--- r-base-3.0.1.orig/debian/r-doc-html.doc-base.data
+++ r-base-3.0.1/debian/r-doc-html.doc-base.data
@@ -0,0 +1,9 @@
+Document: r-data
+Title: R Data Import/Export
+Author: R Core
+Abstract: This is a guide to importing and exporting data to and from R.
+Section: Science/Data Analysis
+
+Format: HTML
+Index: /usr/share/doc/r-doc-html/manual/R-data.html
+Files: /usr/share/doc/r-doc-html/manual/R-data.html
--- r-base-3.0.1.orig/debian/r-base-core-dbg.lintian
+++ r-base-3.0.1/debian/r-base-core-dbg.lintian
@@ -0,0 +1,2 @@
+r-base-core-dbg: file-missing-in-md5sums usr/lib/debug/usr/bin/Rscript
+r-base-core-dbg: file-missing-in-md5sums usr/lib/debug/usr/lib/R/bin/Rscript
--- r-base-3.0.1.orig/debian/r-base-dev.dirs
+++ r-base-3.0.1/debian/r-base-dev.dirs
@@ -0,0 +1 @@
+usr/share/R/debian/
--- r-base-3.0.1.orig/debian/arm-perl-regexp.patch
+++ r-base-3.0.1/debian/arm-perl-regexp.patch
@@ -0,0 +1,31 @@
+--- r-base-2.15.2.orig/src/library/tools/R/install.R
++++ r-base-2.15.2/src/library/tools/R/install.R
+@@ -54,7 +54,11 @@
+ SHLIB_EXT <- if (WINDOWS) ".dll" else {
+ ## can we do better?
+ mconf <- file.path(R.home(), paste0("etc", rarch), "Makeconf")
+- sub(".*= ", "", grep("^SHLIB_EXT", readLines(mconf), value = TRUE))
++ if (substr( Sys.info()["machine"], 1, 3) == "arm") { # arm has broken regexps in libc
++ sub(".*= ", "", grep("^SHLIB_EXT", readLines(mconf), value = TRUE), perl = TRUE)
++ } else {
++ sub(".*= ", "", grep("^SHLIB_EXT", readLines(mconf), value = TRUE))
++ }
+ }
+
+ options(warn = 1)
+@@ -1616,8 +1620,13 @@
+ mconf <- readLines(file.path(R.home(),
+ paste0("etc", Sys.getenv("R_ARCH")),
+ "Makeconf"))
+- SHLIB_EXT <- sub(".*= ", "", grep("^SHLIB_EXT", mconf, value = TRUE))
+- SHLIB_LIBADD <- sub(".*= ", "", grep("^SHLIB_LIBADD", mconf, value = TRUE))
++ if (substr( Sys.info()["machine"], 1, 3) == "arm") { # arm has broken regexps in libc
++ SHLIB_EXT <- sub(".*= ", "", grep("^SHLIB_EXT", mconf, value = TRUE), perl = TRUE)
++ SHLIB_LIBADD <- sub(".*= ", "", grep("^SHLIB_LIBADD", mconf, value = TRUE), perl = TRUE)
++ } else {
++ SHLIB_EXT <- sub(".*= ", "", grep("^SHLIB_EXT", mconf, value = TRUE))
++ SHLIB_LIBADD <- sub(".*= ", "", grep("^SHLIB_LIBADD", mconf, value = TRUE))
++ }
+ MAKE <- Sys.getenv("MAKE")
+ rarch <- Sys.getenv("R_ARCH")
+ } else {
--- r-base-3.0.1.orig/debian/r-base-core-dbg.dirs
+++ r-base-3.0.1/debian/r-base-core-dbg.dirs
@@ -0,0 +1 @@
+usr/share/lintian/overrides
--- r-base-3.0.1.orig/debian/README.mathlib
+++ r-base-3.0.1/debian/README.mathlib
@@ -0,0 +1,89 @@
+
+The Debian package r-mathlib provides the library of standalone mathematical
+functions from the GNU R sources.
+
+Please consult the header file Rmath.h for the full list of available
+functions, and see section "The R API", subection "Using these functions in
+your own code" from the "Writing R Extensions" manual (available in pdf, html
+and info in the r-doc-pdf, r-doc-html and r-doc-info packages, respectively)
+for their usage.
+
+A simple example is provided in the file test.c which, on a Debian system,
+can be built as
+ $ gcc test.c -o test_mathlib -lRmath -lm
+Running 'ldd test_mathlib' can verify that the library is linked dynamically.
+
+The full README for the source directory R-$VERSION/src/nmath/standalone is
+included below; you can safely ignore the part about building this library as
+it provided by the Debian r-mathlib package.
+
+ -- Dirk Eddelbuettel Thu, 13 Jun 2002 21:27:38 -0500
+
+
+----- file R-$VERSION/src/nmath/standalone/README below ---------------------
+
+If you have not yet made R, under Unix you must first configure R, and
+under Windows you need to set up almost all the tools to make R and
+then run (cd .../src/gnuwin32/fixed; make).
+
+
+Under Unix, making in this directory will make standalone libraries
+libRmath.a and libRmath.so. `make static' and `make shared' make
+just one of them.
+
+Under Windows, use make -f Makefile.win. This makes Rmath.dll with
+import library libRmath.a.
+
+NB: certain compilers are unable to do compile-time IEEE-754
+arithmetic and so cannot compile mlutils.c. The known example is
+Sun's cc. Use gcc for mlutils.c (or the whole library).
+
+
+To use the routines in your own C or C++ programs, include
+
+#define MATHLIB_STANDALONE
+#include
+
+and link against -lRmath. The example file test.c does nothing
+useful, but is provided to test the process. Note that you will
+probably not be able to run it unless you add the directory containing
+libRmath.so to the LD_LIBRARY_PATH.
+
+
+A little care is needed to use the random-number routines. You will
+need to supply the uniform random number generator
+
+ double unif_rand(void)
+
+or use the one supplied (and with a shared library or DLL you will
+have to use the one supplied, which is the Marsaglia-multicarry with
+an entry point
+
+ set_seed(unsigned int, unsigned int)
+
+to set its seeds).
+
+The facilties to change the normal random number generator are
+available through the constant N01_kind. This takes values
+from the enumeration type
+
+typedef enum {
+ KINDERMAN_RAMAGE,
+ AHRENS_DIETER,
+ BOX_MULLER
+} N01type;
+
+(and USER_NORM is not available).
+
+
+There is full access to R's handling of NaNs, Inf and -Inf via special
+versions of the macros and functions
+
+ ISNAN, R_FINITE, R_log, R_pow and R_pow_di
+
+and (extern) constants R_PosInf, R_NegInf and NA_REAL. These
+facilities work best on IEEE 754 machines, but are available for all.
+
+There is no support for R's notion of missing values, in particular
+not for NA_INTEGER nor the distinction between NA and NaN for doubles.
+
--- r-base-3.0.1.orig/debian/r-recommended.dirs
+++ r-base-3.0.1/debian/r-recommended.dirs
@@ -0,0 +1,2 @@
+usr/lib/R/library
+usr/share/lintian/overrides
--- r-base-3.0.1.orig/debian/simulate-buildd
+++ r-base-3.0.1/debian/simulate-buildd
@@ -0,0 +1,10 @@
+#!/bin/sh
+
+if [ ! -d debian ]
+then
+ echo "Needs to run from a build directory."
+fi
+fakeroot debian/rules clean
+debian/rules build
+fakeroot debian/rules binary-arch
+fakeroot debian/rules clean
--- r-base-3.0.1.orig/debian/R
+++ r-base-3.0.1/debian/R
@@ -0,0 +1,493 @@
+### Copyright (C) 2005-2011 Deepayan Sarkar
+###
+### This file provides programmable completion for R under the bash
+### shell. It is made available under the terms of the GNU General
+### Public License, version 2, or at your option, any later version,
+### incorporated herein by reference.
+###
+### This program is distributed in the hope that it will be
+### useful, but WITHOUT ANY WARRANTY; without even the implied
+### warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+### PURPOSE. See the GNU General Public License, available at
+### http://www.gnu.org/licenses/gpl.txt, for more details.
+
+
+### NOTE: This does NOT provide completion for commands within R, only
+### for R's command-line options. For example,
+###
+### R CMD build --f[TAB]
+###
+### will complete to --force and so on. In other words, this is
+### potentially useful (for the most part) to package developers, not
+### regular users.
+
+### NEWS: Updated for R 2.4.0 (October 2006)
+
+### BUGS: As it stands, this is far from perfect. Known bugs include:
+###
+### (1) file/directory name completion doesn't work when there is a ~
+### (1) in the name. Fortunately, in such situations, one can always
+### (1) fall back to standard completion by using M-/ instead of TAB
+###
+### (2) Not all mutually exclusive options are properly handled
+###
+### (3) Doesn't test for the existence of R before defining the
+### (3) completion function (not strictly a bug, but definitely not a
+### (3) good feature)
+
+
+### INSTALLATION AND USAGE: You need to first install and enable bash
+### completion on your system to use this script. See
+###
+### http://www.caliban.org/bash/index.shtml#completion
+###
+### to learn more about bash completion. On a modern Debian system,
+### all the necessary files are already installed by the bash package.
+### To enable it, just uncomment the following lines in your .bashrc
+###
+### # if [ "$PS1" -a -f /etc/bash_completion ]; then
+### # . /etc/bash_completion
+### # fi
+###
+### or to try it out in your current shell, type
+###
+### . /etc/bash_completion
+###
+### Once you are using bash completion, you can enable completion for
+### R by similarly sourcing this file. For permanent use, place it in
+### your $BASH_COMPLETION_DIR (/etc/bash_completion.d in Debian). If
+### you don't have access to do that, copy the contents of this file
+### in it's entirety to your ~/.bash_completion, which is sourced by
+### the bash_completion script.
+
+
+
+
+_R()
+{
+ local cur loneOpts helpOpts stdOpts argOpts versOpts cmds cmd furtherOpts
+ local fileNames dirNames i lastToken
+ # local IFS=$'\t\n'
+
+ COMPREPLY=()
+ cur=${COMP_WORDS[COMP_CWORD]}
+
+ loneOpts='--version RHOME'
+ versOpts='-v --version' # only on commands
+ helpOpts='-h --help'
+
+ stdOpts='--save --no-save --no-environ --no-site-file \
+ --no-init-file --restore --no-restore-data --no-restore-history \
+ --no-restore --vanilla --no-readline -q --quiet --silent --slave \
+ --interactive --verbose -d -g --args -f -e'
+
+ ## these should end with a '=' and not be followed by a space.
+ ## Unfortunately, I haven't figured out how to make that work.
+ ## -nospace doesn't suppress the space, and if I add = at the end,
+ ## they get completed as "--debugger\= " etc. Anyway, they are
+ ## kept separate in anticipation of some future fix...
+
+ argOpts='--min-vsize --max-vsize --min-nsize --max-nsize \
+ --encoding --max-ppsize --debugger --debugger-args \
+ --gui --arch --file'
+
+ cmds='BATCH COMPILE SHLIB INSTALL REMOVE build check LINK Rprof \
+ Rdconv Rd2pdf Rd2txt Stangle Sweave Rdiff config javareconf rtags'
+
+
+
+
+ fileNames='' # possible to have files in certain commands (e.g. BATCH)
+ dirNames=''
+
+
+ if [[ $COMP_CWORD -eq 1 ]] ; then
+ COMPREPLY=(
+ $( compgen -W "CMD $loneOpts $helpOpts $stdOpts" -- $cur )
+ $( compgen -o nospace -W "$argOpts" -- $cur )
+ )
+ return 0
+ fi
+
+ ## certain tokens preclude further activity
+ if [[ ${COMP_WORDS[$COMP_CWORD-1]} == @(-v|--version|RHOME|-h|--help) ]] ; then
+ return 0
+ fi
+
+ ## more complicated stuff
+ ## keep last token for use later
+ lastToken=${COMP_WORDS[$COMP_CWORD-1]}
+
+
+ ## if [[ $COMP_CWORD -gt 1 ]] && (implied)
+ if [[ ${COMP_WORDS[1]} == "CMD" ]] ; then
+
+ if [[ $COMP_CWORD -eq 2 ]] ; then
+ COMPREPLY=(
+ $( compgen -W "$cmds" -- $cur )
+ )
+ return 0
+ else
+
+ ## COMP_CWORD >= 3. cmd=${COMP_WORDS[2]} is (hopefully)
+ ## one of $cmds. At this point, all further options
+ ## (except -v|-h|RHOME etc handled above) will be assumed
+ ## repeatable (except for duplicates and exclusives, to be
+ ## handled later). In the next step, possible completions
+ ## for each cmd will be derived.
+
+ ## A largely similar derivation is also needed for the
+ ## case when ${COMP_WORDS[2]} is not CMD. A similar
+ ## completion list will be derived in that case.
+ ## Afterwards, things will be removed from these as
+ ## needed, before the final COMPREPLY is computed.
+
+ cmd=${COMP_WORDS[2]}
+ case $cmd in
+ BATCH)
+
+ ## if last word is a filename (not starting with
+ ## -) then no more options are allowed, but can be
+ ## followed by any file (outfile)
+
+ if [[ $COMP_CWORD -gt 3 ]] && \
+ [[ $lastToken != -* ]] ; then
+
+ furtherOpts=""
+ fileNames=$( compgen -f -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ else
+
+ furtherOpts="$versOpts $helpOpts $stdOpts $argOpts --no-timing"
+ fileNames=$( compgen -f -X '!*.@(R|r|S|s)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ fi
+ ;;
+
+ COMPILE)
+ if [[ $COMP_CWORD -gt 3 ]] && \
+ [[ $lastToken != -* ]] ; then
+
+ furtherOpts=""
+ fileNames=$( compgen -f -X '!*.@(c|cc|cpp|C|f)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ else
+
+ furtherOpts="$versOpts $helpOpts -D"
+ fileNames=$( compgen -f -X '!*.@(c|cc|cpp|C|f)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ fi
+ ;;
+
+ SHLIB)
+ if [[ $COMP_CWORD -gt 3 ]] && \
+ [[ $lastToken != -* ]] ; then
+
+ furtherOpts=""
+ fileNames=$( compgen -f -X '!*.@(a|o)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ else
+
+ furtherOpts="$versOpts $helpOpts -o --output -c --clean \
+ --preclean -n --dry-run"
+ fileNames=$( compgen -f -X '!*.@(a|o)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ fi
+
+ ;;
+
+ INSTALL)
+ if [[ $COMP_CWORD -gt 3 ]] && \
+ [[ $lastToken == @(-l|--library) ]] ; then
+
+ furtherOpts=""
+ dirNames=$( compgen -d -- "$cur" )
+
+ else
+
+ furtherOpts="$versOpts $helpOpts \
+--configure-args --configure-vars -c --clean --preclean -d --debug -l \
+--library --no-configure --no-docs --html --no-html --latex --example \
+--fake --no-lock --lock --pkglock --build --install-tests --no-R, \
+--no-libs --no-data --no-help --no-demo --no-exec --no-inst \
+--no-multiarch --libs-only --data-compress --resave-data \
+--compact-docs --with-keep.source --without-keep.source --byte-compile \
+--no-clean-on-error"
+ fileNames=$( compgen -f -X '!*.@(tar.gz|tgz)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ fi
+ ;;
+
+ REMOVE)
+ furtherOpts="$versOpts $helpOpts -l --library"
+ if [[ $COMP_CWORD -gt 3 ]] && \
+ [[ $lastToken == @(-l|--library) ]] ; then
+ dirNames=$( compgen -d -- "$cur" )
+ fi
+ ;;
+
+ build)
+
+ furtherOpts="$versOpts $helpOpts \
+--force --keep-empty-dirs --no-vignettes --no-manual --resave-data \
+--no-resave-data --compact-vignettes"
+ dirNames=$( compgen -d -- "$cur" )
+ ;;
+
+ check)
+
+ furtherOpts="$versOpts $helpOpts \
+-l --library -o --outdir \
+--no-clean --no-codoc --no-examples --no-install --no-tests \
+--no-manual --no-vignettes --no-rebuild-vignettes --use-gct \
+--use-valgrind --timings --install-args --check-subdirs \
+--extra-arch --multiarch --no-multiarch --force-multiarch"
+
+ fileNames=$( compgen -f -X '!*.@(tar.gz|tgz)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+ ;;
+
+ LINK)
+ furtherOpts="$versOpts $helpOpts"
+ ;;
+
+ Rprof)
+ furtherOpts="$versOpts $helpOpts --total --self --min%total --min%self"
+ fileNames=$( compgen -f -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+ ;;
+
+ Rdconv)
+
+ furtherOpts="$versOpts $helpOpts -t --type \
+ --encoding --package -o --output --os --OS"
+
+ fileNames=$( compgen -f -X '!*.@(Rd)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+ ;;
+
+ Rd2pdf)
+
+ furtherOpts="$versOpts $helpOpts --batch \
+ --no-clean --no-preview --encoding --outputEncoding \
+ --os --OS -o --output --force --title \
+ --no-index --no-description --internals"
+
+ fileNames=$( compgen -f -X '!*.@(Rd)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+ ;;
+
+ Rd2txt)
+ furtherOpts="$versOpts $helpOpts -t --type --encoding --package -o --output --os --OS"
+ fileNames=$( compgen -f -X '!*.@(Rd)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+ ;;
+
+ Sweave)
+
+ ## if last word is a filename (not starting with
+ ## -) then nothing more is allowed
+
+ if [[ $COMP_CWORD -gt 3 ]] && \
+ [[ $lastToken != -* ]] ; then
+
+ return 0
+
+ else
+
+ furtherOpts="$versOpts $helpOpts --driver --encoding --options --pdf"
+ fileNames=$( compgen -f -X '!*.@(Rnw|rnw|Snw|snw)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ fi
+ ;;
+
+ Stangle)
+
+ ## if last word is a filename (not starting with
+ ## -) then nothing more is allowed
+
+ if [[ $COMP_CWORD -gt 3 ]] && \
+ [[ $lastToken != -* ]] ; then
+
+ return 0
+
+ else
+
+ furtherOpts="$versOpts $helpOpts --encoding --options"
+ fileNames=$( compgen -f -X '!*.@(Rnw|rnw|Snw|snw)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ fi
+ ;;
+
+ config)
+
+ if [[ $COMP_CWORD -gt 3 ]] ; then
+
+ return 0
+
+ else
+
+ furtherOpts="$versOpts $helpOpts --ldflags --cppflags \
+BLAS_LIBS CC CFLAGS CPICFLAGS CPP CPPFLAGS CXX CXXCPP CXXFLAGS \
+CXXPICFLAGS DYLIB_EXT DYLIB_LD DYLIB_LDFLAGS F77 FFLAGS FLIBS \
+FPICFLAGS FC FCFLAGS FCPICFLAGS JAR JAVA JAVAC JAVAH JAVA_HOME \
+JAVA_LIBS JAVA_CPPFLAGS LAPACK_LIBS LIBnn LDFLAGS OBJC OBJCFLAGS MAKE \
+SAFE_FFLAGS SHLIB_CFLAGS SHLIB_CXXLD SHLIB_CXXLDFLAGS SHLIB_EXT \
+SHLIB_FFLAGS SHLIB_LD SHLIB_LDFLAGS SHLIB_FCLD, SHLIB_FCLDFLAGS \
+TCLTK_CPPFLAGS TCLTK_LIBS"
+
+ fi
+ ;;
+
+
+ javareconf)
+ furtherOpts="$versOpts $helpOpts -n --dry-run -e"
+ ;;
+
+
+ rtags)
+ furtherOpts="$versOpts $helpOpts -o --output --no-c --no-R \
+ --no-Rd -a --append -V --verbose"
+ dirNames=$( compgen -d -- "$cur" )
+ ;;
+
+ esac
+
+ fi
+
+ elif [[ $lastToken == "<" ]] ; then
+
+ ## R [options] <
+ furtherOpts=""
+ fileNames=$( compgen -f -X '!*.@(R|r|S|s)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ elif [[ $lastToken == ">" ]] ; then
+
+ ## R [options] >
+ furtherOpts=""
+ fileNames=$( compgen -f -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ else
+
+ case $lastToken in
+
+ -g|--gui)
+ furtherOpts="X11 Tk"
+ ;;
+ -d|--debugger) ## allow commands
+ furtherOpts=$( compgen -c -- "$cur" )
+ ;;
+
+ *) ## NOT 'R CMD ': see comments above
+ furtherOpts="$versOpts $helpOpts $stdOpts $argOpts" ;;
+
+ esac
+ fi
+
+ ## need some removal,
+
+ ## take out options already given
+ for (( i=1; i<=$COMP_CWORD-1; ++i )) ; do
+
+ opt=${COMP_WORDS[$i]}
+
+ case $opt in
+ --*) optBase=${opt/=*/} ;;
+ -*) optBase=${opt:0:2} ;;
+ esac
+
+ ## can't seem to do this using case
+ if [[ $opt == "<" ]] ; then
+ ## no more args allowed
+ furtherOpts=""
+ elif [[ $opt == ">" ]] ; then
+ ## no more args allowed
+ furtherOpts=""
+ fi
+
+
+ allOpts=" $furtherOpts "
+ allOpts=${allOpts/ ${optBase} / }
+
+ #echo $allOpts
+
+ ## take out alternatives and mutually exclusives
+ case $optBase in
+
+# not working
+# "<") ## only filenames allowed
+# echo "-----------"
+# allOpts=">" ;;
+# ">") ## only filenames allowed
+# allOpts="<" ;;
+
+ -q|--quiet|--silent)
+ allOpts=${allOpts/ -q / }
+ allOpts=${allOpts/ --quiet / }
+ allOpts=${allOpts/ --silent / }
+ #echo $allOpts
+
+ ;;
+ --save|--no-save)
+ allOpts=${allOpts/ --save / }
+ allOpts=${allOpts/ --no-save / }
+ ;;
+ --vanilla)
+ allOpts=${allOpts/ --no-save / }
+ allOpts=${allOpts/ --no-restore / }
+ allOpts=${allOpts/ --no-site-file / }
+ allOpts=${allOpts/ --no-init-file / }
+ allOpts=${allOpts/ --no-environ / }
+ ;;
+ -d) allOpts=${allOpts/ --debugger / } ;;
+ --debugger) allOpts=${allOpts/ -d / } ;;
+ --restore) allOpts=${allOpts/ --no-restore / } ;;
+ --no-restore) allOpts=${allOpts/ --restore / } ;;
+ -g|--gui)
+ allOpts=${allOpts/ -g / }
+ allOpts=${allOpts/ --gui / }
+ ;;
+
+ BATCH)
+ allOpts=${allOpts/ --restore / }
+ allOpts=${allOpts/ --save / }
+ allOpts=${allOpts/ --no-readline / }
+ ;;
+
+ esac
+
+ done
+
+ ## and finally:
+
+ COMPREPLY=(
+ $( compgen -W "$allOpts $fileNames $dirNames" -- $cur )
+ )
+ return 0
+
+
+}
+
+
+complete -F _R -o filenames R
+
+## Add more aliases here, e.g.
+
+# for e in R-2.4 R-devel R-patched; do complete -F _R -o filenames ${e}; done
+
+
+
+### Local variables:
+### mode: shell-script
+### End:
--- r-base-3.0.1.orig/debian/build-help.pl
+++ r-base-3.0.1/debian/build-help.pl
@@ -0,0 +1,27 @@
+#!/usr/bin/perl -w
+#
+# Under Debian, R add-on packages (i.e. any of the r-cran-* packages)
+# used to call 'build-help.pl' in postinst and postrm:
+# /usr/bin/R CMD perl /usr/lib/R/share/perl/build-help.pl --htmllists
+#
+# However, R changed upstream and html help indices are created on the fly
+# when the user calls help.start() from within R. With that, the call above
+# is no longer needed and has been phased out in most but not yet all of
+# the postinst and postrm scripts.
+#
+# Moreover, starting with R 2.2.1-3, architecture-independent files are placed
+# below /usr/share/R/ --- breaking the call above. 2.2.1-4 introduced a
+# symbolic link from /usr/share/R/share to /usr/lib/R/share which works
+# on fresh installs but fails on upgrades from older versions of the R
+# package as dpkg cannot replace an existing directory with a softlink.
+#
+# Hence the need for this empty script to provide a place holder until
+# all r-cran-*, r-omegahat-*, r-other-*, ... packages have been updated.
+#
+# Dirk Eddelbuettel 06 Feb 2005
+#
+
+use strict;
+
+print STDERR "Ignoring deprecated call to build-help.pl from postinst or postrm script.\n";
+exit 0;
--- r-base-3.0.1.orig/debian/r-base-latex.lintian
+++ r-base-3.0.1/debian/r-base-latex.lintian
@@ -0,0 +1 @@
+r-base-latex: extra-license-file usr/lib/R/library/base/latex/license.tex
--- r-base-3.0.1.orig/debian/r-doc-pdf.links
+++ r-base-3.0.1/debian/r-doc-pdf.links
@@ -0,0 +1,10 @@
+usr/share/R/doc/manual/R-admin.pdf usr/share/doc/r-doc-pdf/manual/R-admin.pdf
+usr/share/R/doc/manual/R-data.pdf usr/share/doc/r-doc-pdf/manual/R-data.pdf
+usr/share/R/doc/manual/R-exts.pdf usr/share/doc/r-doc-pdf/manual/R-exts.pdf
+usr/share/R/doc/manual/R-FAQ.pdf usr/share/doc/r-doc-pdf/manual/R-FAQ.pdf
+usr/share/R/doc/manual/R-intro.pdf usr/share/doc/r-doc-pdf/manual/R-intro.pdf
+usr/share/R/doc/manual/R-ints.pdf usr/share/doc/r-doc-pdf/manual/R-ints.pdf
+usr/share/R/doc/manual/R-lang.pdf usr/share/doc/r-doc-pdf/manual/R-lang.pdf
+usr/share/R/doc/manual/refman.pdf usr/share/doc/r-doc-pdf/manual/refman.pdf
+
+
--- r-base-3.0.1.orig/debian/shlibs.local
+++ r-base-3.0.1/debian/shlibs.local
@@ -0,0 +1,2 @@
+libtk8.4 0 tk8.4 (>= 8.4.16-2)
+libtcl8.4 0 tcl8.4 (>= 8.4.16-2)
--- r-base-3.0.1.orig/debian/watch
+++ r-base-3.0.1/debian/watch
@@ -0,0 +1,5 @@
+# format version number, currently 2; this line is compulsory!
+version=2
+
+# This is one format for an HTTP site, which is the same as the FTP format
+http://cran.r-project.org/src/base/R-2/R-([-0-9\.]*).tar.gz
--- r-base-3.0.1.orig/debian/r-base-core.menu
+++ r-base-3.0.1/debian/r-base-core.menu
@@ -0,0 +1,5 @@
+?package(r-base-core): \
+ needs="text" \
+ section="Applications/Science/Data Analysis" \
+ title="GNU R" \
+ command="/usr/bin/R"
--- r-base-3.0.1.orig/debian/r-cran.mk
+++ r-base-3.0.1/debian/r-cran.mk
@@ -0,0 +1,120 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+#
+# Generic debian/rules file for the Debian/GNU Linux r-cran-* packages
+#
+# Should be sufficient for Debianization of CRAN (http://cran.r-project.org)
+# packages. Note that you still need to provide the other files in debian/*,
+# in particular control, changelog and copyright.
+#
+# Copyright 2003-2013 by Dirk Eddelbuettel
+
+include /usr/share/cdbs/1/rules/debhelper.mk
+include /usr/share/cdbs/1/class/langcore.mk
+## include /usr/share/cdbs/1/rules/dpatch.mk
+## include /usr/share/cdbs/1/rules/simple-patchsys.mk
+
+# Check whether source format 3.0 (quilt) is used. If yes, do not include the conflicting simple-patchsys.mk
+formatfile := $(CURDIR)/debian/source/format
+format_3_quilt = $(shell if [ -f $(formatfile) ] ; then if grep -q '3.0[[:space:]]*(quilt)' $(formatfile) ; then echo 1 ; else echo 0 ; fi else echo 0 ; fi )
+ifeq ($(format_3_quilt),0)
+ include /usr/share/cdbs/1/rules/simple-patchsys.mk
+endif
+
+# awk command to extract word after Package or Bundle, not lowercased
+awkString := "'/^(Package|Bundle):/ {print $$2 }'"
+
+# apply it to the upstream meta-info file DESCRIPTION, also generate a lc version
+cranNameOrig := $(shell awk "$(awkString)" DESCRIPTION)
+#cranName := $(shell echo "$(cranNameOrig)" | tr A-Z a-z | tr . -)
+cranName := $(shell echo "$(cranNameOrig)" | tr A-Z a-z)
+
+## if no debRreposname is known, set default to cran -- thanks, Steffen!
+ifeq ($(debRreposname),)
+ debRreposname := cran
+endif
+
+## we can define additional flags for R's make, eg "CXXFLAGS=-g0" for
+## RQuantLib but the default is empty
+## makeFlags :=
+## if makeFlags are defined, then we'll use them in this variable
+## which would otherwise be empty
+ifneq ($(makeFlags),)
+ makeFlagsCall := MAKEFLAGS=$(makeFlags)
+endif
+
+## and use the results to build the Debian'ized package name
+package := r-$(debRreposname)-$(cranName)
+
+## awk command to extract word after Priority
+prioritystr := "'/^Priority:/ {print tolower($$2) }'"
+priority := $(shell awk "$(prioritystr)" DESCRIPTION)
+
+ifeq ($(priority),recommended)
+ debRdir := usr/lib/R/library
+else
+ debRdir := usr/lib/R/site-library
+endif
+
+## current R version in Debian, with thanks to Charles Plessy for the dpkg-query call
+#rversion := $(shell zcat /usr/share/doc/r-base-dev/changelog.Debian.gz | \
+# dpkg-parsechangelog -l- --count 1 | \
+# awk '/^Version/ {print $$2}')
+rversion := $(shell dpkg-query -W -f='$${Version}' r-base-dev)
+
+## we use these results for the to-be-installed-in directory
+debRlib := $(CURDIR)/debian/$(package)/$(debRdir)
+
+## optional installation of a lintian silencer
+lintiandir := $(CURDIR)/debian/$(package)/usr/share/lintian/overrides
+
+common-install-indep:: R_any_arch
+common-install-arch:: R_any_arch
+
+R_any_arch:
+ ## create the target directory
+ dh_installdirs $(debRdir)
+ ##
+ ## support ${R:Depends} via debian/${package}.substvars
+ echo "R:Depends=r-base-core (>= ${rversion})" >> debian/$(package).substvars
+ ##
+ ## call R to install the sources we're looking at
+ ## use this inside xvfb-run if this wrapper is installed
+ if test -f /usr/bin/xvfb-run; then \
+ $(makeFlagsCall) xvfb-run -a \
+ R CMD INSTALL -l $(debRlib) --clean \
+ $(extraInstallFlags) . ; \
+ else \
+ $(makeFlagsCall) R CMD INSTALL -l $(debRlib) \
+ --clean $(extraInstallFlags) . ;\
+ fi
+ ## remove extra files which are present in some packages
+ rm -vf $(debRlib)/R.css \
+ $(debRlib)/$(cranNameOrig)/COPYING \
+ $(debRlib)/$(cranNameOrig)/LICENSE.txt
+ ## if we have an overrides file for lintian, install it
+ if test -f debian/overrides; then \
+ install -d $(lintiandir) ; \
+ install -m 0644 debian/overrides \
+ $(lintiandir)/$(package); \
+ fi
+
+## clean target from patch by Steffen Moeller on 16 May 2009
+clean::
+ ## the re-invocation of a build process should not
+ ## leave a footprint in Debian's diff.gz.
+ if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+ rm -f config.log config.status
+ ## the configure file is provided by upstream but
+ ## could be recreated by a call to 'autoconf'.
+ #if [ -r configure.in ]; then \
+ # rm -f configure \
+ #fi
+ ##
+ # if [ -r src/Makevars.in ]; then \
+ # rm -f src/Makevars; \
+ # fi
+
--- r-base-3.0.1.orig/debian/r-base-core.shlibs
+++ r-base-3.0.1/debian/r-base-core.shlibs
@@ -0,0 +1 @@
+libR 1 r-base-core (>= 2.9.2)
--- r-base-3.0.1.orig/debian/r-doc-info.files
+++ r-base-3.0.1/debian/r-doc-info.files
@@ -0,0 +1 @@
+usr/share/info/
--- r-base-3.0.1.orig/debian/README.debian
+++ r-base-3.0.1/debian/README.debian
@@ -0,0 +1,13 @@
+r-base for DEBIAN
+----------------------
+
+This Debian package was created from the sources on the Comprehensive R Archive
+Network sites. The master site is http://cran.r-project.org/
+
+Douglas Bates , Wed, 10 Dec 1997 14:17:31 -0600
+
+The executable is called R.
+
+In accordance with the Debian package policy, the executable,
+/usr/lib/R/bin/R.binary, has been stripped. Trying to use the --debugger
+option to R may not be as useful as hoped.
--- r-base-3.0.1.orig/debian/r-doc-html.links
+++ r-base-3.0.1/debian/r-doc-html.links
@@ -0,0 +1,7 @@
+usr/share/R/doc/manual/R-admin.html usr/share/doc/r-doc-html/manual/R-admin.html
+usr/share/R/doc/manual/R-data.html usr/share/doc/r-doc-html/manual/R-data.html
+usr/share/R/doc/manual/R-exts.html usr/share/doc/r-doc-html/manual/R-exts.html
+usr/share/R/doc/manual/R-FAQ.html usr/share/doc/r-doc-html/manual/R-FAQ.html
+usr/share/R/doc/manual/R-intro.html usr/share/doc/r-doc-html/manual/R-intro.html
+usr/share/R/doc/manual/R-ints.html usr/share/doc/r-doc-html/manual/R-ints.html
+usr/share/R/doc/manual/R-lang.html usr/share/doc/r-doc-html/manual/R-lang.html
--- r-base-3.0.1.orig/debian/libR.conf
+++ r-base-3.0.1/debian/libR.conf
@@ -0,0 +1,2 @@
+# make libR.so and libRlapack.so visible to ld.so
+/usr/lib/R/lib
--- r-base-3.0.1.orig/debian/r-mathlib.lintian
+++ r-base-3.0.1/debian/r-mathlib.lintian
@@ -0,0 +1,3 @@
+r-mathlib: non-dev-pkg-with-shlib-symlink usr/lib/libRmath.so.1.0.0 usr/lib/libRmath.so
+r-mathlib: missing-depends-line
+r-mathlib: package-name-doesnt-match-sonames libRmath1
--- r-base-3.0.1.orig/debian/R.bash_completion
+++ r-base-3.0.1/debian/R.bash_completion
@@ -0,0 +1,493 @@
+### Copyright (C) 2005-2011 Deepayan Sarkar
+###
+### This file provides programmable completion for R under the bash
+### shell. It is made available under the terms of the GNU General
+### Public License, version 2, or at your option, any later version,
+### incorporated herein by reference.
+###
+### This program is distributed in the hope that it will be
+### useful, but WITHOUT ANY WARRANTY; without even the implied
+### warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+### PURPOSE. See the GNU General Public License, available at
+### http://www.gnu.org/licenses/gpl.txt, for more details.
+
+
+### NOTE: This does NOT provide completion for commands within R, only
+### for R's command-line options. For example,
+###
+### R CMD build --f[TAB]
+###
+### will complete to --force and so on. In other words, this is
+### potentially useful (for the most part) to package developers, not
+### regular users.
+
+### NEWS: Updated for R 2.4.0 (October 2006)
+
+### BUGS: As it stands, this is far from perfect. Known bugs include:
+###
+### (1) file/directory name completion doesn't work when there is a ~
+### (1) in the name. Fortunately, in such situations, one can always
+### (1) fall back to standard completion by using M-/ instead of TAB
+###
+### (2) Not all mutually exclusive options are properly handled
+###
+### (3) Doesn't test for the existence of R before defining the
+### (3) completion function (not strictly a bug, but definitely not a
+### (3) good feature)
+
+
+### INSTALLATION AND USAGE: You need to first install and enable bash
+### completion on your system to use this script. See
+###
+### http://www.caliban.org/bash/index.shtml#completion
+###
+### to learn more about bash completion. On a modern Debian system,
+### all the necessary files are already installed by the bash package.
+### To enable it, just uncomment the following lines in your .bashrc
+###
+### # if [ "$PS1" -a -f /etc/bash_completion ]; then
+### # . /etc/bash_completion
+### # fi
+###
+### or to try it out in your current shell, type
+###
+### . /etc/bash_completion
+###
+### Once you are using bash completion, you can enable completion for
+### R by similarly sourcing this file. For permanent use, place it in
+### your $BASH_COMPLETION_DIR (/etc/bash_completion.d in Debian). If
+### you don't have access to do that, copy the contents of this file
+### in it's entirety to your ~/.bash_completion, which is sourced by
+### the bash_completion script.
+
+
+
+
+_R()
+{
+ local cur loneOpts helpOpts stdOpts argOpts versOpts cmds cmd furtherOpts
+ local fileNames dirNames i lastToken
+ # local IFS=$'\t\n'
+
+ COMPREPLY=()
+ cur=${COMP_WORDS[COMP_CWORD]}
+
+ loneOpts='--version RHOME'
+ versOpts='-v --version' # only on commands
+ helpOpts='-h --help'
+
+ stdOpts='--save --no-save --no-environ --no-site-file \
+ --no-init-file --restore --no-restore-data --no-restore-history \
+ --no-restore --vanilla --no-readline -q --quiet --silent --slave \
+ --interactive --verbose -d -g --args -f -e'
+
+ ## these should end with a '=' and not be followed by a space.
+ ## Unfortunately, I haven't figured out how to make that work.
+ ## -nospace doesn't suppress the space, and if I add = at the end,
+ ## they get completed as "--debugger\= " etc. Anyway, they are
+ ## kept separate in anticipation of some future fix...
+
+ argOpts='--min-vsize --max-vsize --min-nsize --max-nsize \
+ --encoding --max-ppsize --debugger --debugger-args \
+ --gui --arch --file'
+
+ cmds='BATCH COMPILE SHLIB INSTALL REMOVE build check LINK Rprof \
+ Rdconv Rd2pdf Rd2txt Stangle Sweave Rdiff config javareconf rtags'
+
+
+
+
+ fileNames='' # possible to have files in certain commands (e.g. BATCH)
+ dirNames=''
+
+
+ if [[ $COMP_CWORD -eq 1 ]] ; then
+ COMPREPLY=(
+ $( compgen -W "CMD $loneOpts $helpOpts $stdOpts" -- $cur )
+ $( compgen -o nospace -W "$argOpts" -- $cur )
+ )
+ return 0
+ fi
+
+ ## certain tokens preclude further activity
+ if [[ ${COMP_WORDS[$COMP_CWORD-1]} == @(-v|--version|RHOME|-h|--help) ]] ; then
+ return 0
+ fi
+
+ ## more complicated stuff
+ ## keep last token for use later
+ lastToken=${COMP_WORDS[$COMP_CWORD-1]}
+
+
+ ## if [[ $COMP_CWORD -gt 1 ]] && (implied)
+ if [[ ${COMP_WORDS[1]} == "CMD" ]] ; then
+
+ if [[ $COMP_CWORD -eq 2 ]] ; then
+ COMPREPLY=(
+ $( compgen -W "$cmds" -- $cur )
+ )
+ return 0
+ else
+
+ ## COMP_CWORD >= 3. cmd=${COMP_WORDS[2]} is (hopefully)
+ ## one of $cmds. At this point, all further options
+ ## (except -v|-h|RHOME etc handled above) will be assumed
+ ## repeatable (except for duplicates and exclusives, to be
+ ## handled later). In the next step, possible completions
+ ## for each cmd will be derived.
+
+ ## A largely similar derivation is also needed for the
+ ## case when ${COMP_WORDS[2]} is not CMD. A similar
+ ## completion list will be derived in that case.
+ ## Afterwards, things will be removed from these as
+ ## needed, before the final COMPREPLY is computed.
+
+ cmd=${COMP_WORDS[2]}
+ case $cmd in
+ BATCH)
+
+ ## if last word is a filename (not starting with
+ ## -) then no more options are allowed, but can be
+ ## followed by any file (outfile)
+
+ if [[ $COMP_CWORD -gt 3 ]] && \
+ [[ $lastToken != -* ]] ; then
+
+ furtherOpts=""
+ fileNames=$( compgen -f -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ else
+
+ furtherOpts="$versOpts $helpOpts $stdOpts $argOpts --no-timing"
+ fileNames=$( compgen -f -X '!*.@(R|r|S|s)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ fi
+ ;;
+
+ COMPILE)
+ if [[ $COMP_CWORD -gt 3 ]] && \
+ [[ $lastToken != -* ]] ; then
+
+ furtherOpts=""
+ fileNames=$( compgen -f -X '!*.@(c|cc|cpp|C|f)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ else
+
+ furtherOpts="$versOpts $helpOpts -D"
+ fileNames=$( compgen -f -X '!*.@(c|cc|cpp|C|f)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ fi
+ ;;
+
+ SHLIB)
+ if [[ $COMP_CWORD -gt 3 ]] && \
+ [[ $lastToken != -* ]] ; then
+
+ furtherOpts=""
+ fileNames=$( compgen -f -X '!*.@(a|o)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ else
+
+ furtherOpts="$versOpts $helpOpts -o --output -c --clean \
+ --preclean -n --dry-run"
+ fileNames=$( compgen -f -X '!*.@(a|o)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ fi
+
+ ;;
+
+ INSTALL)
+ if [[ $COMP_CWORD -gt 3 ]] && \
+ [[ $lastToken == @(-l|--library) ]] ; then
+
+ furtherOpts=""
+ dirNames=$( compgen -d -- "$cur" )
+
+ else
+
+ furtherOpts="$versOpts $helpOpts \
+--configure-args --configure-vars -c --clean --preclean -d --debug -l \
+--library --no-configure --no-docs --html --no-html --latex --example \
+--fake --no-lock --lock --pkglock --build --install-tests --no-R, \
+--no-libs --no-data --no-help --no-demo --no-exec --no-inst \
+--no-multiarch --libs-only --data-compress --resave-data \
+--compact-docs --with-keep.source --without-keep.source --byte-compile \
+--no-clean-on-error"
+ fileNames=$( compgen -f -X '!*.@(tar.gz|tgz)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ fi
+ ;;
+
+ REMOVE)
+ furtherOpts="$versOpts $helpOpts -l --library"
+ if [[ $COMP_CWORD -gt 3 ]] && \
+ [[ $lastToken == @(-l|--library) ]] ; then
+ dirNames=$( compgen -d -- "$cur" )
+ fi
+ ;;
+
+ build)
+
+ furtherOpts="$versOpts $helpOpts \
+--force --keep-empty-dirs --no-vignettes --no-manual --resave-data \
+--no-resave-data --compact-vignettes"
+ dirNames=$( compgen -d -- "$cur" )
+ ;;
+
+ check)
+
+ furtherOpts="$versOpts $helpOpts \
+-l --library -o --outdir \
+--no-clean --no-codoc --no-examples --no-install --no-tests \
+--no-manual --no-vignettes --no-rebuild-vignettes --use-gct \
+--use-valgrind --timings --install-args --check-subdirs \
+--extra-arch --multiarch --no-multiarch --force-multiarch"
+
+ fileNames=$( compgen -f -X '!*.@(tar.gz|tgz)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+ ;;
+
+ LINK)
+ furtherOpts="$versOpts $helpOpts"
+ ;;
+
+ Rprof)
+ furtherOpts="$versOpts $helpOpts --total --self --min%total --min%self"
+ fileNames=$( compgen -f -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+ ;;
+
+ Rdconv)
+
+ furtherOpts="$versOpts $helpOpts -t --type \
+ --encoding --package -o --output --os --OS"
+
+ fileNames=$( compgen -f -X '!*.@(Rd)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+ ;;
+
+ Rd2pdf)
+
+ furtherOpts="$versOpts $helpOpts --batch \
+ --no-clean --no-preview --encoding --outputEncoding \
+ --os --OS -o --output --force --title \
+ --no-index --no-description --internals"
+
+ fileNames=$( compgen -f -X '!*.@(Rd)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+ ;;
+
+ Rd2txt)
+ furtherOpts="$versOpts $helpOpts -t --type --encoding --package -o --output --os --OS"
+ fileNames=$( compgen -f -X '!*.@(Rd)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+ ;;
+
+ Sweave)
+
+ ## if last word is a filename (not starting with
+ ## -) then nothing more is allowed
+
+ if [[ $COMP_CWORD -gt 3 ]] && \
+ [[ $lastToken != -* ]] ; then
+
+ return 0
+
+ else
+
+ furtherOpts="$versOpts $helpOpts --driver --encoding --options --pdf"
+ fileNames=$( compgen -f -X '!*.@(Rnw|rnw|Snw|snw)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ fi
+ ;;
+
+ Stangle)
+
+ ## if last word is a filename (not starting with
+ ## -) then nothing more is allowed
+
+ if [[ $COMP_CWORD -gt 3 ]] && \
+ [[ $lastToken != -* ]] ; then
+
+ return 0
+
+ else
+
+ furtherOpts="$versOpts $helpOpts --encoding --options"
+ fileNames=$( compgen -f -X '!*.@(Rnw|rnw|Snw|snw)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ fi
+ ;;
+
+ config)
+
+ if [[ $COMP_CWORD -gt 3 ]] ; then
+
+ return 0
+
+ else
+
+ furtherOpts="$versOpts $helpOpts --ldflags --cppflags \
+BLAS_LIBS CC CFLAGS CPICFLAGS CPP CPPFLAGS CXX CXXCPP CXXFLAGS \
+CXXPICFLAGS DYLIB_EXT DYLIB_LD DYLIB_LDFLAGS F77 FFLAGS FLIBS \
+FPICFLAGS FC FCFLAGS FCPICFLAGS JAR JAVA JAVAC JAVAH JAVA_HOME \
+JAVA_LIBS JAVA_CPPFLAGS LAPACK_LIBS LIBnn LDFLAGS OBJC OBJCFLAGS MAKE \
+SAFE_FFLAGS SHLIB_CFLAGS SHLIB_CXXLD SHLIB_CXXLDFLAGS SHLIB_EXT \
+SHLIB_FFLAGS SHLIB_LD SHLIB_LDFLAGS SHLIB_FCLD, SHLIB_FCLDFLAGS \
+TCLTK_CPPFLAGS TCLTK_LIBS"
+
+ fi
+ ;;
+
+
+ javareconf)
+ furtherOpts="$versOpts $helpOpts -n --dry-run -e"
+ ;;
+
+
+ rtags)
+ furtherOpts="$versOpts $helpOpts -o --output --no-c --no-R \
+ --no-Rd -a --append -V --verbose"
+ dirNames=$( compgen -d -- "$cur" )
+ ;;
+
+ esac
+
+ fi
+
+ elif [[ $lastToken == "<" ]] ; then
+
+ ## R [options] <
+ furtherOpts=""
+ fileNames=$( compgen -f -X '!*.@(R|r|S|s)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ elif [[ $lastToken == ">" ]] ; then
+
+ ## R [options] >
+ furtherOpts=""
+ fileNames=$( compgen -f -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ else
+
+ case $lastToken in
+
+ -g|--gui)
+ furtherOpts="X11 Tk"
+ ;;
+ -d|--debugger) ## allow commands
+ furtherOpts=$( compgen -c -- "$cur" )
+ ;;
+
+ *) ## NOT 'R CMD ': see comments above
+ furtherOpts="$versOpts $helpOpts $stdOpts $argOpts" ;;
+
+ esac
+ fi
+
+ ## need some removal,
+
+ ## take out options already given
+ for (( i=1; i<=$COMP_CWORD-1; ++i )) ; do
+
+ opt=${COMP_WORDS[$i]}
+
+ case $opt in
+ --*) optBase=${opt/=*/} ;;
+ -*) optBase=${opt:0:2} ;;
+ esac
+
+ ## can't seem to do this using case
+ if [[ $opt == "<" ]] ; then
+ ## no more args allowed
+ furtherOpts=""
+ elif [[ $opt == ">" ]] ; then
+ ## no more args allowed
+ furtherOpts=""
+ fi
+
+
+ allOpts=" $furtherOpts "
+ allOpts=${allOpts/ ${optBase} / }
+
+ #echo $allOpts
+
+ ## take out alternatives and mutually exclusives
+ case $optBase in
+
+# not working
+# "<") ## only filenames allowed
+# echo "-----------"
+# allOpts=">" ;;
+# ">") ## only filenames allowed
+# allOpts="<" ;;
+
+ -q|--quiet|--silent)
+ allOpts=${allOpts/ -q / }
+ allOpts=${allOpts/ --quiet / }
+ allOpts=${allOpts/ --silent / }
+ #echo $allOpts
+
+ ;;
+ --save|--no-save)
+ allOpts=${allOpts/ --save / }
+ allOpts=${allOpts/ --no-save / }
+ ;;
+ --vanilla)
+ allOpts=${allOpts/ --no-save / }
+ allOpts=${allOpts/ --no-restore / }
+ allOpts=${allOpts/ --no-site-file / }
+ allOpts=${allOpts/ --no-init-file / }
+ allOpts=${allOpts/ --no-environ / }
+ ;;
+ -d) allOpts=${allOpts/ --debugger / } ;;
+ --debugger) allOpts=${allOpts/ -d / } ;;
+ --restore) allOpts=${allOpts/ --no-restore / } ;;
+ --no-restore) allOpts=${allOpts/ --restore / } ;;
+ -g|--gui)
+ allOpts=${allOpts/ -g / }
+ allOpts=${allOpts/ --gui / }
+ ;;
+
+ BATCH)
+ allOpts=${allOpts/ --restore / }
+ allOpts=${allOpts/ --save / }
+ allOpts=${allOpts/ --no-readline / }
+ ;;
+
+ esac
+
+ done
+
+ ## and finally:
+
+ COMPREPLY=(
+ $( compgen -W "$allOpts $fileNames $dirNames" -- $cur )
+ )
+ return 0
+
+
+}
+
+
+complete -F _R -o filenames R
+
+## Add more aliases here, e.g.
+
+# for e in R-2.4 R-devel R-patched; do complete -F _R -o filenames ${e}; done
+
+
+
+### Local variables:
+### mode: shell-script
+### End:
--- r-base-3.0.1.orig/debian/compat
+++ r-base-3.0.1/debian/compat
@@ -0,0 +1 @@
+7
--- r-base-3.0.1.orig/debian/r-gnome.preinst
+++ r-base-3.0.1/debian/r-gnome.preinst
@@ -0,0 +1,26 @@
+#! /bin/sh
+#
+# r-gnome.preinst
+#
+# Written and GPL'ed by Dirk Eddelbuettel
+
+set -e
+
+case "$1" in
+ install|upgrade)
+ # we want symlinks to r-base so old directories cannot exist
+ test -d /usr/share/doc/r-gnome && rm -rf /usr/share/doc/r-gnome
+ ;;
+
+ abort-upgrade)
+ ;;
+
+ *)
+ echo "preinst called with unknown argument \`$1'" >&2
+ exit 0
+ ;;
+esac
+
+#DEBHELPER#
+
+exit 0
--- r-base-3.0.1.orig/debian/r-recommended.links
+++ r-base-3.0.1/debian/r-recommended.links
@@ -0,0 +1 @@
+usr/share/doc/r-base-core usr/share/doc/r-recommended
--- r-base-3.0.1.orig/debian/r-doc-html.doc-base.ints
+++ r-base-3.0.1/debian/r-doc-html.doc-base.ints
@@ -0,0 +1,10 @@
+Document: r-ints
+Title: R Internals
+Author: R Core
+Abstract: This is a guide to the internal structures of R ("GNU S"), and the
+ coding standards for the core team working on R itself.
+Section: Science/Data Analysis
+
+Format: HTML
+Index: /usr/share/doc/r-doc-html/manual/R-ints.html
+Files: /usr/share/doc/r-doc-html/manual/R-ints.html
--- r-base-3.0.1.orig/debian/r-base-core.prerm
+++ r-base-3.0.1/debian/r-base-core.prerm
@@ -0,0 +1,26 @@
+#!/bin/sh
+#
+# prerm script for the Debian GNU/Linux r-base-core package
+# This version written by Dirk Eddelbuettel
+
+set -e
+
+#DEBHELPER#
+
+case "$1" in
+ remove|purge)
+ # edd 03 Apr 2003 cf Section 10.1.2 of Debian Policy
+ rmdir /usr/local/lib/R/site-library 2>/dev/null || true
+ rmdir /usr/local/lib/R/ 2>/dev/null || true
+ # edd 10 May 2009 cf Section 10.7.3 of Debian Policy
+ # and well as #527618
+ rm /etc/R/Renviron 2>/dev/null || true
+ ucf --purge /etc/R/Renviron
+ ucfr --purge r-base-core /etc/R/Renviron
+ ;;
+ upgrade|abort-upgrade|abort-remove|abort-deconfigure)
+ ;;
+ *)
+ echo "prerm called with unknown argument \`$1'" >&2
+ ;;
+esac
--- r-base-3.0.1.orig/debian/r-doc-html.doc-base.faq
+++ r-base-3.0.1/debian/r-doc-html.doc-base.faq
@@ -0,0 +1,10 @@
+Document: r-faq
+Title: R Frequently Asked Questions
+Author: R Core
+Abstract: This document contains answers to some of the most frequently asked
+ questions about R.
+Section: Science/Data Analysis
+
+Format: HTML
+Index: /usr/share/doc/r-doc-html/manual/R-FAQ.html
+Files: /usr/share/doc/r-doc-html/manual/R-FAQ.html
--- r-base-3.0.1.orig/debian/r-base-dev.preinst
+++ r-base-3.0.1/debian/r-base-dev.preinst
@@ -0,0 +1,26 @@
+#! /bin/sh
+#
+# r-base-dev.preinst
+#
+# Written and GPL'ed by Dirk Eddelbuettel
+
+set -e
+
+case "$1" in
+ install|upgrade)
+ # we want symlinks to r-base so old directories cannot exist
+ test -d /usr/share/doc/r-base-dev && rm -rf /usr/share/doc/r-base-dev
+ ;;
+
+ abort-upgrade)
+ ;;
+
+ *)
+ echo "preinst called with unknown argument \`$1'" >&2
+ exit 0
+ ;;
+esac
+
+#DEBHELPER#
+
+exit 0
--- r-base-3.0.1.orig/debian/r-doc-html.preinst
+++ r-base-3.0.1/debian/r-doc-html.preinst
@@ -0,0 +1,32 @@
+#!/bin/sh
+#
+# preinst script for the Debian GNU/Linux r-doc-html package
+# This version written by Dirk Eddelbuettel
+
+set -e
+
+#DEBHELPER#
+
+case "$1" in
+ install|upgrade)
+ # edd 05 Jul 2006 from with the /usr/lib -> /usr/share transition
+ # edd 12 Aug 2006 make sure it is a symlink and not a directory
+ # edd 29 Aug 2006 make sure $dir does not contain trailing slash
+ dir=/usr/share/doc/r-doc-html/manual
+ if [ -h $dir ]
+ then
+ echo "Removing symbolic link $dir"
+ rm $dir
+ fi
+ ;;
+
+ abort-upgrade)
+ ;;
+
+ *)
+ echo "preinst called with unknown argument \`$1'" >&2
+ ;;
+esac
+
+exit 0
+
--- r-base-3.0.1.orig/debian/r-gnome.links
+++ r-base-3.0.1/debian/r-gnome.links
@@ -0,0 +1 @@
+usr/share/doc/r-base-core usr/share/doc/r-gnome
--- r-base-3.0.1.orig/debian/r-recommended.files
+++ r-base-3.0.1/debian/r-recommended.files
@@ -0,0 +1,14 @@
+usr/lib/R/library/KernSmooth/
+usr/lib/R/library/MASS/
+usr/lib/R/library/class/
+usr/lib/R/library/nnet/
+usr/lib/R/library/spatial/
+usr/lib/R/library/boot/
+usr/lib/R/library/cluster/
+usr/lib/R/library/foreign/
+usr/lib/R/library/grid/
+usr/lib/R/library/lattice/
+usr/lib/R/library/mgcv/
+usr/lib/R/library/nlme/
+usr/lib/R/library/rpart/
+usr/lib/R/library/survival/
--- r-base-3.0.1.orig/debian/r-doc-html.files
+++ r-base-3.0.1/debian/r-doc-html.files
@@ -0,0 +1 @@
+usr/share/R/doc/manual/*.html
--- r-base-3.0.1.orig/debian/r-doc-html.doc-base.intro
+++ r-base-3.0.1/debian/r-doc-html.doc-base.intro
@@ -0,0 +1,17 @@
+Document: r-intro
+Title: R Introduction
+Author: R Core
+Abstract: This is an introduction to R ("GNU S"), a language and environment
+ for statistical computing and graphics. R is similar to the award-winning
+ S system, which was developed at Bell Laboratories by John Chambers et
+ al. It provides a wide variety of statistical and graphical techniques
+ (linear and nonlinear modelling, statistical tests, time series
+ analysis, classification, clustering, ...).
+ .
+ This manual provides information on data types, programming elements,
+ statistical modelling and graphics.
+Section: Science/Data Analysis
+
+Format: HTML
+Index: /usr/share/doc/r-doc-html/manual/R-intro.html
+Files: /usr/share/doc/r-doc-html/manual/R-intro.html
--- r-base-3.0.1.orig/debian/r-doc-pdf.files
+++ r-base-3.0.1/debian/r-doc-pdf.files
@@ -0,0 +1 @@
+usr/share/R/doc/manual/*.pdf
--- r-base-3.0.1.orig/debian/rules,v
+++ r-base-3.0.1/debian/rules,v
@@ -0,0 +1,758 @@
+head 1.3;
+access;
+symbols;
+locks
+ edd:1.3; strict;
+comment @# @;
+
+
+1.3
+date 2007.05.06.17.13.23; author edd; state Exp;
+branches;
+next 1.2;
+
+1.2
+date 2007.05.06.17.06.12; author edd; state Exp;
+branches;
+next 1.1;
+
+1.1
+date 2007.05.06.17.03.31; author edd; state Exp;
+branches;
+next ;
+
+
+desc
+@@
+
+
+1.3
+log
+@lots of cleanup
+@
+text
+@#!/usr/bin/make -f
+# debian/rules file for the Debian GNU/Linux r-base package
+# Copyright 1997-2007 by Douglas Bates
+# and Dirk Eddelbuettel
+#
+# $Id: rules,v 1.2 2007/05/06 17:06:12 edd Exp edd $
+
+corepackage = r-base-core
+devpackage = r-base-dev
+latexpackage = r-base-latex
+pdfpackage = r-doc-pdf
+htmlpackage = r-doc-html
+nmathpackage = r-mathlib
+infopackage = r-doc-info
+recdpackage = r-recommended
+
+# for the standalone library, no sonames are assigned in the upstream Makefiles
+somaj = 1
+somin = 0
+sorel = 0
+libver = $(somaj).$(somin).$(sorel)
+
+debbase := $(CURDIR)/debian
+debtmp := $(debbase)/$(corepackage)
+debdoc := $(debbase)/$(corepackage)/usr/share/doc/$(corepackage)
+debmat := $(debbase)/$(nmathpackage)
+debetc := $(debbase)/$(corepackage)/usr/lib/R/etc
+debinf := $(debbase)/$(infopackage)
+
+## edd 24 Oct 2005 use DEB_BUILD_GNU_CPU, not DEB_BUILD_GNU_TYPE
+## updated rules throughout
+arch := $(shell dpkg-architecture -qDEB_BUILD_GNU_CPU)
+buildarch := $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
+
+#export DH_VERBOSE = 1
+
+# edd 15 Aug 2001 default to blas, atlas can override it
+#atlas = --with-blas=blas
+# dmb 04 Apr 2003 better to use no specify blas
+# atlas = --with-blas
+# edd 28 Apr 2003 try configuring with atlas
+# atlas = --with-blas=atlas
+# edd 16 Oct 2003 back to older default
+#atlas = --with-blas=blas
+# edd 26 Feb 2004 point to refblas3
+atlas = --with-blas=-lblas-3
+
+# edd 08 Mar 2003 use the new lapack feature
+# edd 27 Apr 2003 Set this to =no as we currently see numerical errors
+#lapack = --with-lapack=no
+# edd 26 Feb 2004 point to lapack3
+#lapack = --with-lapack=-llapack-3
+# edd 13 Oct 2004 Set this once again to =no as we still see numerical errors
+lapack = --with-lapack=no
+
+# edd 02 Sep 2001 default to g77 but let m68k use f2c
+# edd 06 Mar 2003 enforce 3.2 versions explicitly
+# so that on testing we will pick them over 2.95
+# edd 07 Jun 2003 let's fall back to the default compilers
+# edd 08 Sep 2005 real defaults, i.e. remove -3.4 strings
+# edd 03 Apr 2006 switch to gfortran
+# edd 04 Apr 2006 use optimflags, build per-compiler flags later
+fortrancompiler = F77=gfortran
+compiler = gcc
+cxxcompiler = g++
+optimflags = -O3 -pipe
+
+# edd 04 Sep 2001 default compiler flags, lowered for m68k
+#compilerflags = -O2
+# m68k barks when using g77, and when gcc use -O2
+# edd 26 Nov 2002 switched back to g77
+# edd 02 Jun 2003 switched back
+# cts 04 Jun 2003 use -O1 on m68k
+#ifeq ($(arch),m68k)
+#fortrancompiler = F2C=f2c
+#compilerflags = -O1
+#endif
+
+# edd 14 Nov 2003 turn blas off on arm
+ifeq ($(arch),arm)
+atlas = --without-blas
+endif
+
+## edd 09 Nov 2001 ia64 needs gcc-3.0, hppa gets it by default
+#ifeq ($(arch),ia64)
+#fortrancompiler = F77=g77-3.0
+#compiler = gcc-3.0
+#cxxcompiler = g++-3.0
+#compilerflags = -O2
+#endif
+
+## lamont@@debian.org 06 Dec 2001 hppa needs -ffunction-sections
+ifeq ($(arch),hppa)
+optimflags = -O2 -ffunction-sections
+endif
+
+## edd 20 Jun 2002 no optimisation or debugging on baby systems
+## edd 02 Jun 2003 use this on arm only
+#ifneq "$(findstring $(arch), m68k arm)" ""
+ifneq "$(findstring $(arch), arm)" ""
+optimflags = -O0 -g0
+endif
+
+## edd 09 Apr 2006 per patch from Andreas Jochens in #361604
+ifeq ($(arch),powerpc64)
+optimflags += -mminimal-toc
+endif
+
+## edd 04 Apr 2006 generalize from old compilerflags to per-compiler
+cflags = -std=gnu99 $(optimflags)
+cxxflags = $(optimflags)
+fcflags = $(optimflags)
+
+## edd 17 Sep 2006 suggested by Brian Ripley in email dated 15 Sep 2006
+#ldflags = -Wl,-O1,-Bdirect,--hash-style=both
+# old call: ldflags = -Wl,-O1
+## edd 06 May 2007 try it
+ldflags = -Wl,-O1,-Bdirect,--hash-style=both
+
+maketest:
+ @@echo "Hi $(arch)"
+ @@echo "$(findstring $(arch), i486 hppa arm)"
+ifeq "$(findstring $(arch), hppa arm)" ""
+ @@echo "**** TRUE if the arch is NOT in the list as !find == '' ***"
+endif
+ifneq "$(findstring $(arch), i486 hppa arm)" ""
+ @@echo "**** TRUE if the arch is in list as find != '' is TRUE ***"
+endif
+ @@echo Bye
+
+get-orig-source: upstream
+upstream:
+ #links http://cran.us.r-project.org/src/base
+ links http://cran.r-project.org/src/base/?M=D
+
+upstreamdevel:
+ links ftp://ftp.stat.math.ethz.ch/Software/R
+ #links http://cran.us.r-project.org/src/base
+ #rsync -vaC rsync.r-project.org::r-devel .
+
+prerelease:
+ links http://cran.r-project.org/src/base-prerelease
+
+
+## edd 24 Oct 2003 build is invoked by the buildd, so we would prefer to
+## not imply build-indep; unfortunately R does not build
+## properly without it, so we have to stick with it
+## edd 15 Jan 2004 trying again on build only build: build-arch build-indep
+## the main hook is to then have binary depend on both
+## binary-arch and binary-indep, and those on their builds
+build: build-arch
+
+build-arch: make-arch
+
+build-indep: make-indep
+
+configure: configure-stamp
+configure-stamp:
+ @@echo "*** configure ***"
+
+ # we have to disable use of the expanded R_LD_LIBRARY_PATH as it
+ # conflicts with Debian's Atlas-can-replace-Blas scheme
+ # so set R_LD_LIBRARY_PATH to the minimal value R_HOME/bin
+ # and discard what configure finds for it on this machine
+ ## edd 06 May 2007 no longer used in R.sh.in
+ #perl -p -i -e 's|:\@@R_LD_LIBRARY_PATH\@@||' src/scripts/R.sh.in
+
+ dh_testdir
+ R_PAPERSIZE=letter \
+ R_BROWSER=sensible-browser \
+ PAGER=/usr/bin/pager \
+ PERL=/usr/bin/perl \
+ R_UNZIPCMD=/usr/bin/unzip \
+ R_ZIPCMD=/usr/bin/zip \
+ R_PRINTCMD=/usr/bin/lpr \
+ LIBnn=lib \
+ AWK=/usr/bin/awk \
+ CC=${compiler} \
+ CXX=${cxxcompiler} \
+ ${fortrancompiler} \
+ CPPFLAGS= \
+ LDFLAGS= \
+ FLIBS= \
+ rsharedir=/usr/share/R/share \
+ rincludedir=/usr/share/R/include \
+ rdocdir=/usr/share/R/doc \
+ ./configure --prefix=/usr \
+ --with-system-bzlib \
+ --with-jpeg \
+ --with-system-pcre \
+ --with-png \
+ --with-readline \
+ --with-tcltk \
+ --with-system-zlib \
+ --mandir=/usr/share/man \
+ --infodir=/usr/share/info \
+ --datadir=/usr/share/R/share \
+ --includedir=/usr/share/R/include \
+ $(atlas) \
+ $(lapack) \
+ --without-gnome \
+ --enable-R-profiling \
+ --enable-R-shlib \
+ --enable-memory-profiling \
+ --without-recommended-packages \
+ --build $(buildarch)
+
+ touch configure-stamp
+
+make-arch: configure make-arch-stamp
+make-arch-stamp:
+ @@echo "*** make-arch ***"
+ $(MAKE) CFLAGS="$(cflags)" \
+ CXXFLAGS="$(cxxflags)" \
+ FFLAGS="$(fcflags)" \
+ CC=${compiler} \
+ CXX=${cxxcompiler} \
+ ${fortrancompiler} \
+ LDFLAGS="$(ldflags)" \
+ R
+
+ # the top-level 'make stamp-recommended' target implies 'make docs'
+ # which (for the buildds) implies a lot of time wasted generating
+ # output we already take from the initial i386 build
+# $(MAKE) CFLAGS="$(compilerflags)" \
+# CXXFLAGS="$(compilerflags)" \
+# FFLAGS="$(compilerflags)" \
+# CC=${compiler} \
+# CXX=${cxxcompiler} \
+# ${fortrancompiler} \
+# stamp-recommended
+
+ # make standalone math lib
+ (cd src/nmath/standalone; \
+ $(MAKE) CFLAGS="$(cflags) -D_REENTRANT" \
+ CXXFLAGS="$(cxxflags) -D_REENTRANT" \
+ FFLAGS="$(fcflags) -D_REENTRANT" \
+ CC=${compiler} \
+ CXX=${cxxcompiler} \
+ ${fortrancompiler} \
+ all )
+
+ # edd 25 Jan 2004 make install needs html docs
+ # edd 03 Feb 2004 new test, try without
+ #make docs
+ # edd 15 Jan 2004 make install needs html docs
+ # edd 25 Jan 2004 not needed as we have 'make docs'
+ ## make html
+ $(MAKE) docs R_CMD_BUILD_HELP_OPTS="--txt --example"
+
+ touch make-arch-stamp
+
+make-indep: configure make-indep-stamp
+make-indep-stamp:
+ @@echo "*** make-indep ***"
+ ## edd 12 Jan 2004 uncommenting 'make docs' to split binary all/any
+ ## now that recommended packages aren't made
+ ## edd 25 Jan 2004 make docs and make html are made in make-arch
+ ## edd 05 Feb 2004 finally, this works in pre-1.9.0 with Kurt's
+ ## R_CMD_BUILD_HELP_OPTS
+ $(MAKE) docs
+ $(MAKE) html
+ $(MAKE) help
+ $(MAKE) info
+ $(MAKE) pdf
+ touch make-indep-stamp
+
+make: make-stamp
+make-stamp: make-arch make-indep
+
+check: make-arch check-stamp
+check-stamp:
+ @@echo "*** check ***"
+#ifneq ($(arch),arm)
+## edd 11 Oct 2005 also disable on hppa
+ifeq "$(findstring $(arch), hppa arm)" ""
+ -make check
+endif
+ touch check-stamp
+
+clean:
+ @@echo "*** clean ***"
+ dh_testdir
+ dh_testroot
+ rm -f configure-stamp \
+ build-stamp build-indep-stamp build-arch-stamp \
+ make-stamp make-arch-stamp make-indep-stamp \
+ install-indep-stamp install-arch-stamp \
+ check-stamp
+ -$(MAKE) distclean
+ -rm -f `find . -name "*~"`
+ -rm -rf debian/tmp debian/files* core debian/substvars
+ -rm -f doc/html/function.html doc/html/packages.html
+ -rm -f modules/*.so src/unix/Rscript
+ # left over in CVS from r-base --> r-base-core transition
+ #(cd debian; rm -vf r-base.dirs r-base.files r-base.lintian \
+ # r-base.menu r-base.postinst)
+ dh_clean
+
+install: install-arch install-indep
+
+install-arch: make-arch check install-arch-stamp
+install-arch-stamp:
+ @@echo "*** install-arch ***"
+ dh_testdir
+ dh_testroot
+ dh_clean -a -k
+ dh_installdirs -A
+ @@echo $(debtmp)
+
+ $(MAKE) DESTDIR=$(debtmp) install
+
+ (cd src/nmath/standalone; \
+ $(MAKE) DESTDIR=$(debtmp) install )
+
+ # fix permissions (Lintian)
+ # edd 15 Jan 2006 now under /usr/share/R
+ # edd 06 May 2007 seems this is no longer needed either
+# chmod a+x $(debtmp)/usr/share/R/share/sh/echo.sh \
+# $(debtmp)/usr/share/R/share/sh/help-links.sh \
+# $(debtmp)/usr/share/R/share/sh/help-print.sh
+
+ # remove unneeded license file, but link them back
+ rm -v $(debtmp)/usr/lib/R/COPYING
+ (cd $(debtmp)/usr/lib/R/; \
+ ln -s ../../share/common-licenses/GPL COPYING)
+ rm -v $(debtmp)/usr/share/R/doc/COPYING \
+ $(debtmp)/usr/share/R/doc/COPYING.LIB
+ (cd $(debtmp)/usr/share/R/doc; \
+ ln -s ../../../share/common-licenses/GPL COPYING; \
+ ln -s ../../../share/common-licenses/LGPL COPYING.LIB )
+
+ # edd 15 Jul 2002 reduce compile load on small machines
+#ifneq "$(findstring $(arch), m68k arm)" ""
+# perl -p -i -e 's/-g -O2/-g0 -O0/g' $(debtmp)/usr/lib/R/etc/Makeconf
+#endif
+
+ # edd 10 Jan 2003 fix Perl interpreter path
+ # edd 05 May 2005 no longer needed
+# (cd $(debtmp)/usr/lib/R/bin; \
+# for file in Rdconv Rprof Sd2Rd build check; do \
+# perl -p -i -e "s|/usr/local/bin/perl|/usr/bin/perl|" \
+# $${file}; \
+# done)
+
+ # edd 25 Sep 2005 link TeX files into texmf
+ # edd 03 Oct 2006 use link into /usr/share/, not /usr/lib/
+ (cd $(debtmp)/usr/share/texmf/tex/latex && \
+ ln -s ../../../R/share/texmf R)
+
+ # that being done, now install in different sub-packages
+
+ # move files for r-recommended
+
+ # move the html manual files in r-doc-html.files into r-doc-html
+ # these get built in make-arch too ...
+ dh_movefiles --sourcedir=debian/$(corepackage) -p$(htmlpackage)
+
+ # move files for r-base-html
+ dh_movefiles --sourcedir=debian/$(corepackage) -pr-base-html
+ # move files for r-base-latex
+ dh_movefiles --sourcedir=debian/$(corepackage) -pr-base-latex
+
+ make prefix=$(debtmp)/usr \
+ rdocdir=$(debtmp)/usr/share/R/doc \
+ install-pdf
+
+ # the indep package r-doc-info is made now
+ make prefix=$(debtmp)/usr \
+ infodir=$(debtmp)/usr/share/info install-info
+
+ # move the pdf manual files listed in r-doc-pdf.files into r-doc-pdf
+ dh_movefiles --sourcedir=debian/$(corepackage) -p$(pdfpackage)
+
+ # move the html manual files in r-doc-html.files into r-doc-html
+ dh_movefiles --sourcedir=debian/$(corepackage) -p$(htmlpackage)
+
+ touch install-indep-stamp
+ # edd 06 Dec 2006 lintian wants them compressed with -9, and R
+ # seems to pre-zip them lower
+ gunzip -9v $(debtmp)/usr/share/info/*.gz
+ # move files for r-doc-info
+ dh_movefiles --sourcedir=debian/$(corepackage) -p$(infopackage)
+ # deal with stupid automake / install-info issue (cf #235713)
+ rm -vf $(debinf)/usr/share/info/dir \
+ $(debinf)/usr/share/info/dir.old
+
+ # move all the rest into r-base-core
+ # edd 10 Sep 2005 no longer needed as we install into r-base-core
+ # dh_movefiles -p$(corepackage)
+
+ # for the standalone library package, move the two libs
+ # as 'make install' ignores these, we have to do it by hand
+ dh_installdirs -p$(nmathpackage) usr/include usr/lib \
+ usr/share/lintian/overrides \
+ usr/lib/pkgconfig
+ # move the libraries made and installed by R, and the pkgconfig file
+ dh_movefiles --sourcedir=debian/$(corepackage) -p$(nmathpackage)
+ # move the library to a lib*.so.major.0.0, then link
+ (cd $(debmat)/usr/lib; \
+ mv -v libRmath.so libRmath.so.$(libver); \
+ ln -sv libRmath.so.$(libver) libRmath.so.$(somaj); \
+ ln -sv libRmath.so.$(somaj) libRmath.so)
+ # and create a link for Rmath.h
+ # rather copy directly into the more independent package r-mathlib
+ install -m 0644 src/include/Rmath.h \
+ $(debmat)/usr/include
+
+ # now deal with $R_HOME/etc <--> /etc/R
+ # edd 03 Apr 2003 patch Renviron for new R_LIBS standard
+ # edd 24 Apr 2004 patch Renviron for R_PAPERSIZE (bug #245525)
+ # edd 16 Jun 2004 nope, doesn't work
+ # edd 09 Apr 2005 also move the new file repositories to /etc/R
+ # edd 24 Sep 2006 idem for ldpaths
+ (cd $(debetc); \
+ cat $(debbase)/Renviron-R_LIBS.patch | patch --verbose; \
+ mv Makeconf Renviron repositories ldpaths \
+ ../../../../etc/R/; \
+ ln -s /etc/R/Makeconf .; \
+ ln -s /etc/R/Renviron .; \
+ ln -s /etc/R/ldpaths .; \
+ ln -s /etc/R/repositories . )
+# cat $(debbase)/Renviron-R_PAPERSIZE.patch | patch --verbose;
+
+ # deal with build.help.pl's --htmllists argument
+ (cd $(debtmp)/usr/share/R/share/perl; \
+ cat $(debbase)/build-help.pl.patch | patch --verbose )
+
+ # edd 28 Sep 2006 patch javareconf to modify in /etc/R
+ (cd $(debtmp)/usr/lib/R/bin; \
+ cat $(debbase)/javareconf.patch | patch --verbose )
+
+ # edd 24 Jan 2006 deal with old postinst/postrm scripts
+ # calling the old /usr/lib/R/share/perl path
+ #(cd $(debtmp)/usr/lib/R && ln -s ../../share/R/share . )
+ # edd 06 Feb 2006 softlink fails with upgrades from older versions
+ dh_installdirs -p$(corepackage) usr/lib/R/share/perl
+ install -m 0644 debian/build-help.pl \
+ debian/$(corepackage)/usr/lib/R/share/perl/
+
+ # add tab completion by Deepayan
+ install -m 0644 debian/R.bash_completion \
+ debian/$(corepackage)/etc/bash_completion.d/R
+
+ # edd 02 May 2007 add libR.conf for ld.so
+ install -m 0644 debian/libR.conf \
+ debian/$(corepackage)/etc/ld.so.conf.d/libR.conf
+
+ touch install-arch-stamp
+
+#install-indep: make-arch make-indep install-arch install-indep-stamp
+install-indep: make-indep install-indep-stamp
+install-indep-stamp:
+ @@echo "*** install-indep ***"
+ dh_testdir
+ dh_testroot
+ dh_clean -a -k
+ dh_installdirs -A
+
+# make prefix=$(debtmp)/usr install-pdf
+#
+# # the indep package r-doc-info is made now
+# make prefix=$(debtmp)/usr \
+# infodir=$(debtmp)/usr/share/info install-info
+#
+# # move the pdf manual files listed in r-doc-pdf.files into r-doc-pdf
+# dh_movefiles -p$(pdfpackage)
+# # move the html manual files in r-doc-html.files into r-doc-html
+# dh_movefiles -p$(htmlpackage)
+# touch install-indep-stamp
+# # move files for r-doc-info
+# dh_movefiles -p$(infopackage)
+
+ # but clean up dir and old.dir
+ rm -vf $(debbase)/$(infopackage)/usr/share/info/dir \
+ $(debbase)/$(infopackage)/usr/share/info/dir.old
+
+ touch install-indep-stamp
+
+
+# Build architecture-independent files here.
+# edd 5 Feb 2004 binary-indep: build-indep install-indep
+binary-indep: build-indep install-indep
+ @@echo "*** binary-indep ***"
+ dh_testdir -i
+ dh_testroot -i
+ dh_link -i
+ #dh_installdebconf -i
+ dh_installdocs -i
+ #dh_installexamples -i
+ #dh_installmenu -i
+ #dh_installemacsen -i
+ #dh_installpam -i
+ #dh_installmime -i
+ #dh_installinit -i
+ #dh_installcron -i
+ #dh_installmanpages -i
+ #dh_installinfo -i
+ #dh_undocumented -i
+ dh_installchangelogs -i
+ # install lintian "silencer"
+ install -p -m 0644 debian/$(latexpackage).lintian \
+ $(debbase)/$(latexpackage)/usr/share/lintian/overrides/$(latexpackage)
+
+ dh_installdirs -p$(devpackage) usr/share/R/debian
+ install -p -m 0755 debian/r-cran.mk \
+ $(debbase)/$(devpackage)/usr/share/R/debian
+
+ dh_compress -i
+ dh_fixperms -i
+ #dh_suidregister -i
+ dh_installdeb -i
+ #dh_perl -i
+ dh_gencontrol -i
+ dh_md5sums -i -X'usr/bin/R'
+ dh_builddeb -i
+
+# Build architecture-dependent files here.
+binary-arch: build-arch check install-arch
+ @@echo "*** binary-arch ***"
+ dh_testdir -a
+ dh_testroot -a
+ #dh_installdebconf -a
+ #dh_link -a
+ # edd 04 Apr 2006 AUTHORS RESOURCES THANKS Y2K FAQ all gone
+ dh_installdocs -p$(corepackage) NEWS ONEWS OONEWS README \
+ debian/README.Atlas \
+ debian/README.mathlib
+ dh_installdocs -p$(nmathpackage) NEWS ONEWS OONEWS README \
+ debian/README.mathlib
+ #dh_installexamples -a
+ #dh_installexamples -p$(corepackage) src/nmath/standalone/test.c
+ dh_installexamples -p$(nmathpackage) src/nmath/standalone/test.c
+ dh_installmenu -a
+ #dh_installemacsen -a
+ #dh_installpam -a
+ #dh_installmime -a
+ #dh_installinit -a
+ #dh_installcron -a
+ #dh_installmanpages -a -p$(corepackage) getline.3
+ #dh_installman -p$(corepackage) doc/R.1
+ ## dh_installinfo -a -n doc/manual/R-*.info*
+ ## edd 04 Apr 2004 manual is dangling unless r-doc-pdf is installed ...
+ ##(cd $(debdoc)/doc && ln -s ../../../../lib/R/doc/html .)
+ ##(cd $(debdoc)/doc && ln -s ../../../../lib/R/doc/manual .)
+ # ... so install doc as a link, as we already did with library
+ # (cd $(debdoc) && ln -s ../../../lib/R/doc .)
+ (cd $(debdoc) && ln -s ../../R/doc .)
+ (cd $(debdoc) && ln -s ../../../lib/R/library .)
+ # install lintian "silencer"
+ install -p -m 0644 debian/$(corepackage).lintian \
+ $(debbase)/$(corepackage)/usr/share/lintian/overrides/$(corepackage)
+# install -p -m 0644 debian/$(recdpackage).lintian \
+# $(debbase)/$(recdpackage)/usr/share/lintian/overrides/$(recdpackage)
+ install -p -m 0644 debian/$(nmathpackage).lintian \
+ $(debbase)/$(nmathpackage)/usr/share/lintian/overrides/$(nmathpackage)
+ #dh_undocumented -a
+ dh_installchangelogs -a -k NEWS
+ dh_strip -a
+ dh_compress -a
+ dh_fixperms -a
+ #dh_suidregister -a
+ dh_makeshlibs -a
+ dh_installdeb -a
+ dh_perl -a
+ dh_shlibdeps -a
+# @@echo "*** Pruning shlibdeps result from double atlas entry ***"
+# cat debian/r-base-core.substvars
+# perl -p -i -e 's/atlas2-base, //' debian/r-base-core.substvars
+# cat debian/r-base-core.substvars
+# @@echo "*** Pruning atlas from r-recommended shlibdeps ***"
+# cat debian/r-recommended.substvars
+# perl -p -i -e 's/atlas2-base, //' debian/r-recommended.substvars
+# cat debian/r-recommended.substvars
+# echo "*** Done ***"
+ dh_gencontrol -a
+ dh_md5sums -a -X'usr/bin/R' -X'usr/bin/Rscript' \
+ -XLibIndex -Xindex.txt \
+ -Xfunction.html -Xpackages.html
+ dh_builddeb -a
+
+#binary: binary-indep binary-arch install-arch install-indep
+binary: make-stamp check binary-arch binary-indep
+
+.PHONY: build clean binary-indep binary-arch binary install install-arch install-indep
+@
+
+
+1.2
+log
+@removed gnome package entries
+@
+text
+@d6 1
+a6 1
+# $Id: rules,v 1.1 2007/05/06 17:03:31 edd Exp edd $
+a34 2
+
+
+a35 1
+#export DH_COMPAT = 4
+d116 3
+a118 1
+ldflags = -Wl,-O1
+d165 2
+a166 1
+ perl -p -i -e 's|:\@@R_LD_LIBRARY_PATH\@@||' src/scripts/R.sh.in
+a242 3
+# libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.$(somaj) \
+# )
+
+d296 2
+a297 2
+ #(cd debian; rm -vf r-base.dirs r-base.files r-base.lintian \
+ # r-base.menu r-base.postinst)
+a315 27
+# $(MAKE) prefix=$(debtmp)/usr \
+# mandir=$(debtmp)/usr/share/man \
+# rsharedir=$(debtmp)/usr/share/R/share \
+# rincludedir=$(debtmp)/usr/share/R/include \
+# rdocdir=$(debtmp)/usr/share/R/doc \
+# install
+
+ # link $R_HOME/bin/R to real one, and set R_HOME_DIR env.var.
+ # edd 05 Sep 2005 expand this to R_SHARE_DIR, R_INCLUDE_DIR, R_DOC_DIR
+ # edd 15 Jan 2006 now let those three point to /usr/share/R
+ # edd 05 May 2007 no longer needed as DESTDIR now supported
+# (cd $(debtmp)/usr/lib/R/bin/; \
+# ln -svf ../../../bin/R R; \
+# cd ../../../bin; \
+# perl -p -i -e \
+# 's|^R_HOME_DIR=.*|R_HOME_DIR=/usr/lib/R|;\
+# s|^R_SHARE_DIR=.*|R_SHARE_DIR=/usr/share/R/share|;\
+# s|^R_INCLUDE_DIR=.*|R_INCLUDE_DIR=/usr/share/R/include|;\
+# s|^R_DOC_DIR=.*|R_DOC_DIR=/usr/share/R/doc|' R)
+
+ # set browser to mozilla as mozilla-1.0.0 works with help.start()
+ # (we're now using /usr/bin/sensible-browser, see above)
+# (cd $(debtmp)/usr/lib/R/etc; \
+# perl -p -i -e \
+# "s|R_BROWSER-'.*'|R_BROWSER-'/usr/bin/mozilla'|" \
+# Renviron)
+
+d318 4
+a321 3
+ chmod a+x $(debtmp)/usr/share/R/share/sh/echo.sh \
+ $(debtmp)/usr/share/R/share/sh/help-links.sh \
+ $(debtmp)/usr/share/R/share/sh/help-print.sh
+a350 5
+ # edd 02 May 2007 fix includedir in libR.pc
+ (cd $(debtmp)/usr/lib/pkgconfig; \
+ perl -p -i -e "s|/usr/lib/R/include|/usr/share/R/include|" \
+ libR.pc )
+
+a353 2
+ # doing this before html/latex moves ensure they keep their tex/latex
+# dh_movefiles -p$(recdpackage)
+a396 4
+# install -m 0644 src/nmath/standalone/libRmath.a \
+# $(debmat)/usr/lib
+# install -m 0644 src/nmath/standalone/libRmath.so \
+# $(debmat)/usr/lib/libRmath.so.$(libver)
+a403 2
+# install -m 0644 src/nmath/standalone/libRmath.pc \
+# $(debmat)/usr/lib/pkgconfig/libRmath.pc
+a404 2
+ #(cd $(debmat)/usr/include; \
+ # ln -s ../lib/R/include/Rmath.h .)
+d408 1
+@
+
+
+1.1
+log
+@Initial revision
+@
+text
+@d6 1
+a6 1
+# $Id$
+a12 1
+gnomepackage = r-gnome
+a34 8
+# set this to 1 (default) if you want the Gnome GUI package
+# edd 27 Feb 2005 as of R 2.1.0, the Gnome GUI is no longer included
+gnome = 0
+ifeq ($(gnome),0)
+gnomeconfig = --without-gnome
+else
+gnomeconfig = --with-gnome
+endif
+d201 1
+a201 1
+ $(gnomeconfig) \
+a386 5
+ # move the GNOME version to the r-gnome package
+#ifeq ($(gnome),1)
+# dh_movefiles -p$(gnomepackage) usr/lib/R/modules/R_gnome.so
+#endif
+
+a429 3
+#ifeq ($(gnome),1)
+# dh_installdirs -p$(gnomepackage) usr/share/lintian/overrides
+#endif
+a520 4
+#ifeq ($(gnome),1)
+# dh_installdirs $(gnomepackage)
+# dh_installchangelogs -p$(gnomepackage)
+#endif
+d530 1
+a530 1
+ dh_link -i -N$(gnomepackage)
+a567 3
+#ifeq ($(gnome),1)
+# dh_link -p$(gnomepackage)
+#endif
+d583 1
+a583 1
+ #dh_installmanpages -a -N$(gnomepackage) -p$(corepackage) getline.3
+a599 4
+#ifeq ($(gnome),1)
+# install -p -m 0644 debian/$(gnomepackage).lintian \
+# $(debbase)/$(gnomepackage)/usr/share/lintian/overrides/$(gnomepackage)
+#endif
+@
--- r-base-3.0.1.orig/debian/override-bz2-version-check.patch
+++ r-base-3.0.1/debian/override-bz2-version-check.patch
@@ -0,0 +1,22 @@
+--- r-base-2.13.1.orig/configure
++++ r-base-2.13.1/configure
+@@ -32899,7 +32899,7 @@
+ #endif
+ int main() {
+ char *ver = BZ2_bzlibVersion();
+- exit(strcmp(ver, "1.0.6") < 0);
++ exit(0); /* edd: override, Debian's 1.0.5 is patched strcmp(ver, "1.0.6") < 0); */
+ }
+
+ _ACEOF
+--- r-base-2.13.1.orig/m4/R.m4
++++ r-base-2.13.1/m4/R.m4
+@@ -3049,7 +3049,7 @@
+ #endif
+ int main() {
+ char *ver = BZ2_bzlibVersion();
+- exit(strcmp(ver, "1.0.6") < 0);
++ exit(0); /* edd: override, Debian's 1.0.5 is patched strcmp(ver, "1.0.6") < 0); */
+ }
+ ]])], [r_cv_have_bzlib=yes], [r_cv_have_bzlib=no], [r_cv_have_bzlib=no])
+ LIBS="${r_save_LIBS}"
--- r-base-3.0.1.orig/debian/r-gnome.menu
+++ r-base-3.0.1/debian/r-gnome.menu
@@ -0,0 +1,4 @@
+?package(r-gnome):needs="x11" \
+ section="Apps/Math" \
+ title="GNU R (Gnome)" \
+ command="/usr/bin/R --gui=GNOME --no-save"
--- r-base-3.0.1.orig/debian/changelog
+++ r-base-3.0.1/debian/changelog
@@ -0,0 +1,3004 @@
+r-base (3.0.1-3) unstable; urgency=low
+
+ * debian/rules: Tweak the pdf creation to overcome error from missing
+ r-recommend packages sources which should be ignored, but is not
+
+ -- Dirk Eddelbuettel Sat, 25 May 2013 12:41:01 -0500
+
+r-base (3.0.1-2) unstable; urgency=low
+
+ * doc/manual: Apply changes from upstream (SVN revs 62773 + 62778) to
+ permit compilation of the manuals under both texinfo 4 and texinfo 5
+
+ * debian/rules: No longer temporarily disabled moving info files now
+ that they build correctly with texinfo 5 as well.
+
+ -- Dirk Eddelbuettel Thu, 23 May 2013 21:36:21 -0500
+
+r-base (3.0.1-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
+
+ * debian/rules: Temporarily disabled moving info files. Not all help
+ files will be built as a result. We are looking into this.
+
+ -- Dirk Eddelbuettel Thu, 16 May 2013 06:05:31 -0500
+
+r-base (3.0.1~20130512-1) unstable; urgency=low
+
+ * Initial rc build (r62731) of R 3.0.1 expected for May 16
+
+ * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
+
+ * debian/rules: Temporarily disabled moving info files
+
+ -- Dirk Eddelbuettel Sun, 12 May 2013 14:47:49 -0500
+
+r-base (3.0.0-2) unstable; urgency=low
+
+ * debian/r-cran.mk: Revert recent patch to convert '.' in package names
+ to '-' as it breaks existing packages (Closes: #704606)
+
+ -- Dirk Eddelbuettel Wed, 03 Apr 2013 10:26:43 -0500
+
+r-base (3.0.0-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
+
+ -- Dirk Eddelbuettel Wed, 03 Apr 2013 05:19:08 -0500
+
+r-base (3.0.0~20130330-1) unstable; urgency=low
+
+ * Second rc build (r62448) of R 3.0.0 expected for April 3
+
+ * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
+
+ -- Dirk Eddelbuettel Sat, 30 Mar 2013 23:34:53 -0500
+
+r-base (3.0.0~20130327-1) unstable; urgency=low
+
+ * Initial rc build (r62427) of R 3.0.0 expected for April 3
+
+ * debian/rules: Explicitly call 'make javaconf;
+
+ * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
+
+ -- Dirk Eddelbuettel Wed, 27 Mar 2013 20:02:31 -0500
+
+r-base (3.0.0~20130324-1) unstable; urgency=low
+
+ * Initial beta build (r62384) of R 3.0.0 expected for April 3
+
+ * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
+
+ -- Dirk Eddelbuettel Sun, 24 Mar 2013 08:54:05 -0500
+
+r-base (2.15.3-2) unstable; urgency=low
+
+ * debian/r-cran.mk: Applied patch by m.eik michalke to also convert '.'
+ in package names to '-'
+
+ * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp from 2.15.2
+ with big thanks to Luka Luca Falavigna (Closes: #702427)
+
+ -- Dirk Eddelbuettel Sun, 10 Mar 2013 10:04:12 -0500
+
+r-base (2.15.3-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ -- Dirk Eddelbuettel Fri, 01 Mar 2013 06:23:30 -0600
+
+r-base (2.15.3~20130327-1) unstable; urgency=low
+
+ * Third rc build (rev62077) of R 2.15.3 expected March 1
+
+ * debian/r-base-core.postinst: Fix typo in /etc/R/Renviron mode correction
+ creation (thanks again, Don Armstrong!) (Closes: #701774)
+
+ -- Dirk Eddelbuettel Wed, 27 Feb 2013 15:09:55 -0600
+
+r-base (2.15.3~20130326-1) unstable; urgency=low
+
+ * Second rc build (rev62062) of R 2.15.3 expected March 1
+
+ * debian/r-base-core.postinst: Ensure /etc/R/Renviron is created with
+ proper 0644 modes (thanks, Don Armstrong!) (Closes: #701774)
+
+ -- Dirk Eddelbuettel Tue, 26 Feb 2013 16:56:17 -0600
+
+r-base (2.15.3~20130324-1) unstable; urgency=low
+
+ * Initial rc build (rev62054) of R 2.15.3 expected March 1
+
+ * debian/rules: No longer patch the R script javareconf
+
+ -- Dirk Eddelbuettel Sun, 24 Feb 2013 17:55:56 -0600
+
+r-base (2.15.2-2) unstable; urgency=low
+
+ * debian/control: Switch Build-Depends: from libtiff4-dev to libtiff5-dev
+
+ * debian/control: Set Standards-Version: to current version
+
+ * debian/rules: Generate md5sums for all files (Closes: #700381)
+ * debian/r-base-core.postinst: Modied ucf file treatment to avoid
+ triggering md5sum changes (with thanks to Andreas Beckman)
+
+ -- Dirk Eddelbuettel Sat, 23 Feb 2013 11:11:51 -0600
+
+r-base (2.15.2-1) unstable; urgency=low
+
+ * New upstream release
+
+ * src/library/tools/R/install.R: Pass "perl = TRUE" parameter to sub()
+ function when defining SHLIB_* macros to work-around an erroneus
+ string replacement which causes build failures on arm* architectures
+ but make the change conditonal on actually being on arm*.
+
+ -- Dirk Eddelbuettel Fri, 26 Oct 2012 06:17:58 -0500
+
+r-base (2.15.1-5) unstable; urgency=low
+
+ * debian/control: Switch Build-Depends: from openjdk-6-jdk to default-jdk
+ (Closes: #684285)
+
+ -- Dirk Eddelbuettel Wed, 08 Aug 2012 17:59:25 -0500
+
+r-base (2.15.1-4) unstable; urgency=low
+
+ * src/library/tools/R/install.R: Pass "perl = TRUE" parameter to sub()
+ really passing it to sub and not to grep (Closes: #679180)
+
+ -- Dirk Eddelbuettel Sun, 15 Jul 2012 17:56:35 -0500
+
+r-base (2.15.1-3) unstable; urgency=low
+
+ * src/library/tools/R/install.R: Pass "perl = TRUE" parameter to sub()
+ and correcting error in logic of patch used in -2. (Closes: #679180)
+
+ -- Dirk Eddelbuettel Sun, 15 Jul 2012 16:17:25 -0500
+
+r-base (2.15.1-2) unstable; urgency=low
+
+ * src/library/tools/R/install.R: Pass "perl = TRUE" parameter to sub()
+ function when defining SHLIB_* macros to work-around an erroneus
+ string replacement which causes build failures on arm* architectures
+ but make the change conditonal on actually being on arm*.
+ With big thanks to Luca Falavigna for finding this fix. (Closes: #679180)
+
+ -- Dirk Eddelbuettel Sat, 14 Jul 2012 09:44:24 -0500
+
+r-base (2.15.1-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * src/X11/*: Applied revised patch by Philip Johnson to to set the X11
+ icon and window class for improved desktop experience; patch source
+ and support files are in debian/icon-class-patch/.
+ * debian/rules: Install icon png file and desktop file from Philip too
+ * debian/r-base-core.dirs: Add two directories for icon and desktop
+
+ -- Dirk Eddelbuettel Fri, 22 Jun 2012 06:04:05 -0500
+
+r-base (2.15.1~20120617-1) unstable; urgency=low
+
+ * Initial rc build (rev59569) of R 2.15.1 expected June 22
+
+ * debian/control: Removed dpatch from Depends: for r-base-dev [lintian]
+
+ * src/X11/*: Applied patch posted by Philip Johnson to r-devel on June 7
+ to set the X11 icon and window class for improved desktop experience
+
+ -- Dirk Eddelbuettel Sun, 17 Jun 2012 09:10:43 -0500
+
+r-base (2.15.0-2) unstable; urgency=low
+
+ * debian/rules: Test for gcc version 4.7.* and if found, reduce
+ optimisation to -O2 as gcc-4.7 fails to build R with -O3
+ (as per email discussions with Kurt Hornik of the R Core team)
+
+ -- Dirk Eddelbuettel Sun, 22 Apr 2012 09:46:28 -0500
+
+r-base (2.15.0-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Dirk Eddelbuettel Fri, 30 Mar 2012 07:42:33 -0500
+
+r-base (2.15.0~20120323-1) unstable; urgency=low
+
+ * Initial rc build (58802) of R 2.15.0 expected for March 30
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel Fri, 23 Mar 2012 07:48:55 -0500
+
+r-base (2.15.0~20120317-1) unstable; urgency=low
+
+ * Initial beta build (r58769) of R 2.15.0 expected for March 30
+
+ * debian/R.bash_completion: New version from SVN (thanks, Deepayan!)
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel Sat, 17 Mar 2012 13:27:32 -0500
+
+r-base (2.14.2-3) unstable; urgency=low
+
+ * debian/control: Really change Build-Depends: to libpng-dev this time
+ * debian/control: Also update Depends: for (virtual) r-base-dev
+
+ -- Dirk Eddelbuettel Wed, 07 Mar 2012 14:52:20 -0600
+
+r-base (2.14.2-2) unstable; urgency=low
+
+ * debian/control: Change Build-Depends: to libpng-dev (Closes: #662488)
+
+ -- Dirk Eddelbuettel Wed, 07 Mar 2012 14:27:40 -0600
+
+r-base (2.14.2-1) unstable; urgency=low
+
+ * New upstream release
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ * debian/control: Set Standards-Version: to current version
+
+ -- Dirk Eddelbuettel Wed, 29 Feb 2012 06:52:40 -0600
+
+r-base (2.14.2~20120222-1) unstable; urgency=low
+
+ * Initial rc build (r58449) of R 2.14.2 expected for Feb 29
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ * debian/r-cran.mk: Include simple-patchsys.mk only if quilt not used
+ as requested by Andreas Tille (Closes: #652456)
+
+ * debian/r-cran.mk: Support "R:Depends" expansion in debian/substvars
+ as requested by Andreas Tille and Charles Plessy (Closes: #659163)
+
+ -- Dirk Eddelbuettel Wed, 22 Feb 2012 08:51:46 -0600
+
+r-base (2.14.1-1) unstable; urgency=low
+
+ * New upstream release
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel Thu, 22 Dec 2011 06:32:24 -0600
+
+r-base (2.14.1~20111215-1) unstable; urgency=low
+
+ * Initial rc build (r57901) of R 2.14.1 expected for Dec 22
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ * debian/control: Added the battery of texlive-* packages in
+ Build-Depends: to 'Suggests:' for r-base-dev so that users can build
+ all related documentation too
+
+ -- Dirk Eddelbuettel Thu, 15 Dec 2011 21:57:29 -0600
+
+r-base (2.14.0-1) unstable; urgency=low
+
+ * New upstream release
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel Mon, 31 Oct 2011 05:00:31 -0500
+
+r-base (2.14.0~20111027-1) unstable; urgency=low
+
+ * Initial rc build (r57443) of R 2.14.0 expected for Oct 31
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ * debian/control: Set Standards-Version: to current version
+
+ -- Dirk Eddelbuettel Thu, 27 Oct 2011 12:59:54 -0500
+
+r-base (2.14.0~20111021-1) unstable; urgency=low
+
+ * Initial beta build (r57355) of R 2.14.0 expected for Oct 31
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel Fri, 21 Oct 2011 14:56:51 -0500
+
+r-base (2.14.0~20111015-1) unstable; urgency=low
+
+ * Initial alpha release (r57258) of R 2.14.0 expected for Oct 31
+
+ * debian/rules: Setting '-std=gnu99' as part of CC, not CFLAGS (with
+ thanks to Kurt Hornik for the suggestion)
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel Sun, 16 Oct 2011 00:39:15 -0500
+
+r-base (2.13.2-1) unstable; urgency=low
+
+ * New upstream release
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ * debian/control: Added 'texlive-fonts-extra' to Build-Depends which R
+ 2.14.0 will need for the inconsolate font used in vignettes.
+
+ -- Dirk Eddelbuettel Fri, 30 Sep 2011 07:02:04 -0500
+
+r-base (2.13.2~20110922-1) unstable; urgency=low
+
+ [ Dirk Eddelbuettel ]
+ * First rc build (r57046) of R 2.13.2 expected for Sep 30
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+ * Applied patch by Jonathan Nieder re 'make check' (Closes: #638265)
+
+ [ Jonathan Nieder ]
+ * debian/rules: Run tests in build target, not the install target (since
+ they do not require root privileges).
+ * debian/rules: Do not run tests when DEB_BUILD_OPTIONS contains
+ "nocheck".
+
+ -- Dirk Eddelbuettel Fri, 23 Sep 2011 07:23:10 -0500
+
+r-base (2.13.1-1) unstable; urgency=low
+
+ * New upstream release
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel Fri, 08 Jul 2011 06:17:17 -0500
+
+r-base (2.13.0-4) unstable; urgency=low
+
+ * debian/r-cran.mk: Make call to xvfb-run more robust by adding '-a'
+ option to allow automatic switching to free virtual server; with thanks
+ to Salvatore Bonaccorso for the suggestions (Closes: #630869)
+
+ -- Dirk Eddelbuettel Wed, 22 Jun 2011 08:59:55 -0500
+
+r-base (2.13.0-3) unstable; urgency=low
+
+ * debian/control: Switch Build-Depends: (and Depends: for r-base-dev)
+ from libjpeg62-dev to libjpeg-dev for libjpeg8 transition -- with
+ thanks to Bill Allombert for the heads-up (Closes: #629978)
+
+ -- Dirk Eddelbuettel Thu, 09 Jun 2011 17:43:27 -0500
+
+r-base (2.13.0-2) unstable; urgency=low
+
+ * debian/control: Add 'Depends: cdbs' to r-base-dev so that the r-cran-*
+ packages do not need to depend on it individually; it is a feature
+ of the r-cran.mk script sourced from r-base-dev (Closes: #627831)
+
+ -- Dirk Eddelbuettel Tue, 24 May 2011 19:28:19 -0500
+
+r-base (2.13.0-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel Wed, 13 Apr 2011 06:24:26 -0500
+
+r-base (2.13.0~20110407-1) unstable; urgency=low
+
+ * First rc build (r55373) of R 2.13.0 expected for Apr 13
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel Fri, 08 Apr 2011 12:10:17 -0500
+
+r-base (2.13.0~20110401-1) unstable; urgency=low
+
+ * First beta build (r55246) of R 2.13.0 expected for Apr 13
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel Sat, 02 Apr 2011 07:38:54 -0500
+
+r-base (2.13.0~20110324-1) unstable; urgency=low
+
+ * Second alpha build (r55004) of R 2.13.0 expected for Apr 13
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel Fri, 25 Mar 2011 07:15:21 -0500
+
+r-base (2.13.0~20110316-1) unstable; urgency=low
+
+ * Initial alpha release (r54827) of R 2.13.0 expected for Apr 13
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel Thu, 17 Mar 2011 08:05:43 -0500
+
+r-base (2.12.2-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel Fri, 25 Feb 2011 07:16:46 -0600
+
+r-base (2.12.2~20110218-1) unstable; urgency=low
+
+ * First rc built (r54487) of R 2.12.2 expected for Feb 25
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel Sat, 19 Feb 2011 10:50:12 -0600
+
+r-base (2.12.2~20110215-1) unstable; urgency=low
+
+ * First beta built (r54439) of R 2.12.2 expected for Feb 25
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel Tue, 15 Feb 2011 17:45:22 -0600
+
+r-base (2.12.1-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel Thu, 16 Dec 2010 06:15:09 -0600
+
+r-base (2.12.1~20101208-1) unstable; urgency=low
+
+ * First rc built (r53817) of R 2.12.1 expected for Dec 16
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel Thu, 09 Dec 2010 06:44:18 -0600
+
+r-base (2.12.0-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * As a new major release, this will go to unstable despite the freeze
+
+ -- Dirk Eddelbuettel Fri, 15 Oct 2010 05:11:09 -0500
+
+r-base (2.12.0~20101007-1) experimental; urgency=low
+
+ * First rc built (r53048) of R 2.12.0 expected for Oct 15
+
+ * Distribution still set to 'experimental' as release freeze is ongoing
+
+ -- Dirk Eddelbuettel Thu, 07 Oct 2010 20:44:50 -0500
+
+r-base (2.11.1-7) unstable; urgency=low
+
+ * debian/control: Add 'liblzma-dev' to Build-Depends (Closes: #599120)
+
+ -- Dirk Eddelbuettel Mon, 04 Oct 2010 16:12:19 -0500
+
+r-base (2.12.0~20101002-1) experimental; urgency=low
+
+ * First beta built (r53048) of R 2.12.0 expected for Oct 15
+
+ * Distribution still set to 'experimental' as release freeze is ongoing
+
+ -- Dirk Eddelbuettel Sat, 02 Oct 2010 14:27:42 -0500
+
+r-base (2.12.0~20100928-1) experimental; urgency=low
+
+ * Third alpha built (r53048) of R 2.12.0 expected for Oct 15
+
+ * Distribution still set to 'experimental' as release freeze is ongoing
+
+ * debian/control: Added liblzma-dev to Build-Depends
+
+ -- Dirk Eddelbuettel Tue, 28 Sep 2010 14:59:37 -0500
+
+r-base (2.12.0~20100924-1) experimental; urgency=low
+
+ * Second alpha built (r52983) of R 2.12.0 expected for Oct 15
+
+ * Distribution still set to 'experimental' as release freeze is ongoing
+
+ -- Dirk Eddelbuettel Fri, 24 Sep 2010 09:28:16 -0500
+
+r-base (2.12.0~20100917-1) experimental; urgency=low
+
+ * Initial alpha release (r52529) of R 2.12.0 expected for Oct 15
+
+ * Distribution set to 'experimental' as release freeze is ongoing
+
+ * R/m4, configure: Check zlib version for 1.2.3.4, not 1.2.3
+
+ -- Dirk Eddelbuettel Fri, 17 Sep 2010 06:52:33 -0500
+
+r-base (2.11.1-6) unstable; urgency=low
+
+ * debian/control: Add [!mips] to the list architectures that do not have
+ a Build-Depends: on openjdk-6-jdk (per request of release team)
+
+ -- Dirk Eddelbuettel Sun, 15 Aug 2010 08:09:11 -0500
+
+r-base (2.11.1-5) unstable; urgency=low
+
+ * debian/rules: Also set ${cflags}, ${cxxflags}, ${fcflags} during
+ configure in light of #590126
+ * debian/rules: Set FCFLAGS as well as FFLAGS
+
+ -- Dirk Eddelbuettel Fri, 06 Aug 2010 07:10:57 -0500
+
+r-base (2.11.1-4) unstable; urgency=low
+
+ * debian/rules: Impose '-g0' for mips and mipsel in light of #590126
+
+ -- Dirk Eddelbuettel Thu, 05 Aug 2010 13:06:00 -0500
+
+r-base (2.11.1-3) unstable; urgency=low
+
+ * m4/R.m4: Apply patch Arnaud Patard to suppress -g flag during
+ configure which currently upsets tcl/tk on the mips and mipsel
+ platform (see the release-critical bug report #590126).
+ A big thanks to Arnaud for the patch and detailed analysis.
+
+ -- Dirk Eddelbuettel Sun, 01 Aug 2010 13:50:21 -0500
+
+r-base (2.11.1-2) unstable; urgency=low
+
+ * debian/rules: Re-apply arm fixes from 2.11.0-2 below which
+ inadvertently slipped. Thanks once again to Modestas for
+ spotting this. (Closes: #581237)
+
+ -- Dirk Eddelbuettel Thu, 03 Jun 2010 17:19:17 -0500
+
+r-base (2.11.1-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ -- Dirk Eddelbuettel Mon, 31 May 2010 06:52:52 -0500
+
+r-base (2.11.1~20100525-1) unstable; urgency=low
+
+ * Release Candidate (r52102) of R 2.11.1 expected for May 31
+
+ -- Dirk Eddelbuettel Wed, 26 May 2010 06:48:15 -0500
+
+r-base (2.11.0-2) unstable; urgency=low
+
+ * debian/rules: Withdraw old hack to let armel build without system blas
+ and lapack as these now work. With special thanks to Modestas Vainius
+ for spotting this and testing the fix. (Closes: #581237)
+
+ * debian/rules: Also withdraw setting of radical -O0 -g0 on armel
+ which was once needed due to poor Fortran compiler performance.
+ Once again thanks to Modestas Vainius for spotting and checking!
+
+ -- Dirk Eddelbuettel Wed, 12 May 2010 21:25:38 -0500
+
+r-base (2.11.0-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ -- Dirk Eddelbuettel Thu, 22 Apr 2010 06:29:47 -0500
+
+r-base (2.11.0~20100419-1) unstable; urgency=low
+
+ * Initial rc release (r51778) of R 2.11.0 expected for April 22
+
+ -- Dirk Eddelbuettel Tue, 20 Apr 2010 10:04:38 -0500
+
+r-base (2.11.0~20100409-1) unstable; urgency=low
+
+ * Initial beta release (r51661) of R 2.11.0 expected for April 22
+
+ -- Dirk Eddelbuettel Sat, 10 Apr 2010 14:35:56 -0500
+
+r-base (2.11.0~20100402-1) unstable; urgency=low
+
+ * Initial alpha release (r51564) of R 2.11.0 expected for April 22
+
+ * debian/control: Fix typo / editing mistake in Description for r-base
+ (Closes: #563234)
+
+ * debian/rules: Add softlink from /usr/lib/R/lib/libR.so into /usr/lib
+ to make the R library visible as /etc/ld.so.conf.d/ is no longer used
+ (Closes: #575913)
+
+ * debian/control: Set Standards-Version: to current version
+
+ -- Dirk Eddelbuettel Sat, 03 Apr 2010 08:44:29 -0500
+
+r-base (2.10.1-2) unstable; urgency=low
+
+ * configure: Apply patch by Nobuhiro Iwamatsu to allow for builds
+ on the sh4 architecture (Closes: #561180)
+
+ -- Dirk Eddelbuettel Mon, 14 Dec 2009 21:30:07 -0600
+
+r-base (2.10.1-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * debian/control: For r-recommended, replace r-cran-vr with the four
+ unbundled packages r-cran-{mass,class,nnet,spatial}
+
+ -- Dirk Eddelbuettel Mon, 14 Dec 2009 06:14:03 -0600
+
+r-base (2.10.1~20091210-1) unstable; urgency=low
+
+ * New upstream release candidate for R 2.10.1 expected for December 14
+
+ -- Dirk Eddelbuettel Thu, 10 Dec 2009 13:42:48 -0600
+
+r-base (2.10.1~20091206-1) unstable; urgency=low
+
+ * New upstream beta release for R 2.10.1 expected for December 14
+
+ -- Dirk Eddelbuettel Sun, 06 Dec 2009 15:27:49 -0600
+
+r-base (2.10.0-2) unstable; urgency=low
+
+ * debian/control: Replace Build-Depends: on xpdf-reader with xdg-utils
+ with thanks to Moritz Muehlenhoff
+
+ * debian/r-base-core.postinst: Switch from texhash to mktexlsr with
+ thanks to Julian Gilbey (Closes: #555187)
+
+ * debian/control: Fix grammar error by switching to 'This package provides'
+ in five of the package entries (which still does not quite call for this
+ somewhat inflationary use of automated bug filing seen here ...)
+ (Closes: #557842 #557843 #557844 #557845 #557846 #557847 #55849)
+
+ -- Dirk Eddelbuettel Sat, 28 Nov 2009 03:37:58 -0600
+
+r-base (2.10.0-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ -- Dirk Eddelbuettel Mon, 26 Oct 2009 07:31:30 -0500
+
+r-base (2.10.0~20091019-1) unstable; urgency=low
+
+ * First release candidate of R 2.10.0 expected for October 26
+
+ * debian/rules: Configure with R_BROWSER=xdg-open as default HTML browser
+
+ * debian/control: As html documentation is now dynamically generated, the
+ r-doc-html package is no longer six mb in size and can be promoted from
+ Suggested: to Recommended: (thanks to Michael Rutter for the suggestion).
+
+ * debian/control: Add Conflicts/Provides/Replaces for r-base-core
+ on r-base-latex to uninstall existing (and now redundant) packages.
+
+ -- Dirk Eddelbuettel Mon, 19 Oct 2009 10:15:03 -0500
+
+r-base (2.10.0~20091013-1) unstable; urgency=low
+
+ * First beta release of R 2.10.0 expected for October 26
+
+ * debian/rules: No longer call 'make html' or 'make help' as starting
+ with R 2.10.0, documentation is now rendered on-demand by the R engine
+ * debian/rules: No longer fix modes on help-{links,print}.sh as these
+ script are no longer shipped
+
+ * debian/control: Removed entry for package r-base-latex
+
+ -- Dirk Eddelbuettel Tue, 13 Oct 2009 12:41:48 -0500
+
+r-base (2.9.2-4) unstable; urgency=low
+
+ * configure: Re-insert xdg-open into list of pdf viewers tested
+ for at build time -- thanks to Sebastian P. Luque for the heads-up!
+
+ -- Dirk Eddelbuettel Tue, 06 Oct 2009 17:21:20 -0500
+
+r-base (2.9.2-3) unstable; urgency=low
+
+ * debian/control: Also change Depends: in r-base-dev from
+ from 'libreadline5-dev' to 'libreadline-dev'
+
+ -- Dirk Eddelbuettel Wed, 16 Sep 2009 20:56:57 -0500
+
+r-base (2.9.2-2) unstable; urgency=low
+
+ * debian/control: As requested by Matthias Klose, change
+ Build-Depends: from 'libreadline5-dev' to 'libreadline-dev'
+
+ * debian/rules: Soft link from /usr/lib/R/COPYING against GPL-2
+ instead of GPL, with thanks to Isaac for spotting this.
+
+ * debian/control: Set Standards-Version: to current version
+
+ * debian/control: Add Depends: for r-doc-info on
+ 'dpkg (>= 1.15.4) | install-info'
+
+ * debian/rules: No longer install /etc/ld.so.conf.d/libR.conf
+
+ * debian/r-base-core.postinst: Call paperconf without prepended path
+
+ -- Dirk Eddelbuettel Sun, 13 Sep 2009 20:27:45 -0500
+
+r-base (2.9.2-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * r-doc-{info,html}.{postinst,prerm}: Omit calls to install-docs
+ and install-info which is now handled by dpkg triggers.
+ * debian/control: Builds-Depends: on debhelper (>= 7.2.3)
+
+ * debian/control: Add 'xdg-utils' to Depends: for r-base-core
+
+ * debian/r-cran.mk: Improved find command in clean target
+
+ -- Dirk Eddelbuettel Mon, 24 Aug 2009 06:15:24 -0500
+
+r-base (2.9.1-2) unstable; urgency=low
+
+ * Re-activated Java support using an updated ca-certificates-java
+ package by Matthias Klose -- Thanks!
+ * debian/control: Build-Depends: on openjdk-6-jdk added back in
+
+ * debian/control: Update Standards-Version: to current value.
+
+ -- Dirk Eddelbuettel Mon, 29 Jun 2009 19:20:13 -0500
+
+r-base (2.9.1-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * configure,m4/R.m4: Add xdg-open to set of pdf viewers checked by configure
+ (and this change has been committed upstream for 2.10.0 as well).
+
+ * As of this morning, the Debian Java toolchain is broken (#534520) so
+ support for Java is disabled by temporarily removing
+ openjdk-6-jdk [!arm !hppa !kfreebsd-i386 !kfreebsd-amd64 !hurd-i386]
+ from Build-Depends: --- a new upload will be provided once this problem
+ is fixed.
+
+ -- Dirk Eddelbuettel Fri, 26 Jun 2009 09:34:58 -0500
+
+r-base (2.9.1~20090621-1) unstable; urgency=low
+
+ * First beta release of R 2.9.1 which should be released on June 26
+
+ * configure,m4/R.m4: Add xdg-open to set of pdf viewers checked by configure
+
+ -- Dirk Eddelbuettel Sun, 21 Jun 2009 21:21:25 -0500
+
+r-base (2.9.1~20090618-1) unstable; urgency=low
+
+ * First beta release of R 2.9.1 which should be released on June 26
+
+ * debian/control: Switched (Build-)Depends: from xpdf-reader to xdg-utils;
+ pdf files will now be opened with xdg-open to reflect desktop choices.
+
+ * debian/README.Atlas: Further editing, added test script
+
+ * debian/r-cran.mk: Do not remove src/Makevars.in in clean step as this was
+ seen to upset some packages when used by cran2deb for all of CRAN
+
+ -- Dirk Eddelbuettel Thu, 18 Jun 2009 07:00:11 -0500
+
+r-base (2.9.0-4) unstable; urgency=low
+
+ * debian/r-cran.mk: Applied suggestion by Julian Gilbey to correct
+ accidental lowercasing of CRAN package names which can prevent removal
+ ot extra license files (Closes: #531224)
+
+ * debian/README.Atlas: Updated to current packages (Closes: #531223)
+
+ * debian/r-cran.mk: Small correction to previously added 'clean' target
+
+ -- Dirk Eddelbuettel Sun, 31 May 2009 21:15:27 -0500
+
+r-base (2.9.0-3) unstable; urgency=low
+
+ * debian/r-cran.mk: Applied patch by Steffen Moeller that adds a
+ 'clean' target which is useful if one builds outside of pbuilder.
+
+ -- Dirk Eddelbuettel Sat, 16 May 2009 18:07:02 -0500
+
+r-base (2.9.0-2) unstable; urgency=low
+
+ * debian/r-base-core.prerm: Remove /etc/R/Renviron on remove or purge to
+ not leave unowned files around. Also make sure ucf forgets all about it.
+ Special Thanks! to Holger Levsen. (Closes: #527618)
+
+ -- Dirk Eddelbuettel Sun, 10 May 2009 19:00:28 -0500
+
+r-base (2.9.0-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * debian/rules: Turn optimisation back to -O3 on alpha (as elsewhere)
+ with thanks to Kurt Roeckx for applying a fix to gcc
+
+ -- Dirk Eddelbuettel Fri, 17 Apr 2009 06:56:48 -0500
+
+r-base (2.9.0~20090410-1) unstable; urgency=low
+
+ * First release candidate of R 2.9.0 expected for April 17
+
+ * debian/rules: Lower optimisation to -O2 on alpha
+
+ -- Dirk Eddelbuettel Sat, 11 Apr 2009 16:10:24 -0500
+
+r-base (2.9.0~20090403-1) unstable; urgency=low
+
+ * First beta release of R 2.9.0 expected for April 17
+
+ -- Dirk Eddelbuettel Sat, 04 Apr 2009 10:52:59 -0500
+
+r-base (2.9.0~20090327-1) unstable; urgency=low
+
+ * Second alpha release of R 2.9.0 expected for April 17
+
+ * debian/control: Update Standards-Version: to current value.
+
+ -- Dirk Eddelbuettel Sat, 28 Mar 2009 13:53:36 -0500
+
+r-base (2.9.0~20090320-1) unstable; urgency=low
+
+ * Initial alpha release of R 2.9.0 expected for April 17
+
+ * debian/control: Changed Section: of r-base, r-base-core, and r-base-dev to
+ new section 'gnu-r'
+
+ * debian/control: Add r-cran-matrix to r-recommended as the upstream package
+ 'Matrix' is part of the core R release as of 2.9.0.
+
+ * debian/control: Change Depends: on 'ucf' to 'ucf (>= 3.0)' (Closes: #516508)
+
+ * debian/rules: No longer apply build-help.pl.patch, and no longer install
+ build-help.pl as the R help system was rewritten (mostly in R itself).
+
+ * debian/{control,compat}: Switch to debhelper compat level 7, and hence
+ set Build-Depends: on 'debhelper (>= 7.0.0)'
+
+ * debian/r-doc-html.{postinst,prerm}: Created manually as debhelper seemingly
+ stopped creating these from dh_installdocs
+
+ -- Dirk Eddelbuettel Sat, 21 Mar 2009 13:06:30 -0500
+
+r-base (2.8.1-2) unstable; urgency=low
+
+ * debian/control: Add another Build-Depends: exclusion for the
+ 'kfreebsd-i386 kfreebsd-amd64 hurd-i386' architecture to openjdk-6-jdk.
+ Thanks to Petr Salinger for the heads-up. (Closes: 512324)
+
+ -- Dirk Eddelbuettel Mon, 19 Jan 2009 12:40:24 -0600
+
+r-base (2.8.1-1) unstable; urgency=low
+
+ * New upstream version released today
+
+ -- Dirk Eddelbuettel Mon, 22 Dec 2008 20:10:19 -0600
+
+r-base (2.8.1~20081219-1) unstable; urgency=low
+
+ * Updated to Dec 19 release candidate of R 2.8.1 expected for Dec 22
+
+ * r-doc-pdf expected to be empty due to the tex/texinfo bug below
+
+ * debian/control: Change Build-Depends: on openjdk-6-jdk to
+ 'openjdk-6-jdk [!arm !hppa]' as arm and hppa do not have one.
+
+ -- Dirk Eddelbuettel Sat, 20 Dec 2008 09:26:38 -0600
+
+r-base (2.8.1~20081212) unstable; urgency=low
+
+ * Initial beta release of R 2.8.1 expected for Dec 22
+ * Fixes 'dev2bitmap fails with gsexe related error' (Closes: #505698)
+
+ * As #487974 is still open, the r-doc-pdf documentation package is again
+ almost empty due to the tilde in the Debian revision number which breaks
+ the texinfo-to-pdf conversions. Users are advised to hold onto the
+ 2.8.0 version of the package until 2.8.1 comes out in ten days.
+
+ * debian/control: Added 'openjdk-6-jdk' to Build-Depends:
+ * debian/r-cran.mk: Removed commented-out code that attempted to
+ configure Java at package build-time, we now do that at R builds
+
+ * debian/rules: Set softlinks for COPYING and COPYING.LIB to GPL-2 and
+ LGPL-2.1, respectively, to ensure the correct versions are linked.
+ Thanks to Deepayan Sarkar for the suggestion.
+
+ -- Dirk Eddelbuettel Fri, 12 Dec 2008 11:36:22 -0600
+
+r-base (2.8.0-1) unstable; urgency=low
+
+ * New upstream version released a few hours ago
+
+ -- Dirk Eddelbuettel Mon, 20 Oct 2008 06:07:59 -0500
+
+r-base (2.8.0~20081013-1) unstable; urgency=low
+
+ * Initial 'Release Candidate' package of R 2.8.0 expected for October 20
+
+ -- Dirk Eddelbuettel Mon, 13 Oct 2008 10:07:47 -0500
+
+r-base (2.8.0~20081006-1) unstable; urgency=low
+
+ * Initial 'Beta' package of R 2.8.0 expected to be released on October 20
+
+ * debian/control: Updated Description: text; with thanks to Doug Bates
+ and Martin Maechler for helpful suggestions and comments.
+
+ -- Dirk Eddelbuettel Sun, 05 Oct 2008 15:15:44 -0500
+
+r-base (2.7.2-2) unstable; urgency=low
+
+ * debian/r-cran.mk: Switch from cdbs snippet dpatch.mk to simple-patchsys.mk
+
+ * debian/{Renviron.site,Rprofile.site}: Install simple stanza files with
+ example usage into /etc/R/ with softlinks from $R_HOME/etc as for the
+ other config files. Thanks to Christian Hudon for the suggestion.
+ (Closes: #498520)
+
+ * src/library/base/R/dcf.R: Correct regexp for Debian-style control field
+ writing as per the one-line patch by Charles Blundell to r-devel / r-bugs
+ which should help us in cran2deb as well
+
+ * debian/control: Switched Build-Depends from tcl/tk 8.4 to 8.5
+
+ -- Dirk Eddelbuettel Sat, 13 Sep 2008 17:07:31 -0500
+
+r-base (2.7.2-1) unstable; urgency=low
+
+ * New upstream version released a few hours ago
+
+ * src/scripts/javareconf: Replace use of /tmp with result of
+ `mktemp -t -d` to avoid symlink attacks (Closes: #496418)
+
+ -- Dirk Eddelbuettel Mon, 25 Aug 2008 06:37:14 -0500
+
+r-base (2.7.2~20080816-1) unstable; urgency=low
+
+ * Initial 'beta' release of R 2.7.2 expected to be released on August 25
+
+ -- Dirk Eddelbuettel Sun, 17 Aug 2008 10:15:43 -0500
+
+r-base (2.7.1-2) unstable; urgency=low
+
+ * debian/r-doc-{info,html,pdf}: Added R-ints and R-admin manuals
+ * debian/r-doc-html.doc-base.ints: Added new doc-base file
+
+ * debian/rules: Exclude usr/lib/R/etc/Renviron.ucf from md5sums
+ (Closes: #491637)
+
+ -- Dirk Eddelbuettel Mon, 21 Jul 2008 06:42:27 -0500
+
+r-base (2.7.1-1) unstable; urgency=low
+
+ * New upstream version released a few hours ago
+
+ -- Dirk Eddelbuettel Mon, 23 Jun 2008 06:10:26 -0500
+
+r-base (2.7.1~20080621-1) unstable; urgency=low
+
+ * New 'rc' release of R 2.7.1 expected to be released on June 23
+
+ * debian/{rules,r-base-core.postinst}: Changed to have /etc/R/Renviron
+ be handled by ucf, with thanks to Aaron M. Ucko (Closes: #476420)
+ * debian/control: Added Depends: on ucf to r-base-core
+
+ * debian/control: Build-Depends updated from 'x-dev, xbase-clients' to
+ 'x11proto-core-dev, xauth'
+
+ -- Dirk Eddelbuettel Sat, 21 Jun 2008 11:26:48 -0500
+
+r-base (2.7.1~20080614-1) unstable; urgency=low
+
+ * Initial 'beta' release of R 2.7.1 expected to be released on June 23
+
+ * debian/control: Added Homepage: field as suggested by Andreas Tille
+ (Closes: #481058)
+
+ -- Dirk Eddelbuettel Sat, 14 Jun 2008 11:45:22 -0500
+
+r-base (2.7.0-1) unstable; urgency=low
+
+ * New upstream version released a few hours ago
+
+ -- Dirk Eddelbuettel Tue, 22 Apr 2008 08:40:44 -0500
+
+r-base (2.7.0~20080416-1) unstable; urgency=low
+
+ * Second 'rc' release of R 2.7.0 expected to be released on April 22
+
+ * debian/rules: Explicit rebuild and copying of Rscript to prevent seepage
+ of a bad R_HOME setting from build-time (Closes: #475343)
+
+ * debian/control: Add new package 'r-base-core-dbg' with stripped debugging
+ symbols; thanks to Soeren for the suggestion (Closes: #476345)
+ * debian/rules: Modified dh_strip call accordingly
+
+ -- Dirk Eddelbuettel Wed, 16 Apr 2008 13:01:21 -0500
+
+r-base (2.7.0~20080415-1) unstable; urgency=low
+
+ * Initial 'rc' release of R 2.7.0 expected to be released on April 22
+
+ * debian/r-doc.html.doc-base.*: Changed section to 'Science/Data Analysis'
+
+ * debian/control: Added 'xvfb, xbase-clients, xfonts-base' to Build-Depends:
+ * debian/rules: Change 'make check' into 'xvfb-run make check-all'
+
+ * debian/control: Replace 'tetex-bin, tetex-extra' in Build-Depends: with
+ 'texlive-base, texlive-latex-base, texlive-generic-recommended,
+ texlive-fonts-recommended, texlive-extra-utils, texlive-latex-recommended,
+ texlive-latex-extra, texinfo, texi2html'
+
+ -- Dirk Eddelbuettel Tue, 15 Apr 2008 14:32:08 -0500
+
+r-base (2.7.0~20080408-1) unstable; urgency=low
+
+ * Initial 'beta' release of R 2.7.0 expected to be released on April 22
+
+ * debian/rules: Configure and build with Debian's lapack
+ * debian/control: Upgraded Build-Depends: to liblapack-dev (>= 3.1.1)
+
+ * debian/rules: Add new configure options --with-cairo and --with-pango
+ * debian/control: Added Build-Depends: on 'libpango1.0-dev, libcairo2-dev'
+ * debian/control: Revert Depends: for 'quasi-virtual' r-base-dev to
+ 'libblas-dev | libatlas-base-dev, liblapack-dev | libatlas-base-dev'
+ as the transition to gfortran-built lapack/blas/atlas is complete.
+ (Closes: #473695)
+
+ * debian/control: r-recommended no longer Depends: on r-cran-rcompgen as
+ per upstream having integrated the rcomgen packaged into r-base-core.
+ * debian/control: Added Conflicts/Provides/Replaces for r-base-core
+ on r-cran-rcompgen to uninstall existing (and now redundant) packages.
+
+ * debian/control: Added Build-Depends on 'libtiff4-dev'
+
+ -- Dirk Eddelbuettel Tue, 08 Apr 2008 21:24:42 -0500
+
+r-base (2.6.2-2) unstable; urgency=low
+
+ * debian/{rules,control}: Reverting the use of Debian's lapack as we got
+ a SVD-related bug report with a day -- thanks, Ben! (Closes: #464833)
+ - remove 'liblapack-dev' from Build-Depends
+ - call configure with
+
+ -- Dirk Eddelbuettel Sat, 09 Feb 2008 10:05:24 -0600
+
+r-base (2.6.2-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * debian/control: Added 'liblapack-dev' to Build-Depends: to switch back
+ to using Debian's Lapack rather than the version supplied by R.
+ * debian/rules: Dito, call configure with '--with-lapack'
+
+ -- Dirk Eddelbuettel Fri, 08 Feb 2008 09:40:02 -0600
+
+r-base (2.6.1-2) unstable; urgency=low
+
+ * debian/control: Replace Build-Depends: on 'refblas3-dev | atlas3-base-dev'
+ with 'libblas-dev' to use the new gfortran-built BLAS libraries. Thanks
+ to Riku Voipio for the heads-up and patch. (Closes: #461767)
+
+ * debian/control: Likewise set the Depends: for the quasi-virtual
+ r-base-dev on 'libblas-dev' to enfore use of the new BLAS.
+
+ * debian/control: Update Standards-Version: to current value.
+
+ * debian/{r-base-core,r-recommended}.lintian: Add a few silencers for
+ the 'package-contains-empty-directory' warnings.
+
+ -- Dirk Eddelbuettel Sun, 20 Jan 2008 20:24:52 -0600
+
+r-base (2.6.1-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * debian/rules: As gcc-4.2 is now, unset suffix '-4.2' on gcc et al
+ * debian/control: Likewise, removed '-4.2' from gcc et al in Build-Depends
+ and Depends for r-base-dev and used versioned Depends (>= 4:4.1.0)
+ which are also suitable for backports and Ubuntu port -- and Debian
+ will get 4.2 anyway as it is the default in testing and unstable
+
+ * debian/rules: Define FC=gfortran as the Fortran95 compiler for packages
+
+ * debian/r-base-core.shlibs: Point libR.so and libRlapack.so to r-base-core
+
+ -- Dirk Eddelbuettel Mon, 26 Nov 2007 11:20:57 -0600
+
+r-base (2.6.0-4) unstable; urgency=medium
+
+ * Urgency medium as a "Depends: tk8.4 (>= 8.4.16-2)" is needed to undo
+ the breakage introduced by the version in testing (tk8.4_8.4.16-1).
+ This build does not introduce any new code or configuration settings
+ and should migrate to testing as soon as possible.
+
+ * Rebuild R to obtain Depends on newer Tk (Closes: #451152)
+
+ * debian/shlibs.local: New file, added for Depends on newer tk8.4 which
+ is not (yet) provided via the package's shlibs file, also filed a
+ bugreport against tk8.4
+
+ -- Dirk Eddelbuettel Tue, 13 Nov 2007 19:45:59 -0600
+
+r-base (2.6.0-3) unstable; urgency=low
+
+ * debian/r-cran.mk: Retiring the experimental javareconf support for now.
+
+ -- Dirk Eddelbuettel Wed, 10 Oct 2007 08:46:43 -0500
+
+r-base (2.6.0-2) unstable; urgency=low
+
+ * debian/r-cran.mk: Set Java (re-)conf. call to "R CMD javareconf -e ''"
+ to not require write to Makeconf file (Closes: #445722)
+
+ -- Dirk Eddelbuettel Tue, 09 Oct 2007 14:20:12 -0500
+
+r-base (2.6.0-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ -- Dirk Eddelbuettel Wed, 03 Oct 2007 10:25:43 -0500
+
+r-base (2.6.0~20070930-1) unstable; urgency=low
+
+ * Second 'rc' release of R 2.6.0 expected to be released on October 3
+
+ * debian/r-cran.mk:
+ - Apply patch by David Vernazobres to permit additional argument
+ - Add test for Java compiler and run R CMD javareconf if found
+
+ -- Dirk Eddelbuettel Mon, 01 Oct 2007 16:38:49 -0500
+
+r-base (2.6.0~20070925-1) unstable; urgency=low
+
+ * Initial 'rc' release of R 2.6.0 expected to be released on October 3
+
+ -- Dirk Eddelbuettel Wed, 26 Sep 2007 10:08:33 -0500
+
+r-base (2.6.0~20070918-1) unstable; urgency=low
+
+ * Initial 'beta' release of R 2.6.0 expected to be released on October 3
+
+ -- Dirk Eddelbuettel Wed, 19 Sep 2007 09:50:17 -0500
+
+r-base (2.6.0~20070910-3) unstable; urgency=low
+
+ * debian/r-cran.mk: Fix another syntax error
+
+ -- Dirk Eddelbuettel Wed, 12 Sep 2007 21:54:10 -0500
+
+r-base (2.6.0~20070910-2) unstable; urgency=low
+
+ * debian/r-cran.mk: Add missing escape to if/else/fi statement for xvfb-run
+
+ -- Dirk Eddelbuettel Wed, 12 Sep 2007 21:01:19 -0500
+
+r-base (2.6.0~20070910-1) unstable; urgency=low
+
+ * Initial 'alpha' release of R 2.6.0 expected to be released on October 3
+
+ * Debian changes:
+ - debian/control: Added 'cdbs, debhelper' as Suggests: for r-base-dev
+
+ - r-cran.mk: If the xvfb-run script is found, use it to wrap the call
+ to 'R CMD INSTALL ...' to provide (virtual) X11 for packages that may
+ need it, this even works in a pbuilder setting. If not found, just
+ proceed as usual with a straight-up 'R CMD INSTALL ...'. Packages
+ using this feature need Build-Depends on xvfb, xbase-clients (for
+ xauth) and xfonts-base (for basic fonts).
+
+ -- Dirk Eddelbuettel Tue, 11 Sep 2007 16:24:33 -0500
+
+r-base (2.5.1-2) unstable; urgency=low
+
+ * debian/control: Add r-cran-codetools to Depends: for r-recommends
+
+ * debian/r-base-core.menu: Section now "Applications/Science/Data Analysis"
+
+ * debian/Renviron-R_LIBS.patch: With R 2.5.*, modify R_LIBS_SITE not R_LIBS
+
+ -- Dirk Eddelbuettel Wed, 18 Jul 2007 14:26:06 -0500
+
+r-base (2.5.1-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Dirk Eddelbuettel Thu, 28 Jun 2007 09:45:43 -0500
+
+r-base (2.5.1~20070625-1) unstable; urgency=low
+
+ * Second release candidate for R 2.5.1 expected for June 28
+
+ * To ensure successful builds involving Fortran, we need to explicitly
+ select the gcc-4.2 versions of the the compiler suite in debian/rules,
+ and per Build-Depends in debian/control as well as the Depends for
+ r-base-dev. Backporters will probably need to revert this to 4.1.
+ Thanks to Michael Ablassmeier and Lucas Nussbaum for the heads-up.
+
+ * debian/control: Changed Build-Depends from 'gcc (>= 4:4.0),
+ gfortran (>= 4.0.2)' to 'gcc-4.2, g++-4.2, gfortran-4.2'
+ * debian/control: Changed Depends for r-base-dev from 'gfortran (>= 4.0.2),
+ gcc (>= 4:4.0), g++ (>= 4:4.0)' to 'gcc-4.2, g++-4.2, gfortran-4.2'
+
+ -- Dirk Eddelbuettel Tue, 26 Jun 2007 09:36:23 -0500
+
+r-base (2.5.1~20070622-1) unstable; urgency=low
+
+ * First release candidate for R 2.5.1 expected for June 28
+
+ -- Dirk Eddelbuettel Sat, 23 Jun 2007 20:13:22 -0500
+
+r-base (2.5.1~20070618-1) unstable; urgency=low
+
+ * New beta release candidate for R 2.5.1 expected for June 28
+
+ * debian/control: Add 'dpatch' to Depends: for r-base-dev to ensure
+ that the r-cran.mk stanza can use dpatch (Closes: #429464)
+
+ * debian/control: Switch from $Source-Version to $source:Version and
+ $binary:Version (lintian)
+
+ -- Dirk Eddelbuettel Mon, 18 Jun 2007 08:09:11 -0500
+
+r-base (2.5.1~20070614-1) unstable; urgency=low
+
+ * First 'beta' of R 2.5.1 expected to be released on June 28
+
+ * debian/r-cran.mk: Add dpatch.mk to debian/rules stanza
+
+ -- Dirk Eddelbuettel Thu, 14 Jun 2007 21:36:05 -0500
+
+r-base (2.5.1~20070530-1) unstable; urgency=low
+
+ * R-patched as of 2007-05-30
+
+ -- Dirk Eddelbuettel Thu, 31 May 2007 16:05:30 -0500
+
+r-base (2.5.1~20070513-1) unstable; urgency=low
+
+ * R-patched as of 2007-05-13
+
+ * First release with new upstream support for DESTDIR
+
+ -- Dirk Eddelbuettel Mon, 14 May 2007 08:57:08 -0500
+
+r-base (2.5.0-2) unstable; urgency=low
+
+ * src/nmath/standalone/Makefile.in,src/scripts/Makefile.in,
+ src/unix/Makefile.in: Applied patch by Martyn Plummer which
+ brings R closer to standard GNU behaviour with respect to
+ 'make install' redirection. In particular, this fixes the
+ new binary /usr/bin/Rscript which was broken in 2.5.0-1, also
+ corrects /usr/pkgconfig/libR.pc, adds the a new file
+ /usr/pkgconfig/libRmath.pc (for r-mathlib) and also corrects
+ /usr/bin/R which we used to patch post-'make install'.
+
+ * debian/control: Added Depends: for r-recommended on r-cran-rcompgen
+ as this package is now in Debian unstable.
+
+ * /etc/ld.so.conf.d/R.conf: Added new file so that libR.so and
+ libRlapack.so will be known to ld.so
+
+ * debian/rules: Call configure with --enable-memory-profiling
+
+ -- Dirk Eddelbuettel Wed, 2 May 2007 21:17:47 -0500
+
+r-base (2.5.0-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Dirk Eddelbuettel Tue, 24 Apr 2007 06:09:00 -0500
+
+r-base (2.5.0~20070422-1) unstable; urgency=low
+
+ * First 'rc' package of R 2.5.0 expected to be released next week
+
+ -- Dirk Eddelbuettel Mon, 23 Apr 2007 08:12:25 -0500
+
+r-base (2.5.0~20070412-1) unstable; urgency=low
+
+ * First 'beta release of R 2.5.0 expected to be released later this month
+
+ * debian/r-cran.mk: Added test for value of 'Priority: in DESCRIPTION which
+ is used for the choice of the install directory below $R_HOME
+
+ -- Dirk Eddelbuettel Fri, 13 Apr 2007 14:14:41 -0500
+
+r-base (2.5.0~20070407-1) unstable; urgency=low
+
+ * First 'alpha' release of R 2.5.0 expected to be released later this month
+
+ * debian/rules: Configure R to use original zip and unzip instead
+ of the 'mini' variant as some packages want a -q option for unzip.
+ * debian/control: Switch Depends: from zlib-bin to 'zip, unzip'
+
+ * debian/r-cran.mk: Allow for optional $(debRreposname) to allow
+ automated switching from CRAN builds to BioC builds.
+ Thanks to Steffen Moeller for the patch.
+
+ * debian/r-cran.mk: Allow for options $(makeFlags) to be passed to
+ R CMD INSTALL -- for example the RQuantLib package makes use of this
+
+ -- Dirk Eddelbuettel Sun, 8 Apr 2007 06:56:08 -0500
+
+r-base (2.4.1-2) unstable; urgency=low
+
+ * src/main.c: Applied patch provided by Samuel Thibault to allow builds
+ on hurd-i386 which (still) lacks SA_SIGINFO. Bug report also forwarded
+ upstream, and R 2.5.0 should have a fix too. (Closes: #407358)
+
+ -- Dirk Eddelbuettel Sat, 27 Jan 2007 13:12:13 -0600
+
+r-base (2.4.1-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * Debian package for 'unstable' as Debian 4.0 ('etch') is frozen
+
+ -- Dirk Eddelbuettel Mon, 18 Dec 2006 08:53:09 -0600
+
+r-base (2.4.1~20061205-1) unstable; urgency=low
+
+ * First beta package of the upcoming R 2.4.1 scheduled for December 18
+
+ -- Dirk Eddelbuettel Wed, 6 Dec 2006 22:51:18 -0600
+
+r-base (2.4.0.20061125-1) unstable; urgency=low
+
+ * New upstream version patch version dated 2006-11-03
+ -- a new R 2.4.1 release should arrive in just a few weeks
+ * debian/r-base-core.postinst: Rewrote paperconf handling one
+ more, with thanks to Marc Glisse for another good suggestion
+
+ -- Dirk Eddelbuettel Sun, 26 Nov 2006 18:21:16 -0600
+
+r-base (2.4.0.20061103-1) unstable; urgency=low
+
+ * New upstream version patch version dated 2006-11-03
+ -- a new R 2.4.1 release may arrive in a few weeks
+
+ -- Dirk Eddelbuettel Thu, 2 Nov 2006 21:50:13 -0600
+
+r-base (2.4.0.20061029-2) unstable; urgency=low
+
+ * debian/r-cran.mk: Another brown paperbag fix, this time for the logic
+
+ -- Dirk Eddelbuettel Sun, 29 Oct 2006 17:36:36 -0600
+
+r-base (2.4.0.20061029-1) unstable; urgency=low
+
+ * New upstream version patch version taken from svn as of 2006-10-29
+ -- a new R 2.4.1 release may arrive in a few weeks
+
+ * debian/r-cran.mk: Brown paperbag fix replacing space with tabs
+
+ -- Dirk Eddelbuettel Sun, 29 Oct 2006 11:35:16 -0600
+
+r-base (2.4.0.20061027-1) unstable; urgency=low
+
+ * New upstream version patch version dated 2006-10-27
+ -- a proper R 2.4.1 is not expected until December 2006
+
+ * debian/r-base-core.postinst: Rewrote paperconf handling (Closes: #394114)
+ * debian/R.bash_completion: use updated version from Deepayan Sarkar
+ * debian/r-cran.mk: If present, also install lintian overrides file
+
+ -- Dirk Eddelbuettel Sat, 28 Oct 2006 20:11:10 -0500
+
+r-base (2.4.0-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * debian/rules: Link /usr/share/texmf/tex/latex/R to ../../../R/share/texmf,
+ instead of the older link into /usr/lib (Closes: #390751)
+
+ -- Dirk Eddelbuettel Tue, 3 Oct 2006 07:07:02 -0500
+
+r-base (2.4.0~rc20060926-1) unstable; urgency=low
+
+ * First release candidate of the upcoming R 2.4.0 planned for October 3
+
+ * debian/rules: Install ldpaths in /etc/R and link back to $R_HOME/etc
+ * debian/rules: Patch javareconf to use /etc/R instead of $R_HOME/etc
+
+ -- Dirk Eddelbuettel Thu, 28 Sep 2006 20:15:03 -0500
+
+r-base (2.4.0~rc20060922-1) unstable; urgency=low
+
+ * First beta release of the upcoming R 2.4.0 planned for October 3
+
+ -- Dirk Eddelbuettel Sat, 23 Sep 2006 10:59:39 -0500
+
+r-base (2.4.0~rc20060919-1) unstable; urgency=low
+
+ * First alpha release of the upcoming R 2.4.0 planned for October 3
+
+ * debian/rules: Updated CFLAGS and FFLAGS to -O3, and set LDFLAGS
+ to -Wl,-O1 as suggested by upstream.
+ * debian/rules: Additional LDFLAGS options '-Bdirect,--hash-style=both'
+ will be added once binutils support them.
+
+ * debian/control: Use a '>=' instead of '=' in Depends: on r-base-core
+ for arch-independent package r-base, r-base-dev, r-recommend [lintian]
+
+ -- Dirk Eddelbuettel Tue, 19 Sep 2006 14:51:47 -0500
+
+r-base (2.3.1-3) unstable; urgency=low
+
+ * debian/r-doc-html.preinst: Apply one-char fix suggested by
+ Don Armstrong (Closes: #382696)
+ * debian/control: Added forgotten Conflicts: r-gnome
+
+ -- Dirk Eddelbuettel Tue, 29 Aug 2006 19:35:07 -0500
+
+r-base (2.3.1-2) unstable; urgency=low
+
+ * debian/control: Removed obsolete and deprecated r-gnome entry
+ * debian/control: Added Conflicts:, Replaces: and Provides: for
+ 'r-gnome (<= 2.3.1)' to r-base-core to finally replace r-gnome
+
+ * debian/r-doc-html.preinst: Added file with test for symlink
+ /usr/share/doc/r-doc-html/manual/ which may be left over from
+ a previous installation and needs to be removed for a clean
+ current installation (Closes: #376940)
+
+ * debian/rules: Correct softlink for /usr/share/doc/r-base-core/doc
+ into /usr/share/R/doc (Closes: #380126)
+
+ -- Dirk Eddelbuettel Fri, 28 Jul 2006 19:52:13 -0500
+
+r-base (2.3.1-1) unstable; urgency=low
+
+ * New upstream release released this morning
+
+ -- Dirk Eddelbuettel Thu, 1 Jun 2006 06:14:26 -0500
+
+r-base (2.3.0.svn38197-1) unstable; urgency=low
+
+ * Second beta release of the upcoming R 2.3.1 scheduled for June 1
+
+ -- Dirk Eddelbuettel Fri, 26 May 2006 06:09:03 -0500
+
+r-base (2.3.0.svn38119-1) unstable; urgency=low
+
+ * First beta release of the upcoming R 2.3.1 scheduled for June 1
+
+ * debian/control: Standards-Version: increased to 3.7.2
+
+ * debian/r-cran.mk: Small improvements
+
+ -- Dirk Eddelbuettel Fri, 19 May 2006 20:15:30 -0500
+
+r-base (2.3.0-1) unstable; urgency=low
+
+ * New upstream version 2.3.0 released this morning
+
+ -- Dirk Eddelbuettel Mon, 24 Apr 2006 09:30:57 -0500
+
+r-base (2.2.1.svn37779-1) unstable; urgency=low
+
+ * Second beta release of the upcoming R 2.3.0 scheduled for April 24
+
+ * src/main/version.c: Upstream fix for 'R --version' (Closes: #361968)
+
+ -- Dirk Eddelbuettel Sat, 15 Apr 2006 16:30:20 -0500
+
+r-base (2.2.1.svn37715-1) unstable; urgency=low
+
+ * First beta release of the upcoming R 2.3.0 scheduled for April 24
+
+ * debian/rules: On ppc64, add -mminimal-toc to compiler flags
+ Thanks to Andreas Jochens for the patch. (Closes: #361604)
+
+ -- Dirk Eddelbuettel Sun, 9 Apr 2006 07:40:48 -0500
+
+r-base (2.2.1.svn37668-1) unstable; urgency=low
+
+ * Second alpha release of the upcoming R 2.3.0 planned for April 24
+
+ * configure{,.ac}: Upstream fix also selecting -fPIC on s390* which is
+ less invasive than the rushed and uncoordinated binary NMU below. Please
+ consider talking to the Debian maintainer, or R Core, before making
+ undifferentiated wholesale changes to the build process. (Closes: #361219)
+
+ -- Dirk Eddelbuettel Sat, 8 Apr 2006 09:18:09 -0500
+
+r-base (2.2.1.svn37642-1.1) unstable; urgency=low
+
+ * Non-maintainer upload.
+ * Always build with -fPIC. (closes: #361219)
+
+ -- Bastian Blank Fri, 7 Apr 2006 08:59:15 +0000
+
+r-base (2.2.1.svn37642-1) unstable; urgency=low
+
+ * First alpha release of the upcoming R 2.3.0 planned for April 24
+
+ * debian/r-cran.mk: New file to be used as debian/rules for r-cran-*
+ * debian/rules: Accomodate installation of cran.mk into r-base-dev
+
+ * debian/control: Set gcc and gfortran Build-Depends: to version 4
+ * debian/control: Likewise for Depends: of r-base-dev
+
+ * debian/rules: Add -std=gnu99 to C compiler flags, and split and
+ slightly reorganize compiler flags and optimization options
+
+ * debian/{r-base-core,r-mathlib}.lintian: Added a few entries
+
+ -- Dirk Eddelbuettel Tue, 4 Apr 2006 17:55:51 -0500
+
+r-base (2.2.1-6) unstable; urgency=medium
+
+ * debian/r-base-core.preinst: The symbolic link /usr/lib/R/share
+ introduced in -4 prevents the directory added in -5 to be created
+ so remove if found in the preinst.
+
+ * Urgency still set up to medium so that testing and unstable users get
+ the fix quickly.
+
+ -- Dirk Eddelbuettel Mon, 6 Feb 2006 12:00:21 -0600
+
+r-base (2.2.1-5) unstable; urgency=medium
+
+ * debian/build-help.pl: Empty stanza to just print warning when called.
+ * debian/rules: Install that quasi-empty file debian/build-help.pl as
+ /usr/lib/R/share/perl/build-help.pl so that the not-yet-updated
+ r-cran-* et al add-on packages for R do not fail now that the upstream
+ build-help.pl is install in /usr/share/R/share/perl/. The softlink
+ solution introduced in 2.2.1-4 fails for upgrades on testing where
+ /usr/lib/R/share/ already exists as a directory.
+
+ * Urgency set up to medium so that testing users get the fix quickly.
+ No other changes than creation of the two-liner build-help.pl
+
+ -- Dirk Eddelbuettel Mon, 6 Feb 2006 09:23:14 -0600
+
+r-base (2.2.1-4) unstable; urgency=low
+
+ * debian/rules: Until the postinst and postrm calls in all r-cran-*
+ packages have been updated, add a transitional link so we can call
+ /usr/lib/R/share/perl/build-help.pl (Closes: #349637)
+
+ -- Dirk Eddelbuettel Tue, 24 Jan 2006 07:13:34 -0600
+
+r-base (2.2.1-3) unstable; urgency=low
+
+ * Re-wrote parts of debian/* to take advantage of recent upstream changes
+ permitting installation of (most) files outside of /usr/lib/R;
+ * debian/rules: Use configure options
+ --datadir=/usr/share/R/share and
+ --includedir=/usr/share/R/include
+ as well as 'make install' targets
+ rsharedir, rincludedir, and rdocdir
+ * debian/r-{base-html.{files,dirs}, doc-pdf.{files,links},
+ doc-html.{file,links}}:
+ updated accordingly to refer to /usr/share/R/* instead of /usr/lib/R
+ * For R itself (but not for packages), architecture-independent files
+ of r-base-core now install below /usr/share/R (Closes: #300765)
+
+ * debian/control: Added Build-Depends: for libx11-dev, libxt-dev, x-dev
+ (though the existing Build-Depends on tcl/tk effectively cover this).
+ Credits for the suggestion go to the xlibs-split-check script .
+
+ -- Dirk Eddelbuettel Sat, 21 Jan 2006 18:14:37 -0600
+
+r-base (2.2.1-2) unstable; urgency=low
+
+ * debian/control: Remove Build-Depends: on libpaperg-dev as we do not
+ actually build against libpaper anyway (Closes: #346403)
+ * debian/control: Add Depends: on libpaper-utils to r-base-core,
+ and remove different Suggests: of libpaperg
+
+ * debian/control: Update Standards-Version: to 3.6.2
+ * debian/control: Change Architecture: any for empty r-recommended
+
+ -- Dirk Eddelbuettel Sat, 7 Jan 2006 20:18:06 -0600
+
+r-base (2.2.1-1) unstable; urgency=low
+
+ * New upstream version 2.2.1 released this morning
+
+ * debian/control: Remove unnecessary f2c from Depends: in r-base-dev
+ * debian/rules: Set DH_COMPAT=4
+
+ -- Dirk Eddelbuettel Tue, 20 Dec 2005 06:18:38 -0600
+
+r-base (2.2.0.rc.20051214-1) unstable; urgency=low
+
+ * Second beta release of the upcoming R 2.2.1 planned for December 20
+
+ -- Dirk Eddelbuettel Thu, 15 Dec 2005 16:25:43 -0600
+
+r-base (2.2.0.rc.20051206-1) unstable; urgency=low
+
+ * First beta release of the upcoming R 2.2.1 planned for December 20
+
+ * debian/rules: Install bash completion file debian/R.bash_completion
+ by Deepayan Sarkar and announced to r-devel on 2005-11-30
+
+ -- Dirk Eddelbuettel Wed, 7 Dec 2005 19:34:47 -0600
+
+r-base (2.2.0.final-4) unstable; urgency=low
+
+ * debian/rules: Really skip 'make check' on hppa (Closes: #333462)
+
+ -- Dirk Eddelbuettel Mon, 24 Oct 2005 18:59:16 -0500
+
+r-base (2.2.0.final-3) unstable; urgency=low
+
+ * debian/rules: Skip 'make check' on hppa (Closes: #333462)
+
+ -- Dirk Eddelbuettel Mon, 24 Oct 2005 08:53:22 -0500
+
+r-base (2.2.0.final-2) unstable; urgency=low
+
+ * Rebuilt with properly renamed .orig.tar.gz (Closes: #332586)
+
+ -- Dirk Eddelbuettel Fri, 7 Oct 2005 21:20:16 -0500
+
+r-base (2.2.0.final-1) unstable; urgency=low
+
+ * New upstream version 2.2.0 released today, following six
+ Debian pre-releases (and a repeat of a version number snafu made
+ years ago, hence the need for the '.final')
+
+ -- Dirk Eddelbuettel Thu, 6 Oct 2005 21:18:53 -0500
+
+r-base (2.2.0.beta.20050929-1) unstable; urgency=low
+
+ * Second weekly beta release (using 2005-09-22 candidate) of R 2.2.0
+
+ * debian/rules: Call configure with LIBnn=lib to enforce use of
+ /usr/lib everywhere, including amd64 (Closes: #329952)
+
+ * share/perl/build-help.pl: Wrote patch to re-enable deprecated --htmllists
+ argument as a no-op so that our r-cran-* postinst files can call it.
+
+ -- Dirk Eddelbuettel Thu, 29 Sep 2005 21:45:12 -0500
+
+r-base (2.2.0.beta.20050922-2) unstable; urgency=low
+
+ * debian/rules: Create softlink from R's TeX files (used for doc.
+ and Sweave) into the texmf hierarchy. (Thanks, Gregor Gorjanc)
+ * debian/r-base-core.dirs: Add 'usr/share/texmf/tex/latex'
+ * debian/r-base-core.postinst: Call texhash if it exists
+
+ * Really re-apply the Perl fix (share/perl/{build-help.pl,R/Rdlists.pm)
+ to maintain compatibility with all the r-cran-* packages postinst
+ (Closes: #330085)
+
+ -- Dirk Eddelbuettel Sun, 25 Sep 2005 16:07:07 -0500
+
+r-base (2.2.0.beta.20050922-1) unstable; urgency=low
+
+ * First beta release candidate (dated 2005-09-22) of R 2.2.0
+
+ * Following prior practice, this release is designated for unstable
+ after the two first alpha releases in experiment.
+
+ * share/perl/build-help.pl, share/perl/R/Rdlists.pm: As in the previous
+ snapshot, fall back to R 2.1.1 code to support other r-cran-* packages
+
+ -- Dirk Eddelbuettel Thu, 22 Sep 2005 21:10:12 -0500
+
+r-base (2.2.0.alpha.20050915-1) experimental; urgency=low
+
+ * Second alpha release of the upcoming R 2.2.0 planned for October 6
+
+ * share/perl/build-help.pl, share/perl/R/Rdlists.pm: As in the previous
+ snapshot, fall back to R 2.1.1 code to support other r-cran-* packages
+
+ -- Dirk Eddelbuettel Thu, 15 Sep 2005 19:37:11 -0500
+
+r-base (2.2.0.alpha.20050908-2) experimental; urgency=low
+
+ * debian/rules: Also re-set the newly added variables R_SHARE_DIR,
+ R_INCLUDE_DIR and R_DOC_DIR in /usr/bin/R (Closes: #327446)
+
+ * share/perl/build-help.pl: Revert to the version from R 2.1.1 as
+ we need the now deprecated --htmllists argument in the postinst
+ and postrm scripts of several dozen r-cran-* packages.
