--- apbs-1.0.0.orig/debian/control +++ apbs-1.0.0/debian/control @@ -0,0 +1,37 @@ +Source: apbs +Section: science +Priority: optional +Maintainer: Debichem Team +Uploaders: Michael Banck , + Daniel Leidert (dale) , + LI Daobing +Build-Depends: cdbs, debhelper (>= 5), autotools-dev, dpatch, bc, + libarpack2-dev, libblas-dev, libmaloc-dev, libmpich1.0-dev, gfortran, + python-minimal +Standards-Version: 3.7.3 +Homepage: http://apbs.sourceforge.net +Vcs-Browser: http://svn.debian.org/wsvn/debichem/ +Vcs-Svn: svn+ssh://svn.debian.org/svn/debichem/unstable/apbs/ +DM-Upload-Allowed: yes + +Package: apbs +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: Adaptive Poisson Boltzmann Solver + APBS is a software package for the numerical solution of the + Poisson-Boltzmann equation (PBE), one of the most popular continuum + models for describing electrostatic interactions between molecular + solutes in salty, aqueous media. Continuum electrostatics plays an + important role in several areas of biomolecular simulation, including: + . + * simulation of diffusional processes to determine ligand-protein and + protein-protein binding kinetics, + * implicit solvent molecular dynamics of biomolecules , + * solvation and binding energy calculations to determine + ligand-protein and protein-protein equilibrium binding constants + and aid in rational drug design, + * and biomolecular titration studies. + . + APBS was designed to efficiently evaluate electrostatic properties for + such simulations for a wide range of length scales to enable the + investigation of molecules with tens to millions of atoms. --- apbs-1.0.0.orig/debian/apbs.doc-base +++ apbs-1.0.0/debian/apbs.doc-base @@ -0,0 +1,13 @@ +Document: apbs +Title: APBS User's Guide +Author: Nathan A. Baker +Abstract: This is the user's guide for APBS. APBS is a software + package for the numerical solution of the Poisson-Boltzmann equation + (PBE), one of the most popular continuum models for describing + electrostatic interactions between molecular solutes in salty, + aqueous media. +Section: Science/Chemistry + +Format: HTML +Index: /usr/share/doc/apbs/html/user-guide/index.html +Files: /usr/share/doc/apbs/html/user-guide/*.html --- apbs-1.0.0.orig/debian/compat +++ apbs-1.0.0/debian/compat @@ -0,0 +1 @@ +5 --- apbs-1.0.0.orig/debian/apbs.dirs +++ apbs-1.0.0/debian/apbs.dirs @@ -0,0 +1 @@ +/usr/share/doc/apbs/html --- apbs-1.0.0.orig/debian/watch +++ apbs-1.0.0/debian/watch @@ -0,0 +1,4 @@ +# See uscan(1) for format + +version=3 +http://sf.net/apbs/apbs-([\d\.]+)-source\.tar\.gz --- apbs-1.0.0.orig/debian/changelog +++ apbs-1.0.0/debian/changelog @@ -0,0 +1,111 @@ +apbs (1.0.0-1) unstable; urgency=low + + * New upstream release. + + No longer contains a corrupted tarball (closes: #473822). + * debian/patches/04_remove_install-exec-am_rule.dpatch: Refreshed. + * debian/patches/05_reduce_test_suite.dpatch: New patch, remove most of the + coordinates for the ion test to save time (closes: 475064). + + -- Michael Banck Tue, 10 Jun 2008 14:25:47 +0200 + +apbs (0.5.1-2) unstable; urgency=low + + * Acknowledge NMU 0.5.1-1.1 (closes: #462263). Thanks to Colin Tuckley. + + [ Daniel Leidert ] + * debian/apbs.1: Added. + * debian/apbs.doc-base (Section): Adjusted accordingly to latest doc-base + policy. + * debian/apbs.install: Install lintian override. + * debian/compat: Raised to level 5. + * debian/control: Homepage field transition. Added Vcs fields. Added + DM-Upload-Allowed field for DM status. + (Maintainer): Set to the debichem team address. Moved Michael to + Uploaders. + (Uploaders): Added myself and LI Daobing. + (Standards-Version): Updated to