/* -*- mia-c++  -*-
 *
 * This file is part of MIA - a toolbox for medical image analysis 
 * Copyright (c) Leipzig, Madrid 1999-2015 Gert Wollny
 *
 * MIA is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 3 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with MIA; if not, see <http://www.gnu.org/licenses/>.
 *
 */

#ifndef mia_3d_transform_spline_hh
#define mia_3d_transform_spline_hh

#include <mia/3d/interpolator.hh>
#include <mia/3d/transform.hh>
#include <mia/3d/ppmatrix.hh>
#include <mia/3d/splinetransformpenalty.hh>


NS_MIA_BEGIN


class EXPORT_3D C3DSplineTransformation: public C3DTransformation {
public:
	using C3DTransformation::operator ();

	C3DSplineTransformation(const C3DSplineTransformation& org);
	C3DSplineTransformation(const C3DBounds& range, PSplineKernel kernel, const C3DInterpolatorFactory& ipf, P3DSplineTransformPenalty penalty);
	C3DSplineTransformation(const C3DBounds& range, PSplineKernel kernel, const C3DFVector& c_rate, 
				const C3DInterpolatorFactory& ipf, P3DSplineTransformPenalty penalty);
	~C3DSplineTransformation(); 

	void set_coefficients(const C3DFVectorfield& field);
	void set_coefficients_and_prefilter(const C3DFVectorfield& field);
	void reinit()const;
	C3DFVector apply( const C3DFVector& x) const;
	C3DFVector scale( const C3DFVector& x) const;

	virtual const C3DBounds& get_size() const;
	const C3DBounds& get_coeff_size() const;


	class EXPORT_3D iterator_impl: public C3DTransformation::iterator_impl  {
	public:
		iterator_impl(const C3DBounds& pos, const C3DBounds& size, 
			      C3DFVectorfield::const_iterator value_it); 
		iterator_impl(const C3DBounds& pos, const C3DBounds& begin, const C3DBounds& end, 
			      const C3DBounds& size, C3DFVectorfield::const_iterator value_it); 

	private: 
		virtual C3DTransformation::iterator_impl * clone() const; 
		virtual const C3DFVector&  do_get_value()const; 
		virtual void do_x_increment(); 
		virtual void do_y_increment(); 
		virtual void do_z_increment(); 

		C3DFVectorfield::const_iterator m_value_it; 
		C3DBounds m_delta; 

	};


	const_iterator begin() const;
	const_iterator end() const;
	const_iterator begin_range(const C3DBounds& begin, const C3DBounds& end) const; 
	const_iterator end_range(const C3DBounds& begin, const C3DBounds& end) const; 


	bool refine();

	virtual C3DTransformation *invert() const;
	virtual P3DTransformation do_upscale(const C3DBounds& size) const;
	virtual size_t degrees_of_freedom() const;
	virtual void update(float step, const C3DFVectorfield& a);
	virtual void translate(const C3DFVectorfield& gradient, CDoubleVector& params) const;
	virtual C3DFMatrix derivative_at(int x, int y, int z) const;
	virtual C3DFMatrix derivative_at(const C3DFVector& x) const; 
	virtual float get_max_transform() const;
	virtual CDoubleVector get_parameters() const;
	virtual void set_parameters(const CDoubleVector& params);
	virtual void set_identity();
	virtual float pertuberate(C3DFVectorfield& v) const;
	virtual float get_jacobian(const C3DFVectorfield& v, float delta) const;
	virtual C3DFVector operator () (const C3DFVector& x) const;
	virtual C3DBounds get_minimal_supported_image_size() const; 

	C3DFVector on_grid(const mia::C3DBounds& x) const; 

	C3DBounds get_enlarge() const; 
private:

	double do_get_energy_penalty_and_gradient(CDoubleVector& gradient) const;
	double do_get_energy_penalty() const;
	bool do_has_energy_penalty() const; 
	
	C3DFVector sum(const C3DBounds& start, 
		       const std::vector<double>& xweights, 
		       const std::vector<double>& yweights, 
		       const std::vector<double>& zweights) const;  
	
	typedef std::vector<std::pair<int, std::vector<float> > > CSplineDerivativeRow; 
	CSplineDerivativeRow get_derivative_row(size_t nin, size_t nout, double scale) const; 

	C3DSplineTransformation& operator = (const C3DSplineTransformation& org); 

	void init_grid()const; 
	C3DFVector interpolate(const C3DFVector& x) const; 

	virtual C3DTransformation *do_clone() const;
	C3DBounds m_range;
	C3DFVector m_target_c_rate;
	C3DFVectorfield m_coefficients;
	PSplineKernel m_kernel; 
	C3DBounds m_shift; 
	C3DBounds m_enlarge; 
	mutable C3DFVector m_scale;
	mutable C3DFVector m_inv_scale;
	mutable bool m_scales_valid;

	mutable std::vector<std::vector<double> > m_x_weights; 
	mutable std::vector<int> m_x_indices; 
	mutable std::vector<std::vector<double> > m_y_weights; 
	mutable std::vector<int> m_y_indices; 
	mutable std::vector<std::vector<double> > m_z_weights; 
	mutable std::vector<int> m_z_indices; 
	mutable CSplineDerivativeRow  m_mx; 
	mutable CSplineDerivativeRow  m_my; 
	mutable CSplineDerivativeRow  m_mz; 
	mutable bool m_grid_valid; 
	mutable P3DFVectorfield m_current_grid; 
	PSplineBoundaryCondition m_x_boundary; 
	PSplineBoundaryCondition m_y_boundary; 
	PSplineBoundaryCondition m_z_boundary; 
	
	mutable CMutex m_mutex; 

	P3DSplineTransformPenalty m_penalty; 
};

NS_MIA_END

#endif
