--- r-noncran-lindsey-1.0.20071024.orig/debian/changelog +++ r-noncran-lindsey-1.0.20071024/debian/changelog @@ -0,0 +1,106 @@ +r-noncran-lindsey (1.0.20071024-1.1build1) oneiric; urgency=low + + * gfortran-4.6 rebuild. + + -- Matthias Klose Sun, 11 Sep 2011 11:22:15 +0000 + +r-noncran-lindsey (1.0.20071024-1.1) unstable; urgency=medium + + * Non-maintainer upload. + * Fix bashism in debian/rules (Closes: #477619) + * Bump Standards-Version to 3.8.0 + + -- Chris Lamb Sat, 07 Jun 2008 19:37:08 +0100 + +r-noncran-lindsey (1.0.20071024-1) unstable; urgency=low + + * New upstream release. + * Rebuild for gfortran transition. + + -- Chris Lawrence Wed, 05 Mar 2008 20:21:06 -0600 + +r-noncran-lindsey (1.0.20051208-2) unstable; urgency=low + + * Rework build system using dbs. + * Patch implicit pointer conversion bug in rmutil. (Closes: #371159) + + -- Chris Lawrence Wed, 7 Jun 2006 18:08:38 -0400 + +r-noncran-lindsey (1.0.20051208-1) unstable; urgency=low + + * New upstream release. + * Update upstream URLs again. + * All build problems seem to be resolved in this release. + (Closes: #361434, #368576) + * Fixes similar to those in the NMU by Aurelien Jarno appear to have been + merged upstream. (Closes: #302873, #275892) + + -- Chris Lawrence Thu, 1 Jun 2006 16:39:18 -0400 + +r-noncran-lindsey (1.0.20041008-1) unstable; urgency=low + + * New upstream releases. + * Update upstream URLs. + * Rebuild for R 2.0.0. + + -- Chris Lawrence Fri, 8 Oct 2004 00:11:58 -0500 + +r-noncran-lindsey (1.0.20040109-1) unstable; urgency=low + + * New upstream releases. + * Fix ordinal build problem reported by Markus Jantti. + + -- Chris Lawrence Mon, 23 Feb 2004 02:47:46 -0600 + +r-noncran-lindsey (1.0.20031022-1) unstable; urgency=low + + * New upstream releases. + * Fix FTBFS with R 1.8.0. (Closes: #216363) + + -- Chris Lawrence Wed, 22 Oct 2003 13:22:27 -0500 + +r-noncran-lindsey (1.0.20030525-3) unstable; urgency=low + + * Change build-depends to use f2c on m68k. (Fixes FTBFS.) + + -- Chris Lawrence Fri, 20 Jun 2003 22:10:49 -0500 + +r-noncran-lindsey (1.0.20030525-2) unstable; urgency=low + + * Update build-depends. (Closes: #198007) + + -- Chris Lawrence Fri, 20 Jun 2003 01:10:16 -0500 + +r-noncran-lindsey (1.0.20030525-1) unstable; urgency=low + + * New upstream release. + * Move library files to site-library; require R 1.7.0 or later. + * Remove superfluous COPYING files. + * Update to standards-version 3.5.10. + + -- Chris Lawrence Wed, 18 Jun 2003 17:04:05 -0500 + +r-noncran-lindsey (1.0.20020506-1) unstable; urgency=low + + * New upstream release. + * Built against r-base-dev 1.5.0. + + -- Chris Lawrence Tue, 7 May 2002 16:04:05 -0500 + +r-noncran-lindsey (0.9.20020428-1) unstable; urgency=low + + * Renamed package to comply with proposed r-* package naming policy and + to better describe the contents of the package. + * Provide/conflict/replace r-nonlinear. + * Fixed up short description, as other packages provide various + nonlinear models for R as well. + * Updated to upstream as of April 28. For details see the upstream + changelog. + + -- Chris Lawrence Mon, 29 Apr 2002 14:43:06 -0500 + +r-nonlinear (0.9.20020417-1) unstable; urgency=low + + * Initial Debian release. (Closes: #143716) + + -- Chris Lawrence Sat, 20 Apr 2002 01:49:02 -0500 --- r-noncran-lindsey-1.0.20071024.orig/debian/rules +++ r-noncran-lindsey-1.0.20071024/debian/rules @@ -0,0 +1,101 @@ +#!