latest 3.7.3 (no other changes). + (Build-Depends): Raised debhelper to v5. Added libarpack2-dev. Added + libmpich1.0-dev for MPI support. Added python-minimal for some tests. + * debian/copyright: Fixed old-fsf-address-in-copyright-file issue. Updated + copyright information. Added exception. + * debian/rules: Install the newly added apbs.1 manpage. + (DEB_CONFIGURE_EXTRA_FLAGS): Enable building with arpack (not useful atm + without tools). Set prefix. + (DEB_CONFIGURE_EXTRA_FLAGS, DEB_CONFIGURE_SCRIPT_ENV): Enable MPI. + (DEB_MAKE_INSTALL_TARGET): Only install from bin/ as long as we don't use + the rest. + * debian/watch: Updated to fit new source archive naming. + * debian/lintian-overrides/apbs: Added. The documentation contains the + license in several formats. + + [ LI Daobing ] + * FTBFS if built twice in a row (Closes: #424100) + + -- Daniel Leidert (dale) Mon, 10 Mar 2008 08:46:53 +0100 + +apbs (0.5.1-1.1) unstable; urgency=low + + * Non-maintainer upload + * Build depend on libblas-dev instead of refblas3-dev (closes: #462263) + * Add gfortran to Build Depends: to fix FTBFS in clean chroot + + -- Colin Tuckley Mon, 28 Jan 2008 11:05:21 +0000 + +apbs (0.5.1-1) unstable; urgency=low + + * New upstream release. + + [ Daniel Leidert ] + * debian/control (Build-Depends): Added dpatch and autotools-dev. + (Standards-Version): Changed to latest standards version 3.7.2. + (Description): Added Homepage field. + * debian/copyright: Fixed download location after apbs has been moved to + sourceforge.net. + * debian/rules: Changed to use dpatch.mk instead of simple-patchsys.mk. + Added buildcore.mk ruleset. Added FFLAGS flags to configure. + * debian/watch: Added. + * debian/patches/01_html_documentation.dpatch: Added. Replaces + debian/patches/01_html_docu.patch. + * debian/patches/02_remove_vf2c.dpatch: Added. Replaces + debian/patches/02_remove_vf2c.patch. + * debian/patches/90_autoreconf.dpatch: Added. Replaces + debian/patches/90_autoreconf.patch. Probably closes: #424100. + * debian/patches/00list: Added. + + [ Michael Banck ] + * debian/patches/01_html_documentation: Updated. + * debian/patches/02_remove_vf2c: Removed; no longer needed. + * debian/patches/90_autoreconf: Likewise. + * debian/control (Build-Depends): Added bc, needed for the test suite. + * debian/rules (DEB_CONFIGURE_EXTRA_FLAGS): Added + --with-fetk-include=/usr/include --with-fetk-library=/usr/lib + --with-blas=-lblas. + * debian/rules (DEB_MAKE_CHECK_TARGET): New target, run the test suite. + * debian/patches/03_skip_expensive_tests.dpatch: New patch, skip tests which + take a lot of memory and CPU. + * debian/patches/04_remove_install-exec-am_rule.dpatch: New patch, remove + the install-exec-am rule from the top-level Makefile. We can just install + that data manually and it does not support DESTDIR anyway. + * debian/apbs.install: Updated location of the user's guide and tutorial in + the source tree. Install license.html as well. + + -- Michael Banck Wed, 18 Jul 2007 15:48:58 +0200 + +apbs (0.4.0-2) unstable; urgency=low + + * debian/patches: New directory, manage changes to upstream with + simple-patchsys.mk. + * debian/patches/01_html_docu.patch: New patch, supress link to the + programmer's manual we don't ship for now. + * debian/patches/02_remove_vf2c.patch: New patch, remove MALOC's own + -lvf2c f2c fork from linking. + * debian/patches/90_autoreconf.patch: Update libtool; closes: #378211. + + -- Michael Banck Sun, 10 Sep 2006 19:14:24 +0200 + +apbs (0.4.0-1) unstable; urgency=low + + * Initial release. + + -- Michael Banck Thu, 29 Jun 2006 17:10:18 +0200 + --- apbs-1.0.0.orig/debian/copyright +++ apbs-1.0.0/debian/copyright @@ -0,0 +1,55 @@ +This package was debianized by Michael Banck on +Thu, 29 Jun 2006 17:10:18 +0200. + +It was downloaded from http://downloads.sourceforge.net/apbs/. + +Upstream Author: Nathan A. Baker + +Copyright Holder: + + Copyright (C) 2002-2007. Washington University in St. Louis. + Portions Copyright (C) 1999-2002. The Regents of the University + of California. + Portions Copyright (C) 1995. Michael Holst. + +License: + + This package is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this package; if not, write to the Free Software + Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA + 02110-1301 USA. + + Linking APBS statically or dynamically with other modules is making a + combined work based on APBS. Thus, the terms and conditions of the GNU + General Public License cover the whole combination. + + SPECIAL GPL EXCEPTION + In addition, as a special exception, the copyright holders of APBS give you + permission to combine the APBS program with free software programs and + libraries that are released under the GNU LGPL or with code included in + releases of ISIM, Ion Simulator Interface, PMV, SMOL, VMD, and Vision. Such + combined software may be linked with APBS and redistributed together in + original or modified form as mere aggregation without requirement that the + entire work be under the scope of the GNU General Public License. This special + exception permission is also extended to any software listed in the SPECIAL GPL + EXCEPTION clauses by the PMG, FEtk, MC, or MALOC libraries. + + Note that people who make modified versions of APBS are not obligated + to grant this special exception for their modified versions; it is + their choice whether to do so. The GNU General Public License gives + permission to release a modified version without this exception; this + exception also makes it possible to release a modified version which + carries forward this exception. + +On Debian systems, the complete text of the GNU General +Public License can be found in `/usr/share/common-licenses/GPL'. --- apbs-1.0.0.orig/debian/apbs.install +++ apbs-1.0.0/debian/apbs.install @@ -0,0 +1,7 @@ +debian/tmp/usr/bin/* usr/bin/ +doc/user-guide usr/share/doc/apbs/html/ +doc/tutorial usr/share/doc/apbs/html/ +doc/index.html usr/share/doc/apbs/html/ +doc/license usr/share/doc/apbs/html/ + +debian/lintian-overrides/apbs usr/share/lintian/overrides/ --- apbs-1.0.0.orig/debian/rules +++ apbs-1.0.0/debian/rules @@ -0,0 +1,26 @@ +#!/usr/bin/make -f + +include /usr/share/cdbs/1/class/autotools.mk +include /usr/share/cdbs/1/rules/buildcore.mk +include /usr/share/cdbs/1/rules/debhelper.mk +include /usr/share/cdbs/1/rules/dpatch.mk + +FFLAGS = -Wall -g +FFLAGS += $(DEB_OPT_FLAG) + +DEB_CONFIGURE_EXTRA_FLAGS := --prefix=/usr +# because of a bug in the confifgure script, --enable-tools will *disable* +# building the tools (sf.net #1910799); however turn it off now, because +# tools/arpack/ardriv.f will lead to an FTBFS (sf.net #1910846) +DEB_CONFIGURE_EXTRA_FLAGS += --disable-tools +DEB_CONFIGURE_EXTRA_FLAGS += --with-fetk-include=/usr/include --with-fetk-library=/usr/lib +DEB_CONFIGURE_EXTRA_FLAGS += --with-blas=-lblas --with-arpack=/usr/lib +DEB_CONFIGURE_EXTRA_FLAGS += --with-mpich=/usr/lib/mpich +DEB_CONFIGURE_SCRIPT_ENV += CC="/usr/bin/mpicc.mpich" F77="/usr/bin/mpif77.mpich" FFLAGS="$(FFLAGS)" +DEB_MAKE_INSTALL_TARGET := -C $(CURDIR)/bin install DESTDIR=$(CURDIR)/debian/tmp +DEB_MAKE_CHECK_TARGET := -C $(CURDIR)/examples/ test APBS=$(CURDIR)/bin/apbs APBSBIN=$(CURDIR)/bin/apbs + +DEB_INSTALL_MANPAGES_apbs := debian/apbs.1 + +clean:: + rm -f tools/manip/psize.pyc --- apbs-1.0.0.orig/debian/apbs.1 +++ apbs-1.0.0/debian/apbs.1 @@ -0,0 +1,37 @@ +.TH "APBS" "1" "21 Feb 2008" "apbs" "User Commands" +.SH NAME +abps \- Adaptive Poisson Boltzmann Solver +.SH SYNOPSIS +.B apbs +.RB [ options ] +.I parameters-file +.SH DESCRIPTION +The \fBapbs\fR command calculates electrostatic potentials, energies, +and forces using both multigrid and finite element methods. +.SH OPTIONS +At the moment, the following options are supported: +.TP +.BI \-\-output\-file=< name > +Enables output logging to the path listed in <\fIname\fR>. Uses flat-file +format if \fB\-\-output\-format\fR is not used. +.TP +.BI \-\-output\-format=< type > +Specifies format for logging. Options for <\fItype\fR> are either "\fIxml\fR" +or "\fIflat\fR". +.TP +.B \-\-help +Display this help information. +.TP +.B \-\-version +Display the current \fBapbs\fR version. +.SH EXAMPLES +.B apbs apbs.in > apbs.out 2> apbs.err +.SH "SEE ALSO" +For more information read the user guide and/or the tutorial found at +.IR /usr/share/doc/apbs/html/index.html . +.SH AUTHORS +.B apbs +was written by Nathan A\. Baker <\&baker@biochem.wustl.edu\&>. +.PP +This manual page was written by Daniel Leidert <\&daniel.leidert@wgdd.de\&> +for the Debian project (but may be used by others). --- apbs-1.0.0.orig/debian/changelog_ +++ apbs-1.0.0/debian/changelog_ @@ -0,0 +1,112 @@ +apbs (1.0.0-1) UNRELEASED; urgency=low + + * NOT RELEASED YET + * New upstream release. + + No longer contains a corrupted tarball (closes: #473822). + * debian/patches/04_remove_install-exec-am_rule.dpatch: Refreshed. + * debian/patches/05_reduce_test_suite.dpatch: New patch, remove most of the + coordinates for the ion test to save time (closes: 475064). + + -- Daniel Leidert (dale) Mon, 17 Mar 2008 03:06:43 +0100 + +apbs (0.5.1-2) unstable; urgency=low + + * Acknowledge NMU 0.5.1-1.1 (closes: #462263). Thanks to Colin Tuckley. + + [ Daniel Leidert ] + * debian/apbs.1: Added. + * debian/apbs.doc-base (Section): Adjusted accordingly to latest doc-base + policy. + * debian/apbs.install: Install lintian override. + * debian/compat: Raised to level 5. + * debian/control: Homepage field transition. Added Vcs fields. Added + DM-Upload-Allowed field for DM status. + (Maintainer): Set to the debichem team address. Moved Michael to + Uploaders. + (Uploaders): Added myself and LI Daobing. + (Standards-Version): Updated to latest 3.7.3 (no other changes). + (Build-Depends): Raised debhelper to v5. Added libarpack2-dev. Added + libmpich1.0-dev for MPI support. Added python-minimal for some tests. + * debian/copyright: Fixed old-fsf-address-in-copyright-file issue. Updated + copyright information. Added exception. + * debian/rules: Install the newly added apbs.1 manpage. + (DEB_CONFIGURE_EXTRA_FLAGS): Enable building with arpack (not useful atm + without tools). Set prefix. + (DEB_CONFIGURE_EXTRA_FLAGS, DEB_CONFIGURE_SCRIPT_ENV): Enable MPI. + (DEB_MAKE_INSTALL_TARGET): Only install from bin/ as long as we don't use + the rest. + * debian/watch: Updated to fit new source archive naming. + * debian/lintian-overrides/apbs: Added. The documentation contains the + license in several formats. + + [ LI Daobing ] + * FTBFS if built twice in a row (Closes: #424100) + + -- Daniel Leidert (dale) Mon, 10 Mar 2008 08:46:53 +0100 + +apbs (0.5.1-1.1) unstable; urgency=low + + * Non-maintainer upload + * Build depend on libblas-dev instead of refblas3-dev (closes: #462263) + * Add gfortran to Build Depends: to fix FTBFS in clean chroot + + -- Colin Tuckley Mon, 28 Jan 2008 11:05:21 +0000 + +apbs (0.5.1-1) unstable; urgency=low + + * New upstream release. + + [ Daniel Leidert ] + * debian/control (Build-Depends): Added dpatch and autotools-dev. + (Standards-Version): Changed to latest standards version 3.7.2. + (Description): Added Homepage field. + * debian/copyright: Fixed download location after apbs has been moved to + sourceforge.net. + * debian/rules: Changed to use dpatch.mk instead of simple-patchsys.mk. + Added buildcore.mk ruleset. Added FFLAGS flags to configure. + * debian/watch: Added. + * debian/patches/01_html_documentation.dpatch: Added. Replaces + debian/patches/01_html_docu.patch. + * debian/patches/02_remove_vf2c.dpatch: Added. Replaces + debian/patches/02_remove_vf2c.patch. + * debian/patches/90_autoreconf.dpatch: Added. Replaces + debian/patches/90_autoreconf.patch. Probably closes: #424100. + * debian/patches/00list: Added. + + [ Michael Banck ] + * debian/patches/01_html_documentation: Updated. + * debian/patches/02_remove_vf2c: Removed; no longer needed. + * debian/patches/90_autoreconf: Likewise. + * debian/control (Build-Depends): Added bc, needed for the test suite. + * debian/rules (DEB_CONFIGURE_EXTRA_FLAGS): Added + --with-fetk-include=/usr/include --with-fetk-library=/usr/lib + --with-blas=-lblas. + * debian/rules (DEB_MAKE_CHECK_TARGET): New target, run the test suite. + * debian/patches/03_skip_expensive_tests.dpatch: New patch, skip tests which + take a lot of memory and CPU. + * debian/patches/04_remove_install-exec-am_rule.dpatch: New patch, remove + the install-exec-am rule from the top-level Makefile. We can just install + that data manually and it does not support DESTDIR anyway. + * debian/apbs.install: Updated location of the user's guide and tutorial in + the source tree. Install license.html as well. + + -- Michael Banck Wed, 18 Jul 2007 15:48:58 +0200 + +apbs (0.4.0-2) unstable; urgency=low + + * debian/patches: New directory, manage changes to upstream with + simple-patchsys.mk. + * debian/patches/01_html_docu.patch: New patch, supress link to the + programmer's manual we don't ship for now. + * debian/patches/02_remove_vf2c.patch: New patch, remove MALOC's own + -lvf2c f2c fork from linking. + * debian/patches/90_autoreconf.patch: Update libtool; closes: #378211. + + -- Michael Banck Sun, 10 Sep 2006 19:14:24 +0200 + +apbs (0.4.0-1) unstable; urgency=low + + * Initial release. + + -- Michael Banck Thu, 29 Jun 2006 17:10:18 +0200 + --- apbs-1.0.0.orig/debian/patches/01_html_documentation.dpatch +++ apbs-1.0.0/debian/patches/01_html_documentation.dpatch @@ -0,0 +1,24 @@ +#! /bin/sh /usr/share/dpatch/dpatch-run +## 01_html_documentation.dpatch by Michael Banck +## +## All lines beginning with `## DP:' are a description of the patch. +## DP: * doc/index.html: Supress link to the programmer's manual we don't ship +## DP: for now. +## DP: +## DP: + +@DPATCH@ +--- apbs/doc/index.html.orig 2007-01-30 14:55:18.000000000 +0100 ++++ apbs/doc/index.html 2007-07-18 14:38:19.000000000 +0200 +@@ -13,10 +13,9 @@ +

Documentation Index

+ + + + --- apbs-1.0.0.orig/debian/patches/03_skip_expensive_tests.dpatch +++ apbs-1.0.0/debian/patches/03_skip_expensive_tests.dpatch @@ -0,0 +1,25 @@ +#! /bin/sh /usr/share/dpatch/dpatch-run +## 03_skip_expensive_tests.dpatch by Michael Banck +## +## All lines beginning with `## DP:' are a description of the patch. +## DP: Skip tests which take a lot of memory and CPU. + +@DPATCH@ +--- apbs/examples/Makefile.in.orig 2007-07-17 18:06:39.000000000 +0200 ++++ apbs/examples/Makefile.in 2007-07-17 18:06:47.000000000 +0200 +@@ -278,13 +278,13 @@ + test: + rm -f TESTRESULTS.log + touch TESTRESULTS.log +- cd actin-dimer; make test; cat TESTRESULTS.log >> ../TESTRESULTS.log ++# cd actin-dimer; make test; cat TESTRESULTS.log >> ../TESTRESULTS.log + cd alkanes; make test; cat TESTRESULTS.log >> ../TESTRESULTS.log + cd born; make test; cat TESTRESULTS.log >> ../TESTRESULTS.log + cd FKBP; make test; cat TESTRESULTS.log >> ../TESTRESULTS.log + cd hca-bind; make test; cat TESTRESULTS.log >> ../TESTRESULTS.log + cd ion-pmf; make test; cat TESTRESULTS.log >> ../TESTRESULTS.log +- cd ion-protein; make test; cat TESTRESULTS.log >> ../TESTRESULTS.log ++# cd ion-protein; make test; cat TESTRESULTS.log >> ../TESTRESULTS.log + cd ionize; make test; cat TESTRESULTS.log >> ../TESTRESULTS.log + cd pka-lig; make test; cat TESTRESULTS.log >> ../TESTRESULTS.log + cd point-pmf; make test; cat TESTRESULTS.log >> ../TESTRESULTS.log --- apbs-1.0.0.orig/debian/patches/00list +++ apbs-1.0.0/debian/patches/00list @@ -0,0 +1,4 @@ +01_html_documentation.dpatch +03_skip_expensive_tests +04_remove_install-exec-am_rule +05_reduce_test_suite --- apbs-1.0.0.orig/debian/patches/04_remove_install-exec-am_rule.dpatch +++ apbs-1.0.0/debian/patches/04_remove_install-exec-am_rule.dpatch @@ -0,0 +1,23 @@ +#! /bin/sh /usr/share/dpatch/dpatch-run +## 04_remove_install-exec-am_rule.dpatch by Michael Banck +## +## All lines beginning with `## DP:' are a description of the patch. +## DP: Remove the install-exec-am rule from the top-level Makefile. We +## DP: can just install that data manually and it does not support +## DP: DESTDIR anyway. + +@DPATCH@ +--- apbs/Makefile.in.orig 2008-05-05 21:31:48.000000000 +0200 ++++ apbs/Makefile.in 2008-05-05 21:32:28.000000000 +0200 +@@ -663,11 +663,6 @@ + install-exec-local: + -rm -f ./bin/apbs + +-install-data-local: +- mkdir -p ${prefix}/share +- -cp -rf examples ${prefix}/share +- -cp -rf doc ${prefix}/share +- -cp -rf tools ${prefix}/share + # Tell versions [3.59,3.63) of GNU make to not export all variables. + # Otherwise a system limit (for SysV at least) may be exceeded. + .NOEXPORT: --- apbs-1.0.0.orig/debian/patches/05_reduce_test_suite.dpatch +++ apbs-1.0.0/debian/patches/05_reduce_test_suite.dpatch @@ -0,0 +1,23 @@ +#! /bin/sh /usr/share/dpatch/dpatch-run +## 05_reduce_test_suite.dpatch by Michael Banck +## +## All lines beginning with `## DP:' are a description of the patch. +## DP: Remove most of the coordinates for the ion test, to save time. + +@DPATCH@ +--- apbs/examples/ion-pmf/test.sh.orig 2008-05-05 21:24:47.000000000 +0200 ++++ apbs/examples/ion-pmf/test.sh 2008-05-05 21:27:19.000000000 +0200 +@@ -11,11 +11,9 @@ + nettime=0 + vsmall=0.000000001000 + +-coord='-3.000 -2.750 -2.500 -2.250 -2.000 -1.750 -1.50 -1.250 -1.00 -0.750 +--0.500 -0.250 0.000 0.250 0.500 0.750 1.000 1.250 1.500 1.750 2.000 +-2.250 2.500 2.750 3.000' ++coord='-3.000 -2.000 -1.00 0.000 1.000 2.000 3.000' + +-results=( -1.494109084160E+03 -1.479876455612E+03 -1.453172513724E+03 -1.424245632015E+03 -1.395864905308E+03 -1.369209804828E+03 -1.343413508063E+03 -1.319527942713E+03 -1.297718358292E+03 -1.275175527822E+03 -1.253921668205E+03 -1.232767208837E+03 -1.211966318316E+03 -1.190891678040E+03 -1.169410509835E+03 -1.146882791843E+03 -1.125192402906E+03 -1.105192440290E+03 -1.087409226682E+03 -1.071328983874E+03 -1.056724540553E+03 -1.043946032103E+03 -1.032072744366E+03 -1.021237490030E+03 -1.011312542835E+03 ) ++results=( -1.494109084160E+03 -1.395864905308E+03 -1.297718358292E+03 -1.211966318316E+03 -1.125192402906E+03 -1.056724540553E+03 -1.011312542835E+03 ) + + # Initialize the results file + --- apbs-1.0.0.orig/debian/lintian-overrides/apbs +++ apbs-1.0.0/debian/lintian-overrides/apbs @@ -0,0 +1,3 @@ +## the license is shipped as part of the documentation in various formats; +## just ignore it +apbs: extra-license-file