+ * share/perl/R/Rdlists.pm: Carry build_htmlpkglists() and read_titles()
+ over from 2.1.1 to support the --htmllists code
+
+ -- Dirk Eddelbuettel Sat, 10 Sep 2005 13:12:08 -0500
+
+r-base (2.2.0.alpha.20050908-1) experimental; urgency=low
+
+ * First alpha release of the upcoming R 2.2.0 planned for October 6
+
+ * debian/{control,rules}: Build-Depends switched to gcc-4.0
+ by removing "gcc-3.4, g++-3.4, g77-3.4"
+
+ -- Dirk Eddelbuettel Thu, 8 Sep 2005 22:35:50 -0500
+
+r-base (2.1.1-1) unstable; urgency=low
+
+ * New upstream version 2.1.1 released today
+
+ * debian/control: Remove redundant Build-Depends on 'mawk | gawk | awk'
+
+ -- Dirk Eddelbuettel Mon, 20 Jun 2005 18:50:41 -0500
+
+r-base (2.1.0.beta.20050613-1) unstable; urgency=low
+
+ * Upgraded to the R 2.1.1 beta release candidate dated 2005-06-13
+
+ * debian/rules: configure call with AWK="/usr/bin/awk" (Closes: #307683)
+ * debian/control: New Build-Depends on 'mawk | gawk | awk'
+
+ -- Dirk Eddelbuettel Mon, 13 Jun 2005 21:04:50 -0500
+
+r-base (2.1.0-1) unstable; urgency=low
+
+ * New upstream version 2.1.0 released today
+
+ -- Dirk Eddelbuettel Mon, 18 Apr 2005 20:24:26 -0500
+
+r-base (2.0.1.beta.20050410-1) unstable; urgency=low
+
+ * Upgraded to the R 2.1.0 beta release candidate dated 2005-04-10
+
+ * With R 2.1.0 scheduled to be released on April 18, this release
+ candidate will be uploaded to unstable to allow for wider testing
+
+ * debian/rules: Also copy new file 'repositories' to /etc/R and link back
+
+ -- Dirk Eddelbuettel Sun, 10 Apr 2005 21:12:25 -0500
+
+r-base (2.0.1.alpha.20050403-1) experimental; urgency=low
+
+ * Upgraded to the R 2.1.0 alpha release candidate dated 2005-04-03
+
+ * This upload is still slated for experimental; beta release
+ candidates of 2.1.0 will go into unstable
+
+ -- Dirk Eddelbuettel Sun, 3 Apr 2005 16:04:29 -0500
+
+r-base (2.0.1.alpha.20050322-1) experimental; urgency=low
+
+ * Initial attempt at packaging the upcoming R 2.1.0
+
+ * debian/rules: No longer install $RHOME/bin/Rdindex
+
+ * debian/rules: No longer build the Gnome GUI which has been
+ unbundled upstream as it was never fully completed
+ * debian/control: Update r-gnome Description
+ * debian/control: r-gnome is now Binary: all, removed ${shlibs:Depends}
+ and versioned (= ${Source-Version}) part of Depends on r-base-core
+ * debian/control: Reduce Build-Depends by libgnome-dev, libzvt-dev,
+ libgtkxmhtml-dev, libglade-gnome0-dev
+ * debian/r-gnome.NEWS: New file with message about removeal of UI
+
+ * debian/control: For r-base-dev, switched from the black magic
+ "g77 | m68k, f2c | not+m68k, type-handling" to "g77, f2c" as
+ type-handling no longer allows this (Closes: #296287)
+
+ * debian/r-mathlib.shlibs: Correct to 'libRmath 1 r-mathlib (>= 2.0)'
+ with thanks to Chris Lawrence
+
+ -- Dirk Eddelbuettel Mon, 21 Mar 2005 21:20:09 -0600
+
+r-base (2.0.1-4) unstable; urgency=low
+
+ * Removed erroneously left-over doc-base file (Closes: #296194)
+ * debian/r-doc-{html,pdf}.links: Link individual files, not the
+ entire manual directory, in order to circumvent a dhelp bug
+
+ -- Dirk Eddelbuettel Sun, 20 Feb 2005 17:24:07 -0600
+
+r-base (2.0.1-3) unstable; urgency=low
+
+ * debian/r-doc-html.doc-base.*: Added five doc-base control files
+ to register the html documentation with doc-base (Closes: #296089)
+
+ -- Dirk Eddelbuettel Sun, 20 Feb 2005 07:59:53 -0600
+
+r-base (2.0.1-2) unstable; urgency=low
+
+ * debian/control: Switch the Depends: on the helper package r-base-dev
+ to libreadline5-dev to help readline5 migration (Closes: #291655)
+ * debian/control: Also switch Build-Depends: to libreadline5-dev
+
+ -- Dirk Eddelbuettel Sun, 23 Jan 2005 13:39:50 -0600
+
+r-base (2.0.1-1) unstable; urgency=medium
+
+ * New upstream release
+ * Urgency medium as this version contains numerous upstream fixes,
+ as well as Debian fixes from 2.0.0-4 that have are not yet in testing
+
+ * debian/control: Add r-recommended to Depends: for r-base
+
+ -- Dirk Eddelbuettel Mon, 15 Nov 2004 09:39:01 -0600
+
+r-base (2.0.0-4) unstable; urgency=medium
+
+ * Urgency medium to get the fix into the testing distribution in which
+ r-recommended currently has insufficiently detailed Depends:
+ * debian/control: Change Depends: for r-recommended to be versioned, and
+ impose a minimum standard of package versions rebuilt under R 2.0.0
+ as required by the underlying lazyloading changes (Closes: #278528)
+
+ -- Dirk Eddelbuettel Wed, 27 Oct 2004 20:26:31 -0500
+
+r-base (2.0.0-3) unstable; urgency=low
+
+ * Two improvements suggested by Kurt Hornik:
+ - debian/control: r-base now Depends: on r-base-core (= ${Source-Version})
+ - debian/control: Fix MASS book title in Description: of r-recommends
+
+ * Reorganisation of r-mathlib suggested and tested by Faheem Mitha:
+ - debian/control: r-mathlib now only Recommends: insteads of Depends:
+ on r-base-core and r-base-dev (Closes: #276038)
+ - debian/rules: Small changes to give r-mathlib its own doc directory
+ - debian/r-mathlib.links: Renamed to r-mathlib.links.unused disable
+
+ * Update to use of Lapack code as suggested by Doug Bates:
+ - debian/rules: Set Lapack back to --with-lapack=no
+ - debian/control: Remove "lapack3-dev | atlas3-base-dev" from Build-Depends
+ - debian/control: Remove "lapack3-dev | atlas3-base-dev | liblapack-3.so"
+ from Depends for r-base-dev as well
+ - debian/rules: Turn 'make check' back on (outside of arm)
+
+ -- Dirk Eddelbuettel Wed, 13 Oct 2004 20:12:30 -0500
+
+r-base (2.0.0-2) unstable; urgency=low
+
+ * src/main/startup.c: Removed 'static' on RestoreAction declaration
+ as recommend by Brian Ripley in bug report follow-up (Closes: #275791)
+
+ -- Dirk Eddelbuettel Mon, 11 Oct 2004 09:55:11 -0500
+
+r-base (2.0.0-1) unstable; urgency=low
+
+ * New upstream release
+
+ * src/library/tools/R/admin.R, src/scripts/INSTALL.in: Applied
+ small patch by Brian Ripley to address package build issues
+
+ -- Dirk Eddelbuettel Tue, 5 Oct 2004 17:53:51 -0500
+
+r-base (1.9.1.beta.20040929-1) experimental; urgency=low
+
+ * Upgraded to the R 2.0.0 beta release candidate dated 2004-09-29
+ * Still uploading to 'experimental' to keep 1.9.1-3 in testing
+
+ -- Dirk Eddelbuettel Wed, 29 Sep 2004 15:40:10 -0500
+
+r-base (1.9.1.beta.20040928-1) experimental; urgency=low
+
+ * Upgraded to the R 2.0.0 beta release candidate dated 2004-09-28
+ * Still uploading to 'experimental' to keep 1.9.1-3 in testing
+ * debian/rules: No longer install BUGS which is no longer in upstream sources
+
+ -- Dirk Eddelbuettel Tue, 28 Sep 2004 22:22:52 -0500
+
+r-base (1.9.1.beta.20040925-1) experimental; urgency=low
+
+ * Upgraded to the R 2.0.0 beta release candidate dated 2004-09-25
+ * Still uploading to 'experimental' to keep 1.9.1-3 in testing
+
+ -- Dirk Eddelbuettel Sat, 25 Sep 2004 08:43:01 -0500
+
+r-base (1.9.1.beta.20040921-1) experimental; urgency=low
+
+ * Upgraded to the R 2.0.0 beta release candidate dated 2004-09-21
+ * Still uploading to 'experimental' to keep 1.9.1-3 in testing
+
+ -- Dirk Eddelbuettel Tue, 21 Sep 2004 21:00:41 -0500
+
+r-base (1.9.1.alpha.20040912-1) experimental; urgency=low
+
+ * Upgraded to the R 2.0.0 alpha release candidate dated 2004-09-12
+ * Still uploading to 'experimental' as 1.9.1-3 is not yet in testing
+
+ -- Dirk Eddelbuettel Sun, 12 Sep 2004 15:44:38 -0500
+
+r-base (1.9.1.alpha.20040906-1) experimental; urgency=low
+
+ * Upgraded to the initial R 2.0.0 alpha release candidate dated 2004-09-06
+
+ * Distribution set to 'experimental' as we would like the previous release
+ 1.9.1-3 to migrate to 'testing' first; as that has happened we will make
+ alpha and/or beta releases of 2.0.0 to 'unstable' prior to the formal
+ release
+
+ -- Dirk Eddelbuettel Mon, 6 Sep 2004 22:00:56 -0500
+
+r-base (1.9.1-3) unstable; urgency=low
+
+ * debian/control: Expanded Depends for r-base-dev to include virtual
+ packages libblas-3.so and liblapack-3.so as final alternatives.
+ * debian/copyright: Author list updated as suggested by Kurt Hornik
+ * src/modules/gnome/system.c: Change 'R_Interactive = 1' instead of the
+ isatty() call, as suggested by Brian D. Ripley (Closes: #269107)
+
+ -- Dirk Eddelbuettel Tue, 31 Aug 2004 21:49:39 -0500
+
+r-base (1.9.1-2) unstable; urgency=low
+
+ * debian/r-base-core.postinst: Papersize code conditional on paperconf
+ * debian/control: Added Suggests for libpaper-utils
+
+ -- Dirk Eddelbuettel Tue, 22 Jun 2004 06:33:26 -0500
+
+r-base (1.9.1-1) unstable; urgency=low
+
+ * Upgraded to version 1.9.1 released today
+
+ * debian/rules: Configure with R_PAPERSIZE='letter'
+ * debian/r-base-core.postinst: Re-wrote papersize setting code
+
+ -- Dirk Eddelbuettel Mon, 21 Jun 2004 09:31:02 -0500
+
+r-base (1.9.0.beta.20040614-1) unstable; urgency=low
+
+ * Upgraded to the initial 1.9.1 beta release candidate of 2004-06-14
+
+ -- Dirk Eddelbuettel Mon, 14 Jun 2004 15:02:14 -0500
+
+r-base (1.9.0.alpha.20040607-1) unstable; urgency=low
+
+ * Upgraded to the initial 1.9.1 alpha release candidate of 2004-06-07
+
+ * Contains upstream fix for version number in search entry of CRAN
+ packages, with thanks to Kurt Hornik (Closes: #248430)
+
+ * debian/Renviron-R_PAPERSIZE.patch: New patch to set R_PAPERSIZE in
+ /etc/R/Renviron by respecting both a prior setting and the value
+ in /etc/papersize, with thanks to Matej Cepl (Closes: #245525)
+
+ * debian/control: Remove unversioned g++ from Build-Depends [ lintian ]
+ * debian/control: r-mathlib, r-recommended get versioned Depends
+ on r-base-core as doc directories are symlinked [ lintian ]
+
+ -- Dirk Eddelbuettel Tue, 8 Jun 2004 07:00:41 -0500
+
+r-base (1.9.0-1) unstable; urgency=low
+
+ * Upgraded to version 1.9.0 released today
+
+ -- Dirk Eddelbuettel Mon, 12 Apr 2004 07:30:12 -0500
+
+r-base (1.8.1.cvs.20040410-1) unstable; urgency=low
+
+ * Upgraded to beta release candidate 2004-04-10 of R 1.9.0
+
+ -- Dirk Eddelbuettel Sun, 11 Apr 2004 22:27:32 -0500
+
+r-base (1.8.1.cvs.20040331-1) unstable; urgency=low
+
+ * Upgraded to beta release candidate 2004-03-31 of R 1.9.0
+
+ -- Dirk Eddelbuettel Thu, 1 Apr 2004 14:50:52 -0600
+
+r-base (1.8.1.cvs.20040321-1) unstable; urgency=low
+
+ * Upgraded to beta release candidate 2004-03-21 of R 1.9.0
+
+ -- Dirk Eddelbuettel Sun, 21 Mar 2004 18:35:03 -0600
+
+r-base (1.8.1.cvs.20040314-1) unstable; urgency=low
+
+ * Upgraded to release candidate 2004-03-14 of R 1.9.0
+
+ -- Dirk Eddelbuettel Sun, 14 Mar 2004 17:37:03 -0600
+
+r-base (1.8.1.cvs.20040307-1) unstable; urgency=low
+
+ * Upgraded to release candidate 2004-03-07 of R 1.9.0
+
+ -- Dirk Eddelbuettel Sun, 7 Mar 2004 08:29:00 -0600
+
+r-base (1.8.1.cvs.20040229-2) unstable; urgency=low
+
+ * debian/control: Declare Replaces: r-recommended as well for r-base-html
+ and r-base-latex as they contain parts of 'grid' which used to be in
+ r-recommended, but is now in r-base-core and these two (Closes: #235891)
+
+ * debian/rules: Do not ship usr/share/info/dir(.old) (Closes: #235713)
+
+ -- Dirk Eddelbuettel Tue, 2 Mar 2004 20:33:18 -0600
+
+r-base (1.8.1.cvs.20040229-1) unstable; urgency=low
+
+ * Upgraded to release candidate 2004-02-29 of R 1.9.0
+
+ * debian/rules changes to configure call
+ --without-r-recommended (as r-recommended is now a meta-package)
+ --with-bzlib to override default of no
+ --with-pcre to override default of no
+ --with-zlib to override default of no
+ R_BROWSER=sensible-browser to not depend on mozilla
+
+ * debian/control: r-base-core Replace r-recommended (<= 1.8.1-1) as
+ the grid package moved
+
+ * debian/control: r-recommended is now a metapackage that depends on the
+ individual packages which are now part of the Debian distribution;
+ and added appropriate Depends for all of them
+ * debian/rules: Hence 'configure [...] --without-recommended-packages [...]'
+ * debian/control: Added Conflicts: r-recommended (<< 1.9.0) to r-base-core
+
+ * debian/rules: In make-arch target, now call "make docs" with
+ R_CMD_BUILD_HELP_OPTS="--txt --example" to build only the documentation
+ needed for binary-arch targets (thanks to Kurt Hornik for enabling this)
+
+ * debian/rules: configure with PAGER=/usr/bin/pager as all the good
+ reasons pointed out in #230524 regarding octave2.1 apply to R too
+
+ * debian/control: Depends for r-base-dev changed from the imperfect
+ "g77 | f2c" to to "g77 | m68k, f2c | not+m68k, type-handling" with
+ thanks to Wouter Verhelst
+
+ * debian/control: Changed Build-Depends from 'blas-dev (>=1.0-9),lapack-dev'
+ to 'refblas3-dev | atlas3-base-dev, lapack3-dev | atlas3-base-dev'
+ * debian/control: Dito for Depends: for r-base-dev
+ * debian/rules: Set configure arguments for refblas3/atlas3 and
+ lapack3/atlas3, respectively, instead of blas/atlas v2.
+
+ -- Dirk Eddelbuettel Sun, 29 Feb 2004 16:55:55 -0600
+
+r-base (1.8.1-2) unstable; urgency=low
+
+ * debian/control: Added to Build-Depends
+ libpaper-utils for paperconf
+ libjpeg62-dev for jpeg (thanks to Kurt Hornik for the suggestion)
+ libprce3-dev for pcre
+ linpng12-dev for png
+ zlib1g-dev for zlib
+
+ * debian/control: Added to Depends for r-base-dev
+ libjpeg62-dev, libpcre3-dev (thanks to Kurt Hornik for the suggestion)
+
+ -- Dirk Eddelbuettel Mon, 19 Jan 2004 10:45:47 -0600
+
+r-base (1.8.1-1) unstable; urgency=low
+
+ * Upgraded to version 1.8.1 released today
+
+ * debian/control: Move r-base-html and r-base-latex from the Depends: for
+ r-base to Recommends: as one cannot depend on packages of lower priority
+ * debian/rules: Use --without-blas on arm
+
+ -- Dirk Eddelbuettel Fri, 21 Nov 2003 10:09:48 -0600
+
+r-base (1.8.0.cvs.20031114-1) unstable; urgency=low
+
+ * Upgraded to the initial 1.8.1 beta release of 2003-11-14
+
+ -- Dirk Eddelbuettel Fri, 14 Nov 2003 19:13:43 -0600
+
+r-base (1.8.0.cvs.20031107-1) unstable; urgency=low
+
+ * Upgraded to the initial 1.8.1 alpha release of 2003-11-07
+ * debian/rules: Configure with R_PRINTCMD=/usr/bin/lpr (Closes: #219419)
+
+ -- Dirk Eddelbuettel Fri, 7 Nov 2003 19:56:48 -0600
+
+r-base (1.8.0.cvs.20031101-1) unstable; urgency=low
+
+ * Upgraded to 1.8.0 patched aka pre-1.8.1 as of 2003-11-01
+ * Also upgraded R-recommended via rsync
+ * debian/rules: make docs has to be called when binary-arch is built
+
+ -- Dirk Eddelbuettel Sat, 1 Nov 2003 18:58:09 -0600
+
+r-base (1.8.0.cvs.20031024-1) unstable; urgency=low
+
+ * Upgraded to 1.8.0 patched as of 2003-10-24
+ * Also upgraded R-recommended via rsync
+ * To avoid possible upgrade conflicts with pre-releases of 1.8.1, we
+ use previously used ".cvs.YYYYMMDD" naming convention for the package
+ * debian/rules: 'make {docs,help,html}' are now called in binary-indep
+ which was not possible with earlier versions of R; however as make
+ recommended implies make doc, we manually descend into its top dir.
+
+ -- Dirk Eddelbuettel Thu, 23 Oct 2003 15:21:35 -0500
+
+r-base (1.8.0-2) unstable; urgency=low
+
+ * With a big thanks to Camm Maguire for investigating this problem,
+ we are reverting back to the previously used setup of defaulting to
+ Blas while automagically switching to Atlas where installed:
+ - debian/rules: Patch R.sh.in to disable use of R_LD_LIBRARY_PATH (beyond
+ the required $R_HOME/nbin) which conflicts with Debian's transparent
+ switch of Atlas for Blas (as /usr/lib/libblas would be found instead)
+ - debian/rules: Configure again with --with-blas=blas
+ - debian/control: Hence remove Depends: on atlas2-base-dev | atlas2-dev
+ - debian/shlibs.local: Remove, no longer needed
+ - debian/rules: No longer need to postprocess Depends
+ - debian/rules: Other small cleanups
+
+ -- Dirk Eddelbuettel Thu, 16 Oct 2003 20:13:32 -0500
+
+r-base (1.8.0-1) unstable; urgency=low
+
+ * Upgraded to version 1.8.0 released today
+
+ -- Dirk Eddelbuettel Wed, 8 Oct 2003 10:10:41 -0500
+
+r-base (1.7.1.cvs.20031004-1) unstable; urgency=low
+
+ * Upgraded to release candidate 1.8.0beta_2003-10-04 of R 1.8.0
+ * debian/control: Change Depends: to atlas2-base-dev | atlas2-dev
+
+ -- Dirk Eddelbuettel Sat, 4 Oct 2003 07:39:13 -0500
+
+r-base (1.7.1.cvs.20030927-1) unstable; urgency=low
+
+ * Upgraded to release candidate 1.8.0beta_2003-09-27 of R 1.8.0
+ * debian/control: Add Depends: on atlas2-dev for r-base-dev
+
+ -- Dirk Eddelbuettel Sat, 27 Sep 2003 15:58:45 -0500
+
+r-base (1.7.1.cvs.20030920-1) unstable; urgency=low
+
+ * Upgraded to release candidate 1.8.0alpha_2003-09-20 of R 1.8.0
+ * debian/{r-base-core,r-gnome}.menu: Small beautifications
+
+ -- Dirk Eddelbuettel Sat, 20 Sep 2003 08:02:54 -0500
+
+r-base (1.7.1.cvs.20030913-1) unstable; urgency=low
+
+ * Upgraded to release candidate 1.8.0alpha_2003-09-13 of R 1.8.0
+
+ -- Dirk Eddelbuettel Sat, 13 Sep 2003 09:59:45 -0500
+
+r-base (1.7.1.cvs.20030906-1) unstable; urgency=low
+
+ * Upgraded to release candidate 2003-09-06 of R 1.8.0
+
+ -- Dirk Eddelbuettel Sat, 6 Sep 2003 15:21:02 -0500
+
+r-base (1.7.1.cvs.20030830-1) unstable; urgency=low
+
+ * Upgraded to release candidate 2003-08-30 of R 1.8.0
+
+ -- Dirk Eddelbuettel Sat, 30 Aug 2003 09:56:10 -0500
+
+r-base (1.7.1.cvs.20030822-1) unstable; urgency=low
+
+ * Upgraded to release candidate 2003-08-22 of R 1.8.0
+ * debian/control: Standards-Version increased to 3.6.1.0
+
+ -- Dirk Eddelbuettel Fri, 22 Aug 2003 20:25:52 -0500
+
+r-base (1.7.1.cvs.20030814-1) unstable; urgency=low
+
+ * Upgraded to release candidate 2003-08-14 of R 1.7.2 (or 1.8.0)
+
+ -- Dirk Eddelbuettel Thu, 14 Aug 2003 20:39:05 -0500
+
+r-base (1.7.1.cvs.20030808-1) unstable; urgency=low
+
+ * Upgraded to release candidate 2003-08-08 of R 1.7.2 (or 1.8.0)
+ * Upstream release candidate sources do not contain the source for the
+ r-recommended package so tools/rsync-recommended was used to obtain
+ these and a new, Debian-only, orig.tar.gz of both was created
+ * debian/control: r-base-dev now has a versioned Depends on r-base-core
+ which requires equal version numbers between the two (Closes: #199295)
+ * debian/control: Upgraded Standards-Version to 3.6.0
+
+ -- Dirk Eddelbuettel Fri, 8 Aug 2003 20:08:49 -0500
+
+r-base (1.7.1-1) unstable; urgency=low
+
+ * New upstream version 1.7.1 released today
+
+ -- Dirk Eddelbuettel Mon, 16 Jun 2003 19:36:45 -0500
+
+r-base (1.7.0.cvs.20030607-1) unstable; urgency=low
+
+ * Upgraded to initial release candidate (dated 2003-06-07) of R 1.7.1
+ * debian/{control,rules}: Switch back to default compiler version as 3.3
+ is in unstable and testing; m68k still needs f2c for Fortan code
+
+ -- Dirk Eddelbuettel Sat, 7 Jun 2003 12:23:59 -0500
+
+r-base (1.7.0.cvs.20030602-1) unstable; urgency=low
+
+ * Upgraded to initial release candidate (dated 2003-06-02) of R 1.7.1
+ * debian/{rules,control}: Try f2c on m68k as a last resort
+
+ -- Dirk Eddelbuettel Mon, 2 Jun 2003 21:31:42 -0500
+
+r-base (1.7.0.cvs.20030526-1) unstable; urgency=low
+
+ * Upgraded to release candidate 2003-05-26 of R 1.7.1
+ * Manually rsync'ed r-recommendeds sources as R-patched pre-release do
+ not comprise r-recommended, also manually re-built upstream tarball
+ * debian/control: Require gcc/g++/g77-3.2 as version 3.3 is in unstable
+ gcc 3.2 works fine everywhere with the exception of m68k (Closes: #194175)
+ * debian/shlibs.local: Have libatlas imply either the actual atlas2-base
+ or the virtual atlas2 provided by tuned libraries (Closes: #193831)
+ * debian/control: Added 'xpdf-reader | pdf-viewer' to Build-Depends
+ * debian/control: Upgraded Standards-Version to 3.5.10
+
+ -- Dirk Eddelbuettel