/usr/bin/make -f +# debian/rules file for the Debian GNU/Linux r-nonlinear package +# Copyright 2001 by Douglas M. Bates +# Copyright 2001 - 2002 by Dirk Eddelbuettel +# Copyright 2002 by Chris Lawrence + +package = r-noncran-lindsey + +debbase := $(CURDIR)/debian +debtmp := $(debbase)/$(package) +debdoc := $(debtmp)/usr/share/doc/$(package) +debRlib := $(debtmp)/usr/lib/R/site-library + +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + +# This has to be exported to make some magic below work. +export DH_OPTIONS + +# the dbs rules +include /usr/share/dbs/dbs-build.mk + +ifeq (,$(DEB_BUILD_GNU_TYPE)) +include /usr/share/dbs/dpkg-arch.mk +endif + +get-orig-source: upstream +upstream: + set -e; for x in rmutil event gnlm growth repeated stable; do \ + wget -N http://popgen.unimaas.nl/~jlindsey/rcode/$$x.tgz; \ + done + wget -N http://popgen.unimaas.nl/~jlindsey/rcode/changes.txt + wget -N http://popgen.unimaas.nl/~plindsey/R/ordinal03.tgz + +build: build-stamp +build-stamp: $(patched) + dh_testdir + touch build-stamp + +clean: + dh_testdir + dh_testroot + rm -f build-stamp + -rm -f `find . -name "*~"` + -rm -rf $(debtmp) debian/files* core debian/substvars build + -rm -f doc/html/function.html doc/html/packages.html + rm -rf $(STAMP_DIR) $(SOURCE_DIR) + dh_clean + +install: DH_OPTIONS= +install: build + dh_testdir + dh_testroot + dh_clean -k + dh_installdirs + (cd $(BUILD_TREE); R CMD INSTALL -l $(debRlib) --clean rmutil event growth repeated stable gnlm ordinal) + rm -vf $(debRlib)/R.css + (find $(debRlib) -name 'COPYING' -print0 | xargs -0 rm -vf) + +# Build architecture-independent files here. +# Pass -i to all debhelper commands in this target to reduce clutter. +binary-indep: DH_OPTIONS=-i +binary-indep: build install + +# Build architecture-dependent files here. +# Pass -a to all debhelper commands in this target to reduce clutter. +binary-arch: DH_OPTIONS=-a +binary-arch: build install + dh_testdir + dh_testroot +# dh_installdebconf + dh_installdocs +# dh_installexamples +# dh_installmenu +# dh_installemacsen +# dh_installpam +# dh_installmime +# dh_installinit +# dh_installcron +# dh_installmanpages +# dh_installinfo +# install lintian "silencer" +# install -p -m 0644 debian/$(package).lintian \ +# $(debtmp)/usr/share/lintian/overrides/$(package) +# dh_undocumented + dh_installchangelogs changes.txt + dh_strip + dh_link + dh_compress + dh_fixperms +# dh_suidregister + dh_installdeb +# dh_makeshlibs +# dh_perl + dh_shlibdeps + dh_gencontrol + dh_md5sums + dh_builddeb + +binary: binary-indep binary-arch +.PHONY: build clean binary-indep binary-arch binary install --- r-noncran-lindsey-1.0.20071024.orig/debian/README.Debian +++ r-noncran-lindsey-1.0.20071024/debian/README.Debian @@ -0,0 +1,16 @@ +r-nonlinear for Debian +---------------------- + +This Debian package was created from the sources available at Jim +Lindsey's home page, http://alpha.luc.ac.be/~lucp0753/rcode.html, and +at Patrick Lindsey's home page, http://www.luc.ac.be/~plindsey/rlibs.html + +Portions of the packaging were derived from the packaging for the +r-recommended package by Douglas Bates and Dirk Eddelbuettel. + +In addition to Jim's home page, some additional examples are available at: + +http://www.la.utexas.edu/research/faculty/dpowers/book/ +(Particularly Chapter 6, which shows how to do ordered logit/probit) + + -- Chris Lawrence Sat, 20 Apr 2002 01:49:02 -0500 --- r-noncran-lindsey-1.0.20071024.orig/debian/control +++ r-noncran-lindsey-1.0.20071024/debian/control @@ -0,0 +1,39 @@ +Source: r-noncran-lindsey +Section: math +Priority: optional +Maintainer: Chris Lawrence +Homepage: http://popgen.unimaas.nl/~jlindsey/rcode.html +Standards-Version: 3.8.0 +Build-Depends: r-base-dev (>> 2.0.0), debhelper (>> 4), gfortran [!m68k], f2c [m68k], dbs + +Package: r-noncran-lindsey +Architecture: any +Depends: r-base-core (>> 2.0.0), ${shlibs:Depends} +Provides: r-nonlinear +Conflicts: r-nonlinear +Replaces: r-nonlinear +Description: GNU R libraries contributed by Jim and Patrick Lindsey + R is `GNU S' - A language and environment for statistical computing + and graphics. R is similar to the award-winning S system, which was + developed at Bell Laboratories by John Chambers et al. It provides a + wide variety of statistical and graphical techniques (linear and + nonlinear modelling, statistical tests, time series analysis, + classification, clustering, ...). + . + This is a collection of libraries for R that implement various nonlinear + regression and repeated measurements models. The following libraries + are included (all authored by Jim Lindsey, except as noted): + . + rmutil - Utilities for nonlinear regression and repeated measurements + gnlm - Generalized nonlinear regression models + stable - Probability functions and generalized regression models for + stable distributions + growth - Multivariate normal and elliptically-contoured repeated + measurements models + repeated - Non-normal repeated measurements models + event - Event history procedures and models + ordinal - Repeated measures library for ordinal data + (by Patrick Lindsey) + . + More information about these libraries is available at + http://popgen.unimaas.nl/~jlindsey/rcode.html --- r-noncran-lindsey-1.0.20071024.orig/debian/copyright +++ r-noncran-lindsey-1.0.20071024/debian/copyright @@ -0,0 +1,19 @@ +The r-nonlinear package combines several R packages downloaded from +http://popgen0146uns50.unimaas.nl/~jlindsey/rcode.html and +http://euridice.tue.nl/~plindsey/rlibs.html. They were first +downloaded and packaged by Chris Lawrence on +20 April 2002. + +debian/rules was adapted from the debian/rules file distributed in +r-recommended, written by Douglas Bates and Dirk Eddelbuettel. + +Upstream Authors: Jim Lindsey + Patrick Lindsey + +Copyright (C) 1998-2007 J.K. Lindsey and P.J. Lindsey. + +All of the R packages are copyrighted by their authors and licensed +under the GNU General Public License, version 2 or later. + +On Debian systems, the full text of the GPL is available in +/usr/share/common-licenses/GPL. --- r-noncran-lindsey-1.0.20071024.orig/debian/r-noncran-lindsey.lintian +++ r-noncran-lindsey-1.0.20071024/debian/r-noncran-lindsey.lintian @@ -0,0 +1,7 @@ +r-noncran-lindsey: extra-license-file usr/lib/R/library/event/COPYING +r-noncran-lindsey: extra-license-file usr/lib/R/library/gnlm/COPYING +r-noncran-lindsey: extra-license-file usr/lib/R/library/growth/COPYING +r-noncran-lindsey: extra-license-file usr/lib/R/library/ordinal/COPYING +r-noncran-lindsey: extra-license-file usr/lib/R/library/repeated/COPYING +r-noncran-lindsey: extra-license-file usr/lib/R/library/rmutil/COPYING +r-noncran-lindsey: extra-license-file usr/lib/R/library/stable/COPYING --- r-noncran-lindsey-1.0.20071024.orig/debian/compat +++ r-noncran-lindsey-1.0.20071024/debian/compat @@ -0,0 +1 @@ +4 --- r-noncran-lindsey-1.0.20071024.orig/debian/dirs +++ r-noncran-lindsey-1.0.20071024/debian/dirs @@ -0,0 +1 @@ +usr/lib/R/site-library --- r-noncran-lindsey-1.0.20071024.orig/debian/patches/50ordinal-cleanups +++ r-noncran-lindsey-1.0.20071024/debian/patches/50ordinal-cleanups @@ -0,0 +1,15 @@ +--- ordinal/src/Makefile 2001-01-25 08:34:50.000000000 -0600 ++++ ordinal-old/src/Makefile 2008-03-05 20:35:01.000000000 -0600 +@@ -2,10 +2,10 @@ + + OBJS = dist.o kord.o lcr.o + +-$(LIBNAME).$(SHLIB_EXT): $(OBJS) ++$(LIBNAME)$(SHLIB_EXT): $(OBJS) + $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) -o $@ $(OBJS) $(ALL_LIBS) + +-all: $(LIBNAME).$(SHLIB_EXT) ++all: $(LIBNAME)$(SHLIB_EXT) + + mostlyclean: clean + clean: