--- mgltools-gle-1.5.4.cvs.20090603.orig/debian/pycompat +++ mgltools-gle-1.5.4.cvs.20090603/debian/pycompat @@ -0,0 +1 @@ +2 --- mgltools-gle-1.5.4.cvs.20090603.orig/debian/README.source +++ mgltools-gle-1.5.4.cvs.20090603/debian/README.source @@ -0,0 +1,22 @@ +Any package of the MGLtools suite +================================= + +The URL presented in debian/watch guides to a tar file +as the source distribution of the MGLtools set. That tar file +has a subdirectory MGLPACKS that comprises many tar files +itself, each representing a distinguished Python module. + +For the packaging of the AutoDockTool kit, the maintainers +have decided to package each module individually, to foster +the collaboration between similar applications. + +The maintainers of the Debian package may decide to release +interim version from the upstream CVS source repository, +instead of waiting for an official release by the upstream +developers. + +For further details on how to prepare the source for the +packaging, please refer to +http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/BUILD?op=file&rev=0&sc=0 + + -- Steffen Moeller --- mgltools-gle-1.5.4.cvs.20090603.orig/debian/copyright +++ mgltools-gle-1.5.4.cvs.20090603/debian/copyright @@ -0,0 +1,135 @@ +This package was debianized by Steffen Moeller on +Thu, 10 Jul 2008 00:03:24 +0200 + +It was downloaded from http://mgltools.scripps.edu + +Upstream Authors: + + Linas Vepstas + +Copyright: + + Copyright 1990-2003 Linas Vepstas + and his employer IBM under the license stated below. + +License: + + From LICENSE + +This software is copyrighted by Michel F. Sanner (sanner@scripps.edu) and TSRI. +The following terms apply to all files associated with the software +unless explicitly disclaimed in individual files. + + MGLTOOLS SOFTWARE LICENSE AGREEMENT. + + 1. Grant Of Limited License; Software Use Restrictions. The programs + received by you will be used only for NON COMMERCIAL purposes. + This license is issued to you as an individual. + + For COMMERCIAL use done with the software please contact Michel F. + Sanner for details about commercial usage license agreements. + + For any question regarding license agreements, please contact + Michel Sanner: + TSRI, Molecular Biology Department, TCP 26, + 10550 North Torrey Pines Road, La Jolla, CA 92037 + sanner@scripps.edu + tel (858) 784-7742 + fax (858) 784-2341 + + 2. COMMERCIAL USAGE is defined as revenues generating activities. These + include using this software for consulting activities and selling + applications built on top of, or using this software. Scientific + research in an academic environment and teaching are considered + NON COMMERCIAL. + + 3. Copying Restrictions. You will not sell or otherwise distribute commercially + these programs or derivatives to any other party, whether with or without + consideration. + + 4. Ownership of Software. You will not obtain, and will not attempt to + obtain copyright coverage thereon without the express purpose written + consent of The Scripps Research Institute and Dr. Sanner. + + 5. IN NO EVENT SHALL THE AUTHORS OR DISTRIBUTORS BE LIABLE TO ANY PARTY + FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES + ARISING OUT OF THE USE OF THIS SOFTWARE, ITS DOCUMENTATION, OR ANY + DERIVATIVES THEREOF, EVEN IF THE AUTHORS HAVE BEEN ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + + 6. THE AUTHORS AND DISTRIBUTORS SPECIFICALLY DISCLAIM ANY WARRANTIES, + INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, + FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. THIS SOFTWARE + IS PROVIDED ON AN "AS IS" BASIS, AND THE AUTHORS AND DISTRIBUTORS HAVE + NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR + MODIFICATIONS. + + + From src/COPYING.src + + The following agreement applies to the source code in this directory + only! It does *NOT* apply to the HTML documentation or to the demo + programs, or to other items distributed with this package! + --------------------------------------------------------------------- + + SOFTWARE AGREEMENT + + PLEASE READ THIS AGREEMENT CAREFULLY BEFORE INSTALLING OR USING THIS + SOFTWARE. IF YOU INSTALL OR USE THIS SOFTWARE, YOU AGREE TO THESE + TERMS. + + This software is owned by International Business Machines Corporation + ("IBM"), or its subsidiaries or IBM's suppliers, and is copyrighted and + licensed, not sold. IBM retains title to the software, and grants you a + nonexclusive license for the software. + + Under this license, you may: + + 1) use the software on one or more machines at a time; + 2) make copies of the software for use or backup purposes within your + enterprise; + 3) modify this software and merge it with another program; and + 4) make copies of the original file you downloaded and distribute it, + provided that you transfer a copy of this license to the other party. + The other party agrees to these terms by its first use of this software. + + You must reproduce the copyright notice and any other legend of + ownership on each copy or partial copy of the software. + + This software, as provided by IBM, is only intended to assist in the + development of a working software program. The software may not function + as written: additional code is required. In addition, the software may + not compile and/or bind successfully as written. + + IBM PROVIDES THE SOFTWARE "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER + EXPRESS OR IMPLIED, INCLUDING, BUT NOT LIMITED TO THE IMPLIED WARRANTIES + OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK + AS TO THE QUALITY AND PERFORMANCE OF THE SOFTWARE IS WITH YOU. SHOULD + ANY PART OF THE SOFTWARE PROVE DEFECTIVE, YOU ASSUME THE ENTIRE COST OF + ALL NECESSARY SERVICING, REPAIR OR CORRECTION. IN NO EVENT, UNLESS + REQUIRED BY APPLICABLE LAW, SHALL IBM BE LIABLE TO YOU FOR DAMAGES, + INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES + ARISING OUT OF THE USE OR INABILITY TO USE THE SOFTWARE (INCLUDING BUT + NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES + SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE SOFTWARE TO + OPERATE WITH ANY OTHER PROGRAMS), EVEN IF IBM HAS BEEN ADVISED IN + ADVANCE OF THE POSSIBILITY OF SUCH DAMAGES. + + IBM does not warrant that the contents of the software will meet your + requirements, that the software is error-free or that the software does + not infringe on any intellectual property rights of any third party. + + IBM may make improvements and/or changes in the software at any time. + + Changes may or may not be made periodically to the information in the + software; these changes may be reported, for the software included + herein, in new editions. + + References, if any, in the software to IBM products, programs, or + services do not imply that IBM intends to make these available in all + countries in which IBM operates. Any reference to an IBM licensed + program in the software is not intended to state or imply that only + IBM's licensed program may be used. Any functionally equivalent program + may be used. + + The laws of New York State govern this agreement. --- mgltools-gle-1.5.4.cvs.20090603.orig/debian/watch +++ mgltools-gle-1.5.4.cvs.20090603/debian/watch @@ -0,0 +1,2 @@ +version=3 +http://mgltools.scripps.edu/downloads/.*mgltools_source_([0-9.]+)\.tar\.gz --- mgltools-gle-1.5.4.cvs.20090603.orig/debian/control +++ mgltools-gle-1.5.4.cvs.20090603/debian/control @@ -0,0 +1,24 @@ +Source: mgltools-gle +Section: non-free/libs +Priority: optional +Maintainer: Debian-Med Packaging Team +DM-Upload-Allowed: yes +XS-Autobuild: yes +Uploaders: Steffen Moeller , Sargis Dallakyan +Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4), swig (>= 1.3.20), python-all-dev, python-numpy, libglu1-mesa-dev, mesa-common-dev +Standards-Version: 3.8.1 +XS-Python-Version: >= 2.5 +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/gle/trunk/?rev=0&sc=0 +Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/mgltools/gle/trunk/ +Homepage: http://mgltools.scripps.edu/ + +Package: mgltools-gle +XB-Python-Version: ${python:Versions} +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, python-numpy, libglu1-mesa +Description: GLE library Python extension + This package is part of the mgltools set of Python libraries which + provide an infrastructure for the analysis of protein structures and + their docking of chemical compounds. + . + It provides a