3.50481 0.29464 3.02204 1.73473 103 C = - ) 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 89 5.17621 1.74578 5.14404 0.20579 104 U = - ) + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 89 5.00348 1.90968 4.97339 0.17645 104 U = - ) 1.38629 1.38629 1.38629 1.38629 - 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 - 90 4.86102 4.10153 5.39280 0.02926 105 U + - : + 0.01157 5.15838 5.15838 1.46634 0.26236 1.09861 0.40547 + 90 4.59398 3.88333 5.11999 0.03736 105 U + - : 1.38629 1.38629 1.38629 1.38629 - 0.00455 5.39419 * 1.46634 0.26236 0.00000 * + 0.00580 5.15261 * 1.46634 0.26236 0.00000 * // diff -Nru trnascan-se-2.0.9+ds/lib/models/TRNAinf-mito-vert-Cys-no-darm.cm trnascan-se-2.0.10+ds/lib/models/TRNAinf-mito-vert-Cys-no-darm.cm --- trnascan-se-2.0.9+ds/lib/models/TRNAinf-mito-vert-Cys-no-darm.cm 1970-01-01 00:00:00.000000000 +0000 +++ trnascan-se-2.0.10+ds/lib/models/TRNAinf-mito-vert-Cys-no-darm.cm 2022-09-05 22:35:32.000000000 +0000 @@ -0,0 +1,553 @@ +INFERNAL1/a [1.1.4 | Dec 2020] +NAME mito-vert-Cys-no-darm +STATES 227 +NODES 57 +CLEN 71 +W 150 +ALPH RNA +RF yes +CONS yes +MAP yes +DATE Mon Sep 5 15:34:06 2022 +COM [1] cmbuild --hand --enone TRNAinf-mito-vert-Cys-no-darm.cm ../../alignments/vertebrate/mito-vert-Cys-no-darm.sto +COM [2] cmcalibrate --seed 208 TRNAinf-mito-vert-Cys-no-darm.cm +PBEGIN 0.05 +PEND 0.05 +WBETA 1e-07 +QDBBETA1 1e-07 +QDBBETA2 1e-15 +N2OMEGA 1.52588e-05 +N3OMEGA 1.52588e-05 +ELSELF -0.08926734 +NSEQ 58 +EFFN 58.000000 +CKSUM 4249004808 +NULL 0.000 0.000 0.000 0.000 +EFP7GF -11.7066 0.72874 +ECMLC 0.66872 -6.12029 2.75189 1600000 452751 0.002650 +ECMGC 0.42305 -18.18006 -5.93749 1600000 71017 0.005632 +ECMLI 0.60256 -6.11120 3.60790 1600000 419316 0.002862 +ECMGI 0.44035 -15.39476 -3.82828 1600000 65170 0.006138 +CM + [ ROOT 0 ] - - - - - - + S 0 -1 0 1 4 0 1 150 259 -10.830 -12.076 -0.005 -8.529 + IL 1 1 2 1 4 3 21 151 260 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 + IR 2 2 3 2 3 4 22 152 261 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 1 ] - 84 - U - + + MR 3 2 3 5 5 6 27 150 259 -10.891 -0.003 -10.706 -10.918 -11.810 -8.157 -7.312 -9.204 1.996 + D 4 2 3 5 5 2 17 148 257 -5.352 -0.707 -2.978 -4.409 -2.404 + IR 5 5 3 5 5 3 21 150 259 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 2 ] 1 83 a u = = + MP 6 5 3 10 6 7 26 149 258 -11.930 -11.870 -0.003 -10.646 -10.926 -11.321 -7.834 -6.493 -8.024 2.805 -10.137 -11.170 -5.579 -8.075 -7.594 1.916 -8.259 2.363 -5.519 -9.283 -7.418 -6.628 + ML 7 5 3 10 6 3 19 147 256 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 8 5 3 10 6 3 19 147 256 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 9 5 3 10 6 2 15 142 251 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 10 10 5 10 6 3 20 148 257 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 11 11 6 11 5 3 20 148 257 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 3 ] 2 82 G C = = + MP 12 11 6 16 6 7 25 147 256 -11.930 -11.870 -0.003 -10.646 -10.926 -11.321 -6.247 -1.342 -6.085 0.955 -7.225 -6.628 0.365 -6.754 -6.439 3.474 -6.696 -0.110 -2.552 -5.926 -4.299 -5.042 + ML 13 11 6 16 6 3 19 145 254 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 14 11 6 16 6 3 18 145 254 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 15 11 6 16 6 2 15 141 250 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 16 16 5 16 6 3 20 147 255 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 17 17 6 17 5 3 20 146 255 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 4 ] 3 81 C G = = + MP 18 17 6 22 6 6 23 145 254 -11.930 -11.870 -0.003 -10.646 -10.926 -11.321 -8.657 -8.829 -8.063 -4.965 -2.217 -8.267 3.488 -7.354 -8.139 -4.877 -1.524 -7.003 1.767 -8.541 -0.505 -6.930 + ML 19 17 6 22 6 3 18 143 252 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 20 17 6 22 6 3 18 143 252 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 21 17 6 22 6 2 15 139 248 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 22 22 5 22 6 3 19 145 253 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 23 23 6 23 5 3 19 144 253 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 5 ] 4 80 C G = = + MP 24 23 6 28 6 4 21 143 252 -11.930 -11.870 -0.027 -10.646 -10.926 -5.868 -8.846 -9.119 -8.170 -5.346 -6.524 -8.319 3.511 -7.438 -8.272 -5.312 -8.395 -7.501 1.004 -8.684 1.318 -7.073 + ML 25 23 6 28 6 3 18 141 250 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 26 23 6 28 6 3 17 140 249 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 27 23 6 28 6 2 15 138 247 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 28 28 5 28 6 3 19 143 252 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 29 29 6 29 5 3 19 142 251 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 6 ] 5 79 C G = = + MP 30 29 6 34 6 6 20 141 250 -11.906 -11.845 -0.003 -10.622 -10.902 -11.297 -8.294 -8.327 -7.832 -4.356 -6.307 -8.137 3.311 -7.163 -7.864 -4.211 -8.094 -0.959 1.899 -8.250 0.744 -6.640 + ML 31 29 6 34 6 3 16 139 248 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 32 29 6 34 6 3 16 138 247 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 33 29 6 34 6 2 15 138 247 -10.636 -9.334 -0.524 -5.813 -5.831 -1.906 + IL 34 34 5 34 6 3 17 140 249 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 35 35 6 35 5 3 17 140 249 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 7 ] 6 78 a u = = + MP 36 35 6 40 6 5 19 139 248 -11.930 -11.870 -0.040 -5.255 -10.926 -11.321 -4.869 -4.918 -5.008 2.276 -2.016 -5.857 2.168 -5.046 -5.007 0.362 -5.560 -0.751 1.360 -5.162 0.108 -0.586 + ML 37 35 6 40 6 3 16 136 245 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 38 35 6 40 6 3 15 135 244 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 39 35 6 40 6 2 13 131 240 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 40 40 5 40 6 3 17 138 247 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 41 41 6 41 5 3 17 138 247 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 8 ] 7 77 G C = = + MP 42 41 6 46 3 4 17 138 247 -0.012 -20.184 -6.879 -0.646 -1.737 -0.442 0.741 -6.920 -6.389 0.003 -6.476 -6.223 3.385 -0.685 -2.246 -2.254 -5.647 -3.996 -4.754 + ML 43 41 6 46 3 3 14 133 242 -0.807 -2.223 -2.223 -1.299 -1.328 -2.022 1.560 + MR 44 41 6 46 3 3 14 130 239 -1.585 -1.585 -1.585 0.368 -0.385 -0.191 0.094 + D 45 41 6 46 3 2 13 129 238 -1.585 -1.585 -1.585 + IL 46 46 5 46 3 3 15 136 245 -0.244 -12.520 -2.686 0.000 0.000 0.000 0.000 + IR 47 47 6 47 2 3 13 69 88 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ BIF 9 ] - - - - - - + B 48 47 6 109 49 2 12 67 86 + [ BEGR 41 ] - - - - - - + S 49 48 1 50 3 0 1 30 48 -11.945 -0.001 -10.599 + IL 50 50 2 50 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 42 ] 56 - a - + - + ML 51 50 2 53 3 1 2 30 48 -4.524 -0.065 -10.599 0.782 -1.374 -1.177 0.538 + D 52 50 2 53 3 0 0 28 47 -6.174 -1.687 -0.566 + IL 53 53 3 53 3 1 1 30 48 -2.811 -0.259 -5.511 0.000 0.000 0.000 0.000 + [ MATL 43 ] 58 - a - + - + ML 54 53 3 56 5 1 1 29 47 -10.891 -0.028 -10.706 -5.788 -11.810 0.981 -0.382 -2.408 0.098 + D 55 53 3 56 5 0 0 27 46 -4.959 -0.803 -4.221 -2.596 -2.508 + IL 56 56 3 56 5 1 1 29 48 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 + [ MATP 44 ] 59 76 G C = = + MP 57 56 3 61 6 2 2 28 46 -11.907 -11.846 -0.003 -10.623 -10.902 -11.297 -8.708 -2.094 -9.129 -0.381 -9.895 -1.571 -4.681 -9.618 -7.600 3.825 -7.804 -4.021 -1.506 -7.619 -6.863 -8.109 + ML 58 56 3 61 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 59 56 3 61 6 1 1 26 45 -8.208 -6.937 -0.494 -6.915 -2.049 -5.129 1.498 -1.639 -1.343 -1.118 + D 60 56 3 61 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 61 61 5 61 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 62 62 6 62 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 45 ] 60 75 g c = = + MP 63 62 6 67 6 2 2 26 44 -11.930 -11.870 -0.003 -10.646 -10.926 -11.321 -6.645 -5.283 -6.535 1.721 -7.693 -7.302 2.213 -7.076 -6.765 2.891 -7.109 -1.409 -3.065 -6.532 -4.812 -5.431 + ML 64 62 6 67 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 65 62 6 67 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 66 62 6 67 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 67 67 5 67 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 68 68 6 68 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 46 ] 61 74 c g = = + MP 69 68 6 73 6 2 2 24 42 -11.930 -11.870 -0.234 -10.646 -10.926 -2.755 -4.574 -4.626 -4.724 2.060 -4.415 -2.193 2.167 -1.151 -4.754 1.541 -5.306 -0.723 1.114 -4.866 -0.607 -3.814 + ML 70 68 6 73 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 71 68 6 73 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 72 68 6 73 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 73 73 5 73 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 74 74 6 74 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 47 ] 62 73 g c = = + MP 75 74 6 79 6 2 2 22 40 -11.700 -11.639 -0.340 -10.416 -10.695 -2.264 -5.839 -5.197 -5.806 1.347 -5.173 -6.570 1.839 -5.668 -5.839 2.410 -6.291 -1.355 0.960 -5.877 1.013 -4.549 + ML 76 74 6 79 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 77 74 6 79 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 78 74 6 79 6 0 0 19 37 -13.274 -11.972 -7.769 -8.451 -8.469 -0.015 + IL 79 79 5 79 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 80 80 6 80 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 48 ] 63 72 c g = = + MP 81 80 6 85 4 2 2 20 38 -10.394 -10.601 -0.634 -1.498 -4.013 -4.115 -4.171 0.450 -0.222 -5.021 2.239 0.584 -4.192 1.295 -4.751 -2.434 0.785 -4.321 0.343 0.658 + ML 82 80 6 85 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 83 80 6 85 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 84 80 6 85 4 0 0 18 37 -9.792 -9.473 -7.489 -0.012 + IL 85 85 5 85 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 86 86 6 86 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 49 ] 64 - U - + - + ML 87 86 6 89 3 1 1 17 35 -10.693 -0.003 -9.347 -1.550 -0.227 -2.024 1.355 + D 88 86 6 89 3 0 0 16 34 -12.595 -0.181 -3.083 + IL 89 89 3 89 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 50 ] 65 - g - + - + ML 90 89 3 92 3 1 1 16 34 -11.848 -0.001 -10.502 -0.142 -2.154 0.895 0.015 + D 91 89 3 92 3 0 0 15 34 -9.558 -0.099 -3.949 + IL 92 92 3 92 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 51 ] 66 - u - + - + ML 93 92 3 95 3 1 1 14 33 -11.945 -0.001 -10.599 0.267 -0.471 -1.059 0.674 + D 94 92 3 95 3 0 0 16 35 -6.174 -1.687 -0.566 + IL 95 95 3 95 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 52 ] 67 - a - + - + ML 96 95 3 98 3 1 1 13 31 -11.945 -0.001 -10.599 0.740 -1.890 -0.257 0.291 + D 97 95 3 98 3 0 0 15 34 -6.174 -1.687 -0.566 + IL 98 98 3 98 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 53 ] 68 - A - + - + ML 99 98 3 101 3 1 1 12 30 -11.945 -0.001 -10.599 1.193 -2.590 -1.021 0.077 + D 100 98 3 101 3 0 0 14 33 -6.174 -1.687 -0.566 + IL 101 101 3 101 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 54 ] 69 - a - + - + ML 102 101 3 104 3 1 1 10 22 -5.400 -0.869 -1.222 0.648 -0.801 -0.796 0.361 + D 103 101 3 104 3 0 0 9 20 -6.174 -1.687 -0.566 + IL 104 104 3 104 3 1 1 11 23 -2.336 -0.374 -5.036 0.000 0.000 0.000 0.000 + [ MATL 55 ] 71 - a - + - + ML 105 104 3 107 2 1 1 1 1 * 0.000 0.216 0.025 -0.544 0.183 + D 106 104 3 107 2 0 0 0 0 * 0.000 + IL 107 107 3 107 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ END 56 ] - - - - - - + E 108 107 3 -1 0 0 0 0 0 + [ BEGL 10 ] - - - - - - + S 109 48 1 110 1 0 2 48 67 0.000 + [ BIF 11 ] - - - - - - + B 110 109 1 111 164 0 2 48 67 + [ BEGL 12 ] - - - - - - + S 111 110 1 112 4 0 0 28 46 -0.005 -10.010 -9.418 -10.058 + [ MATP 13 ] 19 35 c g = = + MP 112 111 1 116 6 2 2 28 46 -11.930 -11.870 -0.003 -10.646 -10.926 -11.321 -5.008 -5.042 -5.139 -1.513 -4.633 -2.040 2.823 -5.144 -1.094 -1.426 -5.680 -1.107 1.975 -0.623 0.771 -0.832 + ML 113 111 1 116 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 114 111 1 116 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 115 111 1 116 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 116 116 5 116 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 117 117 6 117 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 14 ] 20 34 C G = = + MP 118 117 6 122 6 2 2 26 44 -11.930 -11.870 -0.033 -5.560 -10.926 -11.321 -8.036 -7.984 -7.671 -0.279 -6.209 -8.060 3.126 -7.034 -7.669 -3.780 -7.953 -5.814 2.375 -8.043 0.144 -6.434 + ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 120 117 6 122 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 121 117 6 122 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 122 122 5 122 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 123 123 6 123 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 15 ] 21 33 A U = = + MP 124 123 6 128 6 2 2 24 42 -11.900 -11.840 -0.003 -10.616 -10.896 -11.291 -6.984 -1.312 -6.939 3.216 -8.333 -8.008 -3.468 -7.380 -7.021 2.302 -7.454 -1.316 -0.332 -7.134 -5.447 -5.772 + ML 125 123 6 128 6 1 1 24 42 -7.803 -8.149 -0.328 -2.558 -7.999 -5.529 1.591 -1.891 -1.571 -1.389 + MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 128 128 5 128 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 129 129 6 129 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 16 ] 22 32 A U = = + MP 130 129 6 134 6 2 2 22 40 -11.930 -11.870 -0.003 -10.646 -10.926 -11.321 -7.340 -5.982 -7.366 3.163 -8.910 -8.741 -0.888 -7.685 -7.276 2.597 -7.784 -1.636 -4.268 -7.775 -6.059 -6.132 + ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 134 134 5 134 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 135 135 6 135 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 17 ] 23 31 A U = = + MP 136 135 6 140 4 2 2 20 38 -11.029 -11.236 -0.003 -9.650 -7.845 -0.748 -8.039 3.684 -10.175 -11.310 -5.631 -8.083 -7.601 1.134 -8.270 -1.876 -5.558 -9.337 -7.463 -6.638 + ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 + IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 18 ] 24 - u - + - + ML 142 141 6 144 3 1 1 17 36 -11.945 -0.001 -10.599 -3.867 0.452 0.122 0.561 + D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 + IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 19 ] 25 - U - + - + ML 145 144 3 147 3 1 1 16 34 -11.945 -0.001 -10.599 -8.157 -7.312 -9.204 1.996 + D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 + IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 20 ] 26 - G - * - + ML 148 147 3 150 3 1 1 15 33 -11.945 -0.001 -10.599 -6.571 -8.337 1.993 -7.332 + D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 + IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 21 ] 27 - C - * - + ML 151 150 3 153 3 1 1 13 32 -11.945 -0.001 -10.599 -7.449 1.992 -7.921 -6.474 + D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 + IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 22 ] 28 - A - * - + ML 154 153 3 156 3 1 1 12 30 -11.945 -0.001 -10.599 1.994 -8.070 -7.339 -7.474 + D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 + IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 23 ] 29 - A - + - + ML 157 156 3 159 3 1 1 10 29 -11.945 -0.001 -10.599 1.994 -8.070 -7.339 -7.474 + D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 + IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 24 ] 30 - A - + - + ML 160 159 3 162 2 1 1 1 1 * 0.000 1.786 -6.520 -0.921 -6.413 + D 161 159 3 162 2 0 0 0 0 * 0.000 + IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ END 25 ] - - - - - - + E 163 162 3 -1 0 0 0 0 0 + [ BEGR 26 ] - - - - - - + S 164 110 1 165 3 0 0 31 50 -11.945 -0.001 -10.599 + IL 165 165 2 165 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 27 ] 36 - a - + - + ML 166 165 2 168 3 1 1 31 50 -11.945 -0.001 -10.599 0.694 -0.043 -0.872 -0.209 + D 167 165 2 168 3 0 0 32 51 -6.174 -1.687 -0.566 + IL 168 168 3 168 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 28 ] 37 - u - + - + ML 169 168 3 171 5 1 1 30 49 -10.891 -4.715 -10.706 -10.918 -0.058 -0.754 -0.074 0.021 0.528 + D 170 168 3 171 5 0 0 32 51 -4.959 -0.803 -4.221 -2.596 -2.508 + IL 171 171 3 171 5 1 1 34 53 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 + [ MATP 29 ] 38 55 g c = = + MP 172 171 3 176 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 + ML 173 171 3 176 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 174 171 3 176 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 175 171 3 176 6 0 0 24 43 -15.796 -14.494 -10.291 -10.973 -10.991 -0.003 + IL 176 176 5 176 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 177 177 6 177 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 30 ] 39 54 g c = = + MP 178 177 6 182 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 + ML 179 177 6 182 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 180 177 6 182 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 181 177 6 182 6 0 0 22 41 -15.796 -14.494 -10.291 -10.973 -10.991 -0.003 + IL 182 182 5 182 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 183 183 6 183 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 31 ] 40 53 g c = = + MP 184 183 6 188 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 + ML 185 183 6 188 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 186 183 6 188 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 187 183 6 188 6 0 0 20 39 -15.796 -14.494 -10.291 -10.973 -10.991 -0.003 + IL 188 188 5 188 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 189 189 6 189 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 32 ] 41 52 g c = = + MP 190 189 6 194 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 + ML 191 189 6 194 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 192 189 6 194 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 193 189 6 194 6 0 0 18 37 -15.796 -14.494 -10.291 -10.973 -10.991 -0.003 + IL 194 194 5 194 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 195 195 6 195 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 33 ] 42 51 g c = = + MP 196 195 6 200 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 + ML 197 195 6 200 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 198 195 6 200 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 199 195 6 200 6 0 0 16 35 -15.796 -14.494 -10.291 -10.973 -10.991 -0.003 + IL 200 200 5 200 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 201 201 6 201 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 34 ] 43 50 g c = = + MP 202 201 6 206 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 + ML 203 201 6 206 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 204 201 6 206 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 205 201 6 206 6 0 0 15 34 -15.796 -14.494 -10.291 -10.973 -10.991 -0.003 + IL 206 206 5 206 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 207 207 6 207 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 35 ] 44 49 g c = = + MP 208 207 6 212 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 + ML 209 207 6 212 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 210 207 6 212 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 211 207 6 212 4 0 0 14 33 -11.219 -10.900 -8.916 -0.004 + IL 212 212 5 212 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 213 213 6 213 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 36 ] 45 - a - + - + ML 214 213 6 216 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 + D 215 213 6 216 3 0 0 11 30 -13.328 -8.841 -0.003 + IL 216 216 3 216 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 37 ] 46 - a - + - + ML 217 216 3 219 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 + D 218 216 3 219 3 0 0 10 28 -13.328 -8.841 -0.003 + IL 219 219 3 219 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 38 ] 47 - a - + - + ML 220 219 3 222 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 + D 221 219 3 222 3 0 0 8 27 -13.328 -8.841 -0.003 + IL 222 222 3 222 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 39 ] 48 - a - + - + ML 223 222 3 225 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 + D 224 222 3 225 2 0 0 0 0 * 0.000 + IL 225 225 3 225 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ END 40 ] - - - - - - + E 226 225 3 -1 0 0 0 0 0 +// +HMMER3/f [3.3.2 | Nov 2020] +NAME mito-vert-Cys-no-darm +LENG 71 +MAXL 156 +ALPH RNA +RF yes +MM no +CONS yes +CS yes +MAP yes +DATE Mon Sep 5 15:34:06 2022 +COM [1] cmbuild --hand --enone TRNAinf-mito-vert-Cys-no-darm.cm ../../alignments/vertebrate/mito-vert-Cys-no-darm.sto +NSEQ 58 +EFFN 50.781860 +CKSUM 4249004808 +STATS LOCAL MSV -8.8144 0.72874 +STATS LOCAL VITERBI -9.2756 0.72874 +STATS LOCAL FORWARD -3.4588 0.72874 +HMM A C G U + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.41648 1.42706 1.32661 1.37815 + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 0.00000 * + 1 0.82632 6.17533 0.58493 5.76979 1 G = - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 2 1.90237 2.49178 0.28962 3.93877 2 G = - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 3 5.62842 0.33840 3.66979 1.35473 3 C = - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 4 5.87648 0.33945 5.81129 1.26572 4 C = - ( + 1.38629 1.38629 1.38629 1.38629 + 0.02170 6.40026 3.92186 1.46634 0.26236 1.09861 0.40547 + 5 5.22687 0.48027 3.28358 1.08318 5 C = - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00339 6.38195 6.38195 1.46634 0.26236 0.15508 1.94033 + 6 1.18519 1.20926 2.09080 1.30083 6 a = - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 7 1.57712 2.70723 0.37826 3.17829 7 G = - ( + 1.38629 1.38629 1.38629 1.38629 + 3.40453 0.03551 6.40026 1.86497 0.16830 1.09861 0.40547 + 8 3.37099 0.78924 2.43306 0.85876 19 c = - < + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 9 2.92940 0.60713 4.80028 0.93285 20 C = - < + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 10 0.50554 4.66112 1.10119 2.90240 21 A = - < + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 11 0.58575 3.33028 0.91709 4.84727 22 A = - < + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 12 0.17693 6.02176 1.85716 5.62025 23 A = - < + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 13 3.89606 1.07449 1.30948 0.99901 24 u + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 14 6.82618 6.27516 7.52867 0.00351 25 U + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 15 5.82173 7.04258 0.00560 6.34850 26 G * - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 16 6.39835 0.00612 6.72087 5.73507 27 C * - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 17 0.00438 6.85482 6.35451 6.45087 28 A * - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 18 0.00438 6.85482 6.35451 6.45087 29 A + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 19 0.14946 5.75171 2.02318 5.67839 30 A + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 20 5.86922 1.74276 5.90199 0.19918 31 U = - > + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 21 5.17714 0.96711 3.30815 0.54889 32 U = - > + 1.38629 1.38629 1.38629 1.38629 + 0.02596 6.40026 3.73100 1.46634 0.26236 1.09861 0.40547 + 22 2.95859 1.08963 4.58771 0.50818 33 U = - > + 1.38629 1.38629 1.38629 1.38629 + 0.00340 6.37770 6.37770 1.46634 0.26236 0.12981 2.10592 + 23 1.12419 4.96112 0.48977 2.89477 34 G = - > + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 24 1.27887 2.46703 0.61072 2.36604 35 G = - > + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 25 0.90953 1.41978 1.98417 1.52315 36 a + - , + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 26 1.89054 1.44014 1.37648 1.02262 37 u + - , + 1.38629 1.38629 1.38629 1.38629 + 3.40453 6.40026 0.03551 1.46634 0.26236 1.09861 0.40547 + 27 1.80313 1.30589 1.07724 1.49721 38 g = - < + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 28 1.79489 1.30843 1.08033 1.49555 39 g = - < + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 29 1.79119 1.30958 1.08172 1.49480 40 g = - < + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 30 1.78969 1.31004 1.08229 1.49450 41 g = - < + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 31 1.78927 1.31018 1.08245 1.49441 42 g = - < + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 32 1.78935 1.31015 1.08242 1.49443 43 g = - < + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 33 1.78966 1.31005 1.08230 1.49449 44 g = - < + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 34 1.13112 1.65303 1.51838 1.32128 45 a + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 35 1.13112 1.65303 1.51838 1.32128 46 a + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 36 1.13112 1.65303 1.51838 1.32128 47 a + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 37 1.13112 1.65303 1.51838 1.32128 48 a + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 38 1.72146 1.22400 1.16534 1.53561 49 g = - > + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 39 1.72127 1.22408 1.16541 1.53555 50 g = - > + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 40 1.72136 1.22404 1.16537 1.53558 51 g = - > + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 41 1.72199 1.22377 1.16514 1.53577 52 g = - > + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 42 1.72365 1.22305 1.16453 1.53626 53 g = - > + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 43 1.72720 1.22152 1.16323 1.53731 54 g = - > + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 6.36819 0.00172 + 44 1.73422 1.21851 1.16066 1.53938 55 g = - > + 1.38629 1.38629 1.38629 1.38629 + 0.09531 3.09104 3.09104 1.46634 0.26236 0.00344 5.67504 + 45 0.84889 2.32069 2.18981 1.01620 56 a + - , + 1.38629 1.38629 1.38629 1.38629 + 0.04739 3.10949 6.40026 0.07286 2.65548 1.09861 0.40547 + 46 0.71190 1.65083 3.00938 1.31649 58 a + - , + 1.38629 1.38629 1.38629 1.38629 + 0.02119 6.40026 3.94745 1.46634 0.26236 1.09861 0.40547 + 47 2.75132 3.72256 0.11859 3.73744 59 G = - < + 1.38629 1.38629 1.38629 1.38629 + 0.00339 6.38246 6.38246 1.46634 0.26236 0.15880 1.91846 + 48 1.56463 1.24799 0.71498 4.23008 60 g = - < + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 49 1.32277 1.13043 1.49656 1.67766 61 c = - < + 1.38629 1.38629 1.38629 1.38629 + 0.17859 6.40026 1.82086 1.46634 0.26236 1.09861 0.40547 + 50 1.81146 1.47790 1.03075 1.37941 62 g = - < + 1.38629 1.38629 1.38629 1.38629 + 0.26488 6.22564 1.46654 1.46634 0.26236 4.59971 0.01011 + 51 2.27846 0.83282 1.75317 1.23955 63 c = - < + 1.38629 1.38629 1.38629 1.38629 + 0.43344 5.96590 1.05222 1.46634 0.26236 5.37108 0.00466 + 52 2.41695 1.54494 2.75892 0.45551 64 U + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00788 5.54034 5.54034 1.46634 0.26236 0.12354 2.15230 + 53 1.48123 2.84454 0.77256 1.37574 65 g + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00356 6.33381 6.33381 1.46634 0.26236 0.04915 3.03743 + 54 1.20129 1.71092 2.11021 0.92311 66 u + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 55 0.87779 2.66326 1.56646 1.18484 67 a + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 56 0.56501 3.12760 2.08742 1.33251 68 A + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 57 0.94134 1.93552 1.93274 1.13695 69 a + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.60222 3.69079 0.84992 0.12821 2.11754 1.09861 0.40547 + 58 1.23539 1.37547 1.76125 1.25622 71 a + - _ + 1.38629 1.38629 1.38629 1.38629 + 0.34297 5.84550 1.24671 1.46634 0.26236 0.59110 0.80681 + 59 1.75589 1.81179 0.97710 1.24659 72 g = - > + 1.38629 1.38629 1.38629 1.38629 + 0.00514 5.96590 5.96590 1.46634 0.26236 0.61199 0.78148 + 60 2.05377 1.09904 1.04936 1.66920 73 g = - > + 1.38629 1.38629 1.38629 1.38629 + 0.00396 6.22564 6.22564 1.46634 0.26236 0.02031 3.90656 + 61 1.91771 1.60901 1.12480 1.11396 74 u = - > + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 62 4.38316 0.76495 1.23976 1.45798 75 c = - > + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 63 3.35256 0.10124 5.08293 2.89884 76 C = - > + 1.38629 1.38629 1.38629 1.38629 + 0.03154 6.40026 3.52722 1.46634 0.26236 1.09861 0.40547 + 64 2.88536 0.40277 1.89066 2.08164 77 C = - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00342 6.37214 6.37214 1.46634 0.26236 0.10711 2.28700 + 65 1.70264 2.42900 1.04779 0.97032 78 u = - ) + 1.38629 1.38629 1.38629 1.38629 + 0.02170 6.40026 3.92186 1.46634 0.26236 1.09861 0.40547 + 66 1.44916 5.19661 0.32584 3.27616 79 G = - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00339 6.38195 6.38195 1.46634 0.26236 0.15508 1.94033 + 67 2.06206 5.94671 0.14306 5.65699 80 G = - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 68 1.48334 5.64686 0.26777 5.40078 81 G = - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 69 4.21640 0.33531 2.45021 1.69361 82 C = - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 70 5.96470 1.43999 5.94813 0.27722 83 U = - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00333 6.40026 6.40026 1.46634 0.26236 1.09861 0.40547 + 71 6.82618 6.27516 7.52867 0.00351 84 U + - : + 1.38629 1.38629 1.38629 1.38629 + 0.00167 6.39860 * 1.46634 0.26236 0.00000 * +// Binary files /tmp/tmp47o72ylg/e0dM65ZhJv/trnascan-se-2.0.9+ds/lib/models/TRNAinf-mito-vert.i1f and /tmp/tmp47o72ylg/uNm_LWLHfA/trnascan-se-2.0.10+ds/lib/models/TRNAinf-mito-vert.i1f differ Binary files /tmp/tmp47o72ylg/e0dM65ZhJv/trnascan-se-2.0.9+ds/lib/models/TRNAinf-mito-vert.i1i and /tmp/tmp47o72ylg/uNm_LWLHfA/trnascan-se-2.0.10+ds/lib/models/TRNAinf-mito-vert.i1i differ Binary files /tmp/tmp47o72ylg/e0dM65ZhJv/trnascan-se-2.0.9+ds/lib/models/TRNAinf-mito-vert.i1m and /tmp/tmp47o72ylg/uNm_LWLHfA/trnascan-se-2.0.10+ds/lib/models/TRNAinf-mito-vert.i1m differ Binary files /tmp/tmp47o72ylg/e0dM65ZhJv/trnascan-se-2.0.9+ds/lib/models/TRNAinf-mito-vert.i1p and /tmp/tmp47o72ylg/uNm_LWLHfA/trnascan-se-2.0.10+ds/lib/models/TRNAinf-mito-vert.i1p differ diff -Nru trnascan-se-2.0.9+ds/lib/tRNAscanSE/CM.pm trnascan-se-2.0.10+ds/lib/tRNAscanSE/CM.pm --- trnascan-se-2.0.9+ds/lib/tRNAscanSE/CM.pm 2021-07-12 22:31:31.000000000 +0000 +++ trnascan-se-2.0.10+ds/lib/tRNAscanSE/CM.pm 2022-09-11 04:04:01.000000000 +0000 @@ -814,7 +814,7 @@ # looking for second stem-loop structure ">>>>...<<<<" # that should be the anitocodon stem-loop - if ($model eq "SerGCT" and $ss =~ /^([>.]+)>([.]{4,})<+.+[>.]+<[<.]+/o) + if (($model eq "SerGCT" or $model eq "Cys_NoDarm") and $ss =~ /^([>.]+)>([.]{4,})<+.+[>.]+<[<.]+/o) { # set to index position of first base in anticodon loop $antiloop_index = length($1) + 1; @@ -863,37 +863,25 @@ elsif ((length($antiloop) % 2) == 0) { my $found = 0; - $ac_index = int((length($antiloop) - 3) / 2); - $anticodon = substr($antiloop, $ac_index, 3); - my $isotype = $gc->get_tRNA_type($self, $anticodon, $self->{main_cm_file_path}->{$model}, $model, $self->cove_mode()); - if ($model eq $isotype or ($model eq "SerGCT" and $isotype eq "Ser") or ($model eq "SerTGA" and $isotype eq "Ser") - or ($model eq "LeuTAG" and $isotype eq "Leu") or ($model eq "LeuTAA" and $isotype eq "Leu")) - { - $trna->category("mito_ac_mislocation"); - $found = 1; - } - else + my $j = 0; + for (my $i = int((length($antiloop) - 3) / 2); $i <= (length($antiloop) - 3) and $i >= 0; $i = $i + $j) { - $ac_index = int((length($antiloop) - 3) / 2 + 1); + $ac_index = $i; $anticodon = substr($antiloop, $ac_index, 3); - $isotype = $gc->get_tRNA_type($self, $anticodon, $self->{main_cm_file_path}->{$model}, $model, $self->cove_mode()); + my $isotype = $gc->get_tRNA_type($self, $anticodon, $self->{main_cm_file_path}->{$model}, $model, $self->cove_mode()); if ($model eq $isotype or ($model eq "SerGCT" and $isotype eq "Ser") or ($model eq "SerTGA" and $isotype eq "Ser") - or ($model eq "LeuTAG" and $isotype eq "Leu") or ($model eq "LeuTAA" and $isotype eq "Leu")) + or ($model eq "LeuTAG" and $isotype eq "Leu") or ($model eq "LeuTAA" and $isotype eq "Leu") + or ($model eq "Cys_NoDarm" and $isotype eq "Cys")) { $trna->category("mito_ac_mislocation"); - $found = 1; + $found = 1; + last; } - else + $j = abs($j); + $j++; + if ($j % 2 == 0) { - $ac_index = 2; - $anticodon = substr($antiloop, $ac_index, 3); - $isotype = $gc->get_tRNA_type($self, $anticodon, $self->{main_cm_file_path}->{$model}, $model, $self->cove_mode()); - if ($model eq $isotype or ($model eq "SerGCT" and $isotype eq "Ser") or ($model eq "SerTGA" and $isotype eq "Ser") - or ($model eq "LeuTAG" and $isotype eq "Leu") or ($model eq "LeuTAA" and $isotype eq "Leu")) - { - $trna->category("mito_ac_mislocation"); - $found = 1; - } + $j = $j * -1; } } @@ -913,6 +901,42 @@ $ac_index = (length($antiloop) - 3) / 2; $anticodon = substr($antiloop, $ac_index, 3); $verify_ac = uc(substr($seq, $ac_index + $antiloop_index, 3)); + my $isotype = $gc->get_tRNA_type($self, $anticodon, $self->{main_cm_file_path}->{$model}, $model, $self->cove_mode()); + my $model_iso = $model; + if (length($model) > 3) + { + $model_iso = substr($model, 0, 3); + } + if ($isotype ne $model_iso) + { + $verify_ac = ""; + my $found = 0; + my $j = 1; + for (my $i = (length($antiloop) - 3) / 2 - 1; $i <= (length($antiloop) - 3) and $i >= 0; $i = $i + $j) + { + $ac_index = $i; + $anticodon = substr($antiloop, $ac_index, 3); + my $isotype = $gc->get_tRNA_type($self, $anticodon, $self->{main_cm_file_path}->{$model}, $model, $self->cove_mode()); + if ($model eq $isotype or ($model eq "SerGCT" and $isotype eq "Ser") or ($model eq "SerTGA" and $isotype eq "Ser") + or ($model eq "LeuTAG" and $isotype eq "Leu") or ($model eq "LeuTAA" and $isotype eq "Leu") + or ($model eq "Cys_NoDarm" and $isotype eq "Cys")) + { + $trna->category("mito_ac_mislocation"); + $found = 1; + last; + } + $j = abs($j); + $j++; + if ($j % 2 == 1) + { + $j = $j * -1; + } + } + if ($found) + { + $verify_ac = uc(substr($seq, $ac_index + $antiloop_index, 3)); + } + } } # check to see if anticodon extracted from the entire @@ -1515,7 +1539,18 @@ if (length($trna->model()) > 3) { $model_iso = substr($trna->model(), 0, 3); - $model_ac = substr($trna->model(), 3); + if ($trna->model() =~ /^(\S+)_/) + { + my $temp = $1; + if (length($temp) > 3) + { + $model_ac = substr($temp, 3); + } + } + else + { + $model_ac = substr($trna->model(), 3); + } } if ($model_iso ne $isotype) { @@ -2593,9 +2628,9 @@ # $score_cutoff = $self->{organelle_cm_cutoff}; # } # else -# { +# { $score_cutoff = $self->{cm_cutoff}; -# } +# } foreach my $cur_cm (sort keys %{$self->{main_cm_file_path}}) { diff -Nru trnascan-se-2.0.9+ds/lib/tRNAscanSE/Options.pm trnascan-se-2.0.10+ds/lib/tRNAscanSE/Options.pm --- trnascan-se-2.0.9+ds/lib/tRNAscanSE/Options.pm 2021-07-12 13:22:10.000000000 +0000 +++ trnascan-se-2.0.10+ds/lib/tRNAscanSE/Options.pm 2022-09-10 09:14:20.000000000 +0000 @@ -830,7 +830,8 @@ # } # else # { - if ($cm->cm_cutoff() != $global_constants->get("cm_cutoff")) + if (((!$self->mito_mode() and !$self->organelle_mode()) and $cm->cm_cutoff() != $global_constants->get("cm_cutoff")) or + (($self->mito_mode() or $self->organelle_mode()) and $cm->cm_cutoff() != $global_constants->get("organelle_cm_cutoff"))) { print $FHAND "tRNA covariance model search \n"." cutoff score: ".$cm->cm_cutoff()."\n"; } diff -Nru trnascan-se-2.0.9+ds/lib/tRNAscanSE/ScanResult.pm trnascan-se-2.0.10+ds/lib/tRNAscanSE/ScanResult.pm --- trnascan-se-2.0.9+ds/lib/tRNAscanSE/ScanResult.pm 2021-07-12 20:37:01.000000000 +0000 +++ trnascan-se-2.0.10+ds/lib/tRNAscanSE/ScanResult.pm 2022-09-10 01:32:16.000000000 +0000 @@ -1107,6 +1107,10 @@ { $bed_score = 1000; } + elsif ($bed_score < 0) + { + $bed_score = 0; + } return $bed_score; } diff -Nru trnascan-se-2.0.9+ds/Makefile.am trnascan-se-2.0.10+ds/Makefile.am --- trnascan-se-2.0.9+ds/Makefile.am 2017-12-03 07:00:58.000000000 +0000 +++ trnascan-se-2.0.10+ds/Makefile.am 2022-09-12 07:17:24.000000000 +0000 @@ -29,7 +29,7 @@ # process scripts # treat tRNAscan-SE.conf as a script since it's just easier -dist_bin_SCRIPTS = bin/sstofa bin/fasta2gsi bin/EukHighConfidenceFilter tRNAscan-SE tRNAscan-SE.conf +dist_bin_SCRIPTS = bin/sstofa bin/fasta2gsi bin/EukHighConfidenceFilter bin/MitoHighConfidenceFilter tRNAscan-SE tRNAscan-SE.conf # for a few files, need to substitute perl path, bin directory, and lib directory # first, define a function for it do_subst = sed -e 's,\@bindir\@,$(bindir),g' -e 's,\@libdir\@,$(libdir),g' -e 's,[@]PERL[@],$(PERL),g' -e 's,\@INFERNAL\@,$(INFERNAL),g' @@ -37,7 +37,7 @@ # extra steps for cleaning/distribution CLEANFILES = $(dist_bin_SCRIPTS) $(srcdir)/lib/* include_HEADERS = $(srcdir)/src/*.h -EXTRA_DIST = lib src/sstofa.in src/fasta2gsi.in EukHighConfidenceFilter tRNAscan-SE.src tRNAscan-SE.conf.src +EXTRA_DIST = lib src/sstofa.in src/fasta2gsi.in EukHighConfidenceFilter MitoHighConfidenceFilter tRNAscan-SE.src tRNAscan-SE.conf.src # then create build rules @@ -61,6 +61,10 @@ $(do_subst) < $(srcdir)/EukHighConfidenceFilter.in > bin/EukHighConfidenceFilter chmod +x bin/EukHighConfidenceFilter +bin/MitoHighConfidenceFilter: MitoHighConfidenceFilter.in Makefile + $(do_subst) < $(srcdir)/MitoHighConfidenceFilter.in > bin/MitoHighConfidenceFilter + chmod +x bin/MitoHighConfidenceFilter + # copy libraries. We don't have "libraries" in the libgmp.so.4 kind, but we do have data libraries, so we don't have to deal with lib_LTLIBRARIES. install-data-hook: chmod u+w $(exec_prefix) diff -Nru trnascan-se-2.0.9+ds/MitoHighConfidenceFilter.in trnascan-se-2.0.10+ds/MitoHighConfidenceFilter.in --- trnascan-se-2.0.9+ds/MitoHighConfidenceFilter.in 1970-01-01 00:00:00.000000000 +0000 +++ trnascan-se-2.0.10+ds/MitoHighConfidenceFilter.in 2022-09-22 23:07:59.000000000 +0000 @@ -0,0 +1,790 @@ +#! @PERL@ -w +# +# -------------------------------------------------------------------- +# MitoHighConfidenceFilter v1.0 +# +# Annotate mitochondrial tRNA pseudogenes from tRNAscan-SE 2.0 predictions +# +# Copyright (C) 2022 Patricia Chan and Todd Lowe +# +# Baskin School of Engineering, University of California, Santa Cruz +# trna@soe.ucsc.edu +# http://trna.ucsc.edu/tRNAscan-SE/ +# -------------------------------------------------------------------- + +use strict; +use lib "@libdir@/tRNAscan-SE"; +use Getopt::Long; + +use tRNAscanSE::tRNA; +use tRNAscanSE::ArraytRNA; + +our @isotypes = ('Ala', 'Gly', 'Pro', 'Thr', 'Val', + 'Ser', 'Arg', 'Leu', + 'Phe','Asn', 'Lys', 'Asp', 'Glu', 'His', 'Gln', + 'Ile', 'Met', 'Tyr', 'Sup', 'Cys', 'Trp'); + +our @models = ('Ala', 'Gly', 'Pro', 'Thr', 'Val', + 'SerGCT', 'SerTGA', 'Arg', 'LeuTAA', 'LeuTAG', + 'Phe','Asn', 'Lys', 'Asp', 'Glu', 'His', 'Gln', + 'Ile', 'Met', 'Tyr', 'Cys', 'Trp'); + +our %ac_list = ( + 'Ala' => [qw/AGC GGC CGC TGC/], + 'Gly' => [qw/ACC GCC CCC TCC/], + 'Pro' => [qw/AGG GGG CGG TGG/], + 'Thr' => [qw/AGT GGT CGT TGT/], + 'Val' => [qw/AAC GAC CAC TAC/], + + 'Ser' => [qw/AGA GGA CGA TGA ACT GCT    /], + 'Arg' => [qw/ACG GCG CCG TCG     CCT TCT/], + 'Leu' => [qw/AAG GAG CAG TAG     CAA TAA/], + + 'Phe' => [qw/AAA GAA    /], + + 'Asn' => [qw/ATT GTT    /], + 'Lys' => [qw/    CTT TTT/], + + 'Asp' => [qw/ATC GTC     /], + 'Glu' => [qw/    CTC TTC/], + + 'His' => [qw/ATG GTG     /], + 'Gln' => [qw/    CTG TTG/], + + 'Tyr' => [qw/ATA GTA     /], + 'Sup' => [qw/    CTA TTA/], + + 'Ile' => [qw/AAT GAT   TAT/], + 'Met' => [qw/    CAT  /], + + 'Cys' => [qw/ACA GCA     /], + 'Trp' => [qw/    CCA  /], + 'SeC' => [qw/      TCA/] + ); + +our %aa_list = ( + 'AGC'=>'Ala', 'GGC'=>'Ala', 'CGC'=>'Ala', 'TGC'=>'Ala', + 'ACC'=>'Gly', 'GCC'=>'Gly', 'CCC'=>'Gly', 'TCC'=>'Gly', + 'AGG'=>'Pro', 'GGG'=>'Pro', 'CGG'=>'Pro', 'TGG'=>'Pro', + 'AGT'=>'Thr', 'GGT'=>'Thr', 'CGT'=>'Thr', 'TGT'=>'Thr', + 'AAC'=>'Val', 'GAC'=>'Val', 'CAC'=>'Val', 'TAC'=>'Val', + + 'AGA'=>'Ser', 'GGA'=>'Ser', 'CGA'=>'Ser', 'TGA'=>'Ser', 'ACT'=>'Ser', 'GCT'=>'Ser', + 'ACG'=>'Arg', 'GCG'=>'Arg', 'CCG'=>'Arg', 'TCG'=>'Arg', 'CCT'=>'Arg', 'TCT'=>'Arg', + 'AAG'=>'Leu', 'GAG'=>'Leu', 'CAG'=>'Leu', 'TAG'=>'Leu', 'CAA'=>'Leu', 'TAA'=>'Leu', + + 'AAA'=>'Phe', 'GAA'=>'Phe', + + 'ATT'=>'Asn', 'GTT'=>'Asn', + 'CTT'=>'Lys', 'TTT'=>'Lys', + + 'ATC'=>'Asp', 'GTC'=>'Asp', + 'CTC'=>'Glu', 'TTC'=>'Glu', + + 'ATG'=>'His', 'GTG'=>'His', + 'CTG'=>'Gln', 'TTG'=>'Gln', + + 'ATA'=>'Tyr', 'GTA'=>'Tyr', + 'CTA'=>'Sup', 'TTA'=>'Sup', + + 'AAT'=>'Ile', 'GAT'=>'Ile', 'TAT'=>'Ile', + 'CAT'=>'Met', + + 'ACA'=>'Cys', 'GCA'=>'Cys', + 'CCA'=>'Trp', + 'TCA'=>'SeC', + ); + +our ($opt_result, $opt_ss, $opt_output, $opt_prefix, $opt_remove, $opt_score, $opt_help); + +our %file_names = (); +our $tRNAs = tRNAscanSE::ArraytRNA->new(); +our %tRNA_counts = (); + +&set_options(); +&set_file_names(); +my ($ac_count) = &filtering(); +&print_results($ac_count); + +exit; + +sub set_options +{ + $opt_result = ""; + $opt_ss = ""; + $opt_output = ""; + $opt_prefix = ""; + $opt_remove = 0; + $opt_score = 30; + + Getopt::Long::GetOptions("result|i=s", "ss|s=s", "output|o=s", "prefix|p=s", "remove|r", + "score|c=f", "help|h"); + + if ($opt_help || $opt_result eq "" || $opt_ss eq "" || $opt_output eq "" || $opt_prefix eq "" || $opt_score < 0) + { + die "Usage: MitoHighConfidenceFilter [options]\n", + "Options\n", + "--result -i tRNAscan-SE output file used as input\n", + "--ss -s tRNAscan-SE secondary structure file used as input\n", + "--output -o Directory where output files will be written\n", + "--prefix -p Prefix for output file name\n", + "--remove -r Remove filtered tRNA hits (default: filtered tRNA hits are only tagged)\n", + "--score -c Score cutoff for pseudogenes (default = 30)\n", + "--help -h Print this help\n\n"; + } +} + +sub set_file_names +{ + system("mkdir -p ".$opt_output); + $file_names{tRNAscan_out} = $opt_result; + $file_names{tRNAscan_ss} = $opt_ss; + $file_names{output_tRNAscan_out} = $opt_output."/".$opt_prefix.".out"; + $file_names{output_tRNAscan_ss} = $opt_output."/".$opt_prefix.".ss"; + $file_names{log} = $opt_output."/".$opt_prefix.".log"; +} + +sub filtering +{ + my $iso_score_cutoff = {}; + + &read_tRNAs(); + my ($isotype_count, $isotype_max_score) = &get_isotype_count(); + &pseudogene_filter($isotype_count, $isotype_max_score); + $tRNAs->sort_array("tRNAscan_id"); + my $ac_count = &get_ac_count(); + + return ($ac_count); +} + +sub print_results +{ + my ($ac_count) = @_; + &write_out_file(); + &write_ss_file(); + &write_summary($ac_count); +} + +sub read_tRNAs +{ + my $line = ""; + my $tRNA = undef; + my %header = (); + my ($startpos, $endpos); + my @columns = (); + my $ct = 0; + + $tRNA_counts{total} = 0; + + print "Status: Reading tRNA preedictions\n"; + + open(FILE_IN, "$file_names{tRNAscan_out}") or die "Fail to open $file_names{tRNAscan_out}\n"; + + while ($line = ) + { + $ct++; + + print STDERR "." if ($ct % 1000 == 0); + print STDERR "\n" if ($ct % 50000 == 0); + + chomp($line); + if ($line =~ /^Name/) + { + $line =~ s/tRNA #/tRNA#/; + } + if ($line =~ /^Sequence/) + { + $line =~ s/Intron Bounds/Intron\tBound/; + } + + @columns = split(/\t/, $line, -1); + for (my $i = 0; $i < scalar(@columns); $i++) + { + $columns[$i] = &trim($columns[$i]); + } + + if ($columns[0] =~ /^Sequence/ || $columns[0] =~ /^Name/ || $columns[0] =~ /^-----/) + { + if ($columns[0] =~ /^Sequence/) + { + for (my $i = 0; $i < scalar(@columns); $i++) + { + if ($columns[$i] eq "Sequence") + { + $header{seqname} = $i; + } + elsif ($columns[$i] eq "Anti") + { + $header{anticodon} = $i; + } + elsif ($columns[$i] eq "Intron") + { + $header{intron_start} = $i; + $header{intron_end} = $i+1; + } + elsif ($columns[$i] eq "Inf") + { + $header{score} = $i; + } + } + } + elsif ($columns[0] =~ /^Name/) + { + for (my $i = 0; $i < scalar(@columns); $i++) + { + if ($columns[$i] eq "tRNA#") + { + $header{trna_id} = $i; + } + elsif ($columns[$i] eq "Begin" and !defined $header{start}) + { + $header{start} = $i; + $header{end} = $i+1; + } + elsif ($columns[$i] eq "Type") + { + $header{isotype} = $i; + } + elsif ($columns[$i] eq "Note") + { + $header{note} = $i; + } + } + } + } + else + { + if (!defined $header{note}) + { + die "Error: This filter requires tRNAscan-SE v2 output file.\n"; + } + + $tRNA_counts{total}++; + + $tRNA = tRNAscanSE::tRNA->new; + $tRNA->seqname($columns[$header{seqname}]); + $tRNA->tRNAscan_id($columns[$header{seqname}].".trna".$columns[$header{trna_id}]); + $startpos = $columns[$header{start}]; + $endpos = $columns[$header{end}]; + if ($startpos < $endpos) + { + $tRNA->start($startpos); + $tRNA->end($endpos); + $tRNA->strand("+"); + } + else + { + $tRNA->end($startpos); + $tRNA->start($endpos); + $tRNA->strand("-"); + } + $tRNA->isotype($columns[$header{isotype}]); + $tRNA->anticodon($columns[$header{anticodon}]); + $tRNA->score($columns[$header{score}]); + $tRNA->tRNAscan_id($tRNA->tRNAscan_id()."-".$tRNA->isotype().$tRNA->anticodon()); + $tRNAs->put($tRNA); + } + } + + close(FILE_IN); + + print STDERR "\n"; +} + +sub pseudogene_filter +{ + my ($isotype_count, $isotype_max_score) = @_; + + print "Status: Pseudogene filtering\n"; + + my %model_hash = (); + for my $isotype (sort @models) + { + $model_hash{$isotype} = 0; + } + + $tRNA_counts{pseudogene_filter} = 0; + $tRNA_counts{secondary_filter} = 0; + for (my $i = 0; $i < $tRNAs->get_count(); $i++) + { + my $tRNA = $tRNAs->get($i); + my $iso = $tRNA->isotype(); + if ($tRNA->isotype() eq "Leu" or $tRNA->isotype() eq "Ser") + { + $iso = $tRNA->isotype().$tRNA->anticodon(); + } + if (defined $model_hash{$iso}) + { + if ($isotype_count->{$iso} > 1) + { + if ($tRNA->score() < $isotype_max_score->{$iso}) + { + if ($tRNA->score() < $opt_score) + { + $tRNA_counts{pseudogene_filter}++; + $tRNA->pseudo(1); + } + else + { + $tRNA_counts{secondary_filter}++; + $tRNA->pseudo(2); + } + } + } + } + else + { + if (($tRNA->isotype() eq "Leu" and $isotype_count->{"LeuTAA"} > 0 and $isotype_count->{"LeuTAG"} > 0) + or ($tRNA->isotype() eq "Ser" and $isotype_count->{"SerGCT"} > 0 and $isotype_count->{"SerTGA"} > 0)) + { + if ($tRNA->score() < $opt_score) + { + $tRNA_counts{pseudogene_filter}++; + $tRNA->pseudo(1); + } + else + { + $tRNA_counts{secondary_filter}++; + $tRNA->pseudo(2); + } + } + elsif ($tRNA->isotype() ne "Leu" and $tRNA->isotype() ne "Ser") + { + if ($tRNA->score() < $opt_score) + { + $tRNA_counts{pseudogene_filter}++; + $tRNA->pseudo(1); + } + else + { + $tRNA_counts{secondary_filter}++; + $tRNA->pseudo(2); + } + } + } + } +} + +sub get_ac_count +{ + my %ac_count = (); + + for my $ac (sort keys %aa_list) + { + $ac_count{$ac} = 0; + } + + for (my $i = 0; $i < $tRNAs->get_count(); $i++) + { + my $tRNA = $tRNAs->get($i); + if (!$tRNA->is_pseudo()) + { + $ac_count{$tRNA->anticodon()} += 1; + } + } + + return \%ac_count; +} + +sub get_isotype_count +{ + my %isotype_count = (); + my %isotype_max_score = (); + my $iso = ""; + + for my $isotype (sort @models) + { + $isotype_count{$isotype} = 0; + $isotype_max_score{$isotype} = 0; + } + + for (my $i = 0; $i < $tRNAs->get_count(); $i++) + { + my $tRNA = $tRNAs->get($i); + $iso = $tRNA->isotype(); + if ($tRNA->isotype() eq "Leu" or $tRNA->isotype() eq "Ser") + { + $iso = $tRNA->isotype().$tRNA->anticodon(); + } + if (defined $isotype_count{$iso}) + { + $isotype_count{$iso} += 1; + } + else + { + $isotype_count{$iso} = 1; + } + if (defined $isotype_max_score{$iso}) + { + $isotype_max_score{$iso} = &max($isotype_max_score{$iso}, $tRNA->score()); + } + else + { + $isotype_max_score{$iso} = $tRNA->score(); + } + } + + return (\%isotype_count, \%isotype_max_score); +} + +sub max +{ + my ($a, $b) = @_; + my $value = $a; + if ($a < $b) + { + $value = $b; + } + return $value; +} + +sub write_out_file +{ + my $line = ""; + my $tRNA = undef; + my %header = (); + my @columns = (); + my $tRNAscan_id = ""; + my $index = -1; + my $include = 0; + my $tag = ""; + my $ct = 0; + + print "Status: Writing output file $file_names{output_tRNAscan_out}\n"; + + open(FILE_IN, "$file_names{tRNAscan_out}") or die "Fail to open $file_names{tRNAscan_out}\n"; + open(FILE_OUT, ">$file_names{output_tRNAscan_out}") or die "Fail to open $file_names{output_tRNAscan_out}\n"; + + while ($line = ) + { + $ct++; + + print STDERR "." if ($ct % 1000 == 0); + print STDERR "\n" if ($ct % 50000 == 0); + + chomp($line); + if ($line =~ /^Name/) + { + $line =~ s/tRNA #/tRNA#/; + } + + @columns = split(/\t/, $line, -1); + for (my $i = 0; $i < scalar(@columns); $i++) + { + $columns[$i] = &trim($columns[$i]); + } + + if ($columns[0] =~ /^Sequence/ || $columns[0] =~ /^Name/ || $columns[0] =~ /^-----/) + { + print FILE_OUT $line."\n"; + if ($columns[0] =~ /^Sequence/) + { + for (my $i = 0; $i < scalar(@columns); $i++) + { + if ($columns[$i] eq "Sequence") + { + $header{seqname} = $i; + } + elsif ($columns[$i] eq "Anti") + { + $header{anticodon} = $i; + } + } + } + elsif ($columns[0] =~ /^Name/) + { + for (my $i = 0; $i < scalar(@columns); $i++) + { + if ($columns[$i] eq "tRNA#") + { + $header{trna_id} = $i; + } + elsif ($columns[$i] eq "Type") + { + $header{isotype} = $i; + } + elsif ($columns[$i] eq "Note") + { + $header{note} = $i; + } + } + } + } + else + { + $include = 0; + $tag = ""; + $tRNAscan_id = $columns[$header{seqname}].".trna".$columns[$header{trna_id}]."-".$columns[$header{isotype}].$columns[$header{anticodon}]; + $index = $tRNAs->bsearch_id($tRNAscan_id, "tRNAscan_id"); + if ($index == -1) + { + if (!$opt_remove) + { + $include = 1; + } + } + else + { + $tRNA = $tRNAs->get($index); + if ($tRNA->is_pseudo()) + { + if (!$opt_remove) + { + $include = 1; + if ($tRNA->pseudo() == 1) + { + $tag = "pseudo"; + } + elsif ($tRNA->pseudo() == 2) + { + $tag = "extra gene"; + } + } + } + else + { + $include = 1; + } + } + if ($include) + { + for (my $i = 0; $i < $header{note}; $i++) + { + print FILE_OUT $columns[$i]."\t"; + } + if ($columns[$header{note}] ne "") + { + print FILE_OUT $columns[$header{note}]; + if ($tag ne "") + { + print FILE_OUT "; ".$tag; + } + } + else + { + print FILE_OUT $tag; + } + for (my $i = $header{note} + 1; $i < scalar(@columns); $i++) + { + print FILE_OUT "\t".$columns[$i]; + } + print FILE_OUT "\n"; + } + } + } + close(FILE_IN); + close(FILE_OUT); + + print STDERR "\n"; +} + +sub write_ss_file +{ + my $tRNA = undef; + my $line = ""; + my $tRNAscan_id = ""; + my $seqname = ""; + my $index = -1; + my $print_line = ""; + my $include = 0; + my $tag = ""; + my $ct = 0; + + print "Status: Writing secondary structure file $file_names{output_tRNAscan_ss}\n"; + + open(FILE_IN, "$file_names{tRNAscan_ss}") || die "Error: Fail to open $file_names{tRNAscan_ss}\n"; + open(FILE_OUT, ">$file_names{output_tRNAscan_ss}") or die "Fail to open $file_names{output_tRNAscan_ss}\n"; + while ($line = ) + { + if ($line =~ /^(\S+)\s+\(\d+\-\d+\)\s+Length:\s\d+\sbp/) + { + $tRNAscan_id = $1; + $seqname = substr($tRNAscan_id, 0, rindex($tRNAscan_id, ".")); + $print_line = $line; + $include = 0; + $tag = ""; + + $ct++; + print STDERR "." if ($ct % 1000 == 0); + print STDERR "\n" if ($ct % 50000 == 0); + } + elsif ($line =~ /^Type:\s(\S+)\s+Anticodon:\s(\S+)\sat\s.+\s\(.+\)\s+Score:\s\S+/) + { + $tRNAscan_id .= "-".$1.$2; + $print_line .= $line; + + $index = $tRNAs->bsearch_id($tRNAscan_id, "tRNAscan_id"); + if ($index == -1) + { + if (!$opt_remove) + { + $include = 1; + } + } + else + { + $tRNA = $tRNAs->get($index); + if ($tRNA->is_pseudo() and !$opt_remove) + { + $include = 1; + if ($tRNA->pseudo() == 1) + { + $tag = "Possible pseudogene"; + } + elsif ($tRNA->pseudo() == 2) + { + $tag = "Possible extra gene"; + } + } + elsif (!$tRNA->is_pseudo()) + { + $include = 1; + } + } + if ($tag ne "") + { + $print_line .= "Note: ".$tag; + } + } + elsif ($line =~ /^Note: /) + { + if ($tag ne "") + { + $print_line .= "; ".substr($line, 6); + } + else + { + $print_line .= $line; + } + } + elsif (index($line, " * | * | * |") > -1) + { + $print_line .= $line; + } + elsif ($line =~ /^Seq:\s\S+$/) + { + $print_line .= $line; + } + elsif ($line =~ /^Str:\s\S+$/) + { + $print_line .= $line; + if ($include) + { + print FILE_OUT $print_line."\n"; + } + } + } + close(FILE_IN); + close(FILE_OUT); + + print STDERR "\n"; +} + +sub write_summary +{ + my ($ac_count) = @_; + + print "Status: Writing summary file $file_names{log}\n"; + + open(FILE_OUT, ">$file_names{log}") or die "Fail to open $file_names{log}\n"; + + print FILE_OUT "MitoPseudogeneFilter v1.0 Summary\n", + "Completed Time: ".localtime()."\n\n"; + print FILE_OUT "Inputs\n", + "------------------------------------------------------\n", + "tRNAscan-SE output file: ".$file_names{tRNAscan_out}."\n", + "tRNAscan-SE ss file: ".$file_names{tRNAscan_ss}."\n"; + print FILE_OUT "Pseudogene filtering score cutoff: $opt_score\n"; + if ($opt_remove) + { + print FILE_OUT "Remove filtered hits: Yes\n"; + } + else + { + print FILE_OUT "Remove filtered hits: No\n"; + } + print FILE_OUT "\n"; + print FILE_OUT "Outputs\n", + "------------------------------------------------------\n", + "tRNAscan-SE output file: ".$file_names{output_tRNAscan_out}."\n", + "tRNAscan-SE ss file: ".$file_names{output_tRNAscan_ss}."\n", + "Summary file: ".$file_names{log}."\n\n"; + + my $remaining_hits = $tRNA_counts{total} - $tRNA_counts{pseudogene_filter}; + print FILE_OUT "Summary statistics\n", + "------------------------------------------------------\n"; + print FILE_OUT "Total tRNA predictions: ".$tRNA_counts{total}."\n"; + print FILE_OUT "Possible pseudogenes: ".$tRNA_counts{pseudogene_filter}."\n"; + print FILE_OUT "Extra tRNA genes with score > cutoff and < highest: ".$tRNA_counts{secondary_filter}."\n"; + + $remaining_hits -= $tRNA_counts{secondary_filter}; + print FILE_OUT "High confidence set: ".$remaining_hits."