swig-generated interface to the GLE library. --- mgltools-gle-1.5.4.cvs.20090603.orig/debian/README.Debian +++ mgltools-gle-1.5.4.cvs.20090603/debian/README.Debian @@ -0,0 +1,27 @@ +autodocktools and other modules of MGLtools for Debian +====================================================== + +This package aims at providing the complete infrastructure for ligand +screening with Debian Linux. It is part of the MGL (Molecular Graphics +Labs at Scripps) Python tools set for the computational and visual +interaction of protein structures and their ligands. + +The Debian community shall thank Sargis Dallakyan +for his help in easing the compatibility with Debian by accepting our +patches and providing more himself. Also, the leader of the Molecular +Graphics Labs, Prof. Michael Sanner, is thanked for his support. + +Please be continously reminded that that closer a software gets towards +identifying or further describing functional compounds in medicine, +the harder it is to get access to free (as in beer) solutions. And it +certainly does not get much closer than with the AutoDockToolkit. To +have the AutoDockToolkit with Debian is special and good for the world +as it spawns the development of new drugs. We will need to wait a bit +longer for a DFSG compatible license, though. + +If you are a regular user of this package, your feedback to us +packagers would much appreciated. The packaging is organised +via the Debian-Med alioth project that has its own portal on +http://debian-med.alioth.debian.org. + + -- Steffen Moeller Sun, 20 Jul 2008 00:33:11 +0200 --- mgltools-gle-1.5.4.cvs.20090603.orig/debian/docs +++ mgltools-gle-1.5.4.cvs.20090603/debian/docs @@ -0,0 +1 @@ +src/README.gutil --- mgltools-gle-1.5.4.cvs.20090603.orig/debian/rules +++ mgltools-gle-1.5.4.cvs.20090603/debian/rules @@ -0,0 +1,20 @@ +#!/usr/bin/make -f +# -*- makefile -*- +# Sample debian/rules that uses debhelper. +# This file was originally written by Joey Hess and Craig Small. +# As a special exception, when this file is copied by dh-make into a +# dh-make output file, you may use that output file without restriction. +# This special exception was added by Craig Small in version 0.37 of dh-make. + +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + +export DEB_PYTHON_SYSTEM=pycentral + +include /usr/share/cdbs/1/rules/debhelper.mk +include /usr/share/cdbs/1/class/python-distutils.mk +#include /usr/share/cdbs/1/rules/simple-patchsys.mk + +clean:: + find . -name CVS -a -type d| xargs -r rm -r + rm -rf build build-stamp debian/Pmv --- mgltools-gle-1.5.4.cvs.20090603.orig/debian/changelog +++ mgltools-gle-1.5.4.cvs.20090603/debian/changelog @@ -0,0 +1,51 @@ +mgltools-gle (1.5.4.cvs.20090603-1.2) unstable; urgency=low + + * Non-maintainer upload. + * Build extension for all supported Python versions (closes: #586839) + + -- Piotr Ożarowski Wed, 30 Jun 2010 21:50:08 +0200 + +mgltools-gle (1.5.4.cvs.20090603-1.1) unstable; urgency=low + + * Non-maintainer upload. + * Move package to non-free due to non DFSG-free license, fix + debian/copyright accordingly. Patch from Scott Kitterman. + (Closes: #545515) + + -- Stefano Zacchiroli Sun, 20 Dec 2009 12:19:01 +0100 + +mgltools-gle (1.5.4.cvs.20090603-1) unstable; urgency=low + + * New upstream version. + + -- Steffen Moeller Wed, 03 Jun 2009 11:48:20 +0200 + +mgltools-gle (1.5.4.cvs.20090528-1) unstable; urgency=low + + * New upstream version. + + -- Steffen Moeller Sat, 16 May 2009 00:51:23 +0200 + +mgltools-gle (1.5.4.cvs.20090514-1) unstable; urgency=low + + * New upstream version. + + -- Steffen Moeller Thu, 14 May 2009 21:46:34 +0200 + +mgltools-gle (1.5.4.cvs.20081126-1) unstable; urgency=low + + * New upstream version. + + -- Steffen Moeller Wed, 26 Nov 2008 14:43:11 +0100 + +mgltools-gle (1.5.2.cvs.20081109-1) unstable; urgency=low + + * New upstream version. + + -- Steffen Moeller Sun, 09 Nov 2008 15:02:32 +0100 + +mgltools-gle (1.5.2.cvs.20080731-1) unstable; urgency=low + + * Initial release, contributes to closing ITP #458811. + + -- Steffen Moeller Thu, 31 Jul 2008 21:59:58 +0200 --- mgltools-gle-1.5.4.cvs.20090603.orig/debian/compat +++ mgltools-gle-1.5.4.cvs.20090603/debian/compat @@ -0,0 +1 @@ +5