\n\n"; + + my %isotype_count = (); + foreach my $ac (sort keys %aa_list) + { + if (!defined $isotype_count{$aa_list{$ac}}) + { + $isotype_count{$aa_list{$ac}} = $ac_count->{$ac}; + } + else + { + $isotype_count{$aa_list{$ac}} += $ac_count->{$ac}; + } + } + + print FILE_OUT "Isotype / Anticodon Counts After Filtering\n", + "------------------------------------------------------\n\n"; + + foreach my $aa (@isotypes) + { + my $iso_count = 0; + if (defined $isotype_count{$aa}) + { + $iso_count = $isotype_count{$aa}; + } + if ($aa eq "SeC") + { + printf FILE_OUT ("%-8s: %d\t", "SelCys", $iso_count); + } + elsif ($aa eq "Sup") + { + printf FILE_OUT ("%-8s: %d\t", "Supres", $iso_count); + } + else + { + printf FILE_OUT ("%-8s: %d\t", $aa, $iso_count); + } + + foreach my $ac (@{$ac_list{$aa}}) + { + if ($ac eq " ") + { + print FILE_OUT " "; + } + else + { + if (defined $ac_count->{$ac}) + { + printf FILE_OUT ("%5s: %-6s", $ac, $ac_count->{$ac}); + } + else + { + printf FILE_OUT ("%5s: %-6s", $ac, ""); + } + } + } + print FILE_OUT "\n"; + } + print FILE_OUT "\n"; + + close(FILE_OUT); +} + +sub trim +{ + my $string = shift; + $string =~ s/^\s+//; + $string =~ s/\s+$//; + return $string; +} diff -Nru trnascan-se-2.0.9+ds/README trnascan-se-2.0.10+ds/README --- trnascan-se-2.0.9+ds/README 2020-06-02 02:57:01.000000000 +0000 +++ trnascan-se-2.0.10+ds/README 2022-09-13 23:15:21.000000000 +0000 @@ -5,16 +5,10 @@ School of Engineering, University of California, Santa Cruz, CA -------------------------------------------------------------- -Current release: 2.0.6 (May 2020) -tRNAscan-SE was written in the PERL (version 5) script language. -Input consists of DNA or RNA sequences in FASTA format. tRNA -predictions are output in standard tabular or ACeDB format. -tRNAscan-SE does no tRNA detection itself, but instead combines the -strengths of three independent tRNA prediction programs by negotiating -the flow of information between them, performing a limited amount of -post-processing, and outputting the results in one of several -formats. +tRNAscan-SE predicts tRNA genes from input DNA or RNA sequences +in FASTA format. tRNA predictions are output in standard tabular format, +secondary structure file, FASTA file, BED file, and GTF file. tRNAscan-SE pioneers the large-scale use of covariance models to annotate tRNA genes in genomes. A covariance model is an implementation of @@ -32,12 +26,12 @@ which is still available as a backward compatible option. Predicted tRNA genes will then be assessed using a set of isotype-specific covariance models. Comparative analysis among these models enables better annotation, -particularly of atypical tRNAs, some of which may produce ÒrecodingÓ +particularly of atypical tRNAs, some of which may produce recoding events due to mutations in the anticodon. The new tRNAscan-SE also enables better recognition of tRNA-derived SINEs that are abundant in many eukaryotic genomes by using a post quality filter. -This distribution includes the PERL script tRNAscan-SE, the convariance +This distribution includes the source code of tRNAscan-SE, the convariance models, all the files necessary to compile and run the complete COVE package (version 2.4.4), all the files necessary to compile and run the modified version of tRNAscan (version 1.4), and all the files needed to compile @@ -50,17 +44,23 @@ and using tRNAscan-SE. The Infernal source package can be obtained at http://eddylab.org/infernal/. -You can obtain a copy of this software from -http://lowelab.ucsc.edu/software/tRNAscan-SE.tar.gz - -If you use this software, please cite the Nucleic Acids Research paper -describing the program & its analysis of several genomes (4). +A copy of this software can be obtained at +http://trna.ucsc.edu/tRNAscan-SE/ +or at +https://github.com/UCSC-LoweLab/tRNAscan-SE + +If you use this software, please cite + +Chan, P.P., Lin, B.Y., Mak, A.J. and Lowe, T.M. (2021) "tRNAscan-SE 2.0: +improved detection and functional classification of transfer RNA genes", +Nucleic Acids Res. 49:9077–9096. +https://doi.org/10.1093/nar/gkab688 If you have any questions, bug reports, or suggestions, please e-mail - Todd Lowe - lowe@soe.ucsc.edu + trna@soe.ucsc.edu + Lowe Lab Department of Biomolecular Engineering University of California 1156 High Street @@ -82,7 +82,3 @@ S. (1994) "Identification of new eukaryotic tRNA genes in genomic DNA databases by a multistep weight matrix analysis of transcriptional control regions", Nucl. Acids Res., 22, 1247-1256. - -5. Lowe, T.M. & Eddy, S.R. (1997) "tRNAscan-SE: A program - for improved detection of transfer RNA genes in genomic - sequence", Nucl. Acids Res., 25, 955-964. diff -Nru trnascan-se-2.0.9+ds/tRNAscan-SE.conf.src trnascan-se-2.0.10+ds/tRNAscan-SE.conf.src --- trnascan-se-2.0.9+ds/tRNAscan-SE.conf.src 2021-03-04 17:33:20.000000000 +0000 +++ trnascan-se-2.0.10+ds/tRNAscan-SE.conf.src 2022-09-10 06:27:18.000000000 +0000 @@ -29,8 +29,8 @@ isotype_cm_cutoff.euk: 20 isotype_cm_cutoff.arch: 20 isotype_cm_cutoff.bact: 20 -isotype_cm_cutoff.mito_mammal: 20 -isotype_cm_cutoff.mito_vert: 20 +isotype_cm_cutoff.mito_mammal: 15 +isotype_cm_cutoff.mito_vert: 15 # max size of -w parameter passed to covels when using a pre-scanner (eufind or tRNAscan) max_tRNA_length: 500 @@ -166,6 +166,7 @@ mito_cm_vert.Asn: {mito_cm_vert_dir}/TRNAinf-mito-vert-Asn.cm mito_cm_vert.Asp: {mito_cm_vert_dir}/TRNAinf-mito-vert-Asp.cm mito_cm_vert.Cys: {mito_cm_vert_dir}/TRNAinf-mito-vert-Cys.cm +mito_cm_vert.Cys_NoDarm: {mito_cm_vert_dir}/TRNAinf-mito-vert-Cys-no-darm.cm mito_cm_vert.Gln: {mito_cm_vert_dir}/TRNAinf-mito-vert-Gln.cm mito_cm_vert.Glu: {mito_cm_vert_dir}/TRNAinf-mito-vert-Glu.cm mito_cm_vert.Gly: {mito_cm_vert_dir}/TRNAinf-mito-vert-Gly.cm diff -Nru trnascan-se-2.0.9+ds/tRNAscan-SE.src trnascan-se-2.0.10+ds/tRNAscan-SE.src --- trnascan-se-2.0.9+ds/tRNAscan-SE.src 2021-07-12 21:26:49.000000000 +0000 +++ trnascan-se-2.0.10+ds/tRNAscan-SE.src 2022-09-11 05:52:33.000000000 +0000 @@ -4,9 +4,9 @@ # tRNAscan-SE: a program for improved detection of transfer RNA # genes in genomic sequence # -# Version 2.0.9 +# Version 2.0.10 # -# Copyright (C) 2021 Patricia Chan and Todd Lowe +# Copyright (C) 2022 Patricia Chan and Todd Lowe # # School of Engineering, University of California, Santa Cruz # trna@soe.ucsc.edu @@ -39,8 +39,8 @@ use tRNAscanSE::MultiResultFile; use tRNAscanSE::SS; -our $version = "2.0.9"; -our $release_date = "July 2021"; +our $version = "2.0.10"; +our $release_date = "Sept 2022"; our $program_id = "tRNAscan-SE-".$version; # modified by 'make' @@ -630,7 +630,7 @@ sub display_credits { - print STDERR "Copyright (C) 2020 Patricia Chan and Todd Lowe\n", + print STDERR "Copyright (C) 2022 Patricia Chan and Todd Lowe\n", " University of California Santa Cruz\n", "Freely distributed under the GNU General Public License (GPLv3)\n\n"; } @@ -1182,21 +1182,26 @@ } $opts->CM_mode("infernal"); + $cm->cm_cutoff($global_constants->get("organelle_cm_cutoff")); if ($opts->mito_model() eq "mammal" or $opts->mito_model() eq "vert") { $opts->gc_file($global_constants->get("gc_vert_mito")); $opts->alt_gcode(1); } - elsif ($opts->mito_model() eq "invert") - { - $opts->gc_file($global_constants->get("gc_invert_mito")); - $opts->alt_gcode(1); - } - elsif ($opts->mito_model() eq "fungi") +# elsif ($opts->mito_model() eq "invert") +# { +# $opts->gc_file($global_constants->get("gc_invert_mito")); +# $opts->alt_gcode(1); +# } +# elsif ($opts->mito_model() eq "fungi") +# { +# $opts->gc_file($global_constants->get("gc_yeast_mito")); +# $opts->alt_gcode(1); +# } + else { - $opts->gc_file($global_constants->get("gc_yeast_mito")); - $opts->alt_gcode(1); + die "FATAL: Invalid mitochondrial tRNA option. Only mammal or vert can be used.\n"; } }