--- rasmol-2.7.2.1.1.orig/src/Imakefile +++ rasmol-2.7.2.1.1/src/Imakefile @@ -103,7 +103,8 @@ # RasMol's on-line help direcory # e.g. /usr/local/lib/rasmol/rasmol.hlp -RASMOLDIR = $(USRLIBDIR)/rasmol/ +#RASMOLDIR = $(USRLIBDIR)/rasmol/ +RASMOLDIR = /usr/share/rasmol/ @@ -136,13 +137,21 @@ # # Architecture Specific Rules # + +#ifdef AMD64Architecture +CCOPTIONS = -D_LONGLONG +#endif + +# # If running under HPUX, define the appropriate variant # with #define # #ifdef HPArchitecture -CCOPTIONS = -Ae -CDEBUGFLAGS = +O2 +Onolimit +#CCOPTIONS = -Ae +# For Debian & gcc +CCOPTIONS = +CDEBUGFLAGS = -O2 #ifdef HPUX_PARISC_32 CCOPTIONS = -Ae +DA2.0 +DS2.0 --- rasmol-2.7.2.1.1.orig/src/molecule.c +++ rasmol-2.7.2.1.1/src/molecule.c @@ -938,9 +938,10 @@ int SimpleAtomType( char *type ) { - char name[4]; + char name[5]; name[2] = name[3] = ' '; + name[4] = '\0'; if( type[1] && (type[1]!=' ') ) { name[0] = ToUpper(type[0]); name[1] = ToUpper(type[1]); --- rasmol-2.7.2.1.1.orig/debian/changelog +++ rasmol-2.7.2.1.1/debian/changelog @@ -0,0 +1,131 @@ +rasmol (2.7.2.1.1-5) unstable; urgency=low + + * Add an icon and a .desktop -file from Ubuntu version, + via Barry deFreese (closes: #377406) + * Fix display bug on amd64 (closes: #397883) + * Update to standards-version 3.7.2 + * Move rasmol-doc to section doc + + -- Teemu Ikonen Mon, 13 Nov 2006 12:57:40 +0100 + +rasmol (2.7.2.1.1-4) unstable; urgency=low + + * Adopt rasmol (closes: #352551) + * Remove Build-Dependency on xlibs-dev, thanks to Justin Pryzby + for the patch and Amaya Rodrigo + Sastre for the NMU (Closes: #347111). + * Fix the mailcap entry, thanks to Dave Love for the + fix (closes: #302377) + * Update Standards-Version to 3.6.2 + * Remove INSTALL.html from rasmol-doc + + -- Teemu Ikonen Mon, 1 May 2006 16:56:18 +0300 + +rasmol (2.7.2.1.1-3.1) unstable; urgency=low + + * Non-maintainer upload. + * Remove Build-Dependency on xlibs-dev (Closes: #347111). + * Credit and Big Thanks to Justin Pryzby + for the patch and testing. + + -- Amaya Rodrigo Sastre Sat, 21 Jan 2006 21:04:09 +0100 + +rasmol (2.7.2.1.1-3) unstable; urgency=low + + * Fix problem when importing XYZ files. Patch from + Stuart Prescott (Closes: #284697) + + -- Randolph Chung Thu, 9 Dec 2004 17:21:34 -0800 + +rasmol (2.7.2.1.1-2) unstable; urgency=medium + + * Fix build problem on hppa (Closes: #283034) + + -- Randolph Chung Sat, 27 Nov 2004 06:20:53 -0800 + +rasmol (2.7.2.1.1-1) unstable; urgency=low + + * New upstream version (Closes: #212566, #190992). + * Complete repackaging, build fixes (Closes: #135403). + * Split documentation to rasmol-doc package. + * Detect 24-bit screens as 32-bit (Closes: #230140). + * Remove bashishm from /usr/bin/rasmol script (Closes: #109518). + * Acknowlegde NMUs: Menu entry is in Science section (Closes: #185724), + xutils and xlibs-dev are in build-depends (Closes: #190512), + install man-page in /usr/share/man (Closes: #91022). + * Work done by Teemu Ikonen + + -- Randolph Chung Mon, 01 Nov 2004 13:49:06 -0800 + +rasmol (2.6b2-6.1) unstable; urgency=low + + * NMU. + * Add Build-Depends on xutils and xlibs-dev. Closes: #190512. + * Move menu entry to Apps/Science. Closes: #185724. + * Use build-stamp file to avoid building all three versions twice. + * Remove /usr/doc/rasmol symlink. + + -- Daniel Schepler Mon, 18 Aug 2003 00:16:12 -0700 + +rasmol (2.6b2-6) unstable; urgency=low + + * Change Imakefile to not assume HPArchitecture == hpux (Closes: #104971) + * Change section from math to science (Closes: #98726) + + -- Randolph Chung Sat, 14 Jul 2001 14:30:58 -0600 + +rasmol (2.6b2-5.1) unstable; urgency=low + + * Non-maintainer upload (QA campaign for FHS transition) + * install man page in /usr/share/man instead of /usr/man (closes: #91022) + + -- Ralf Treinen Fri, 25 May 2001 18:22:59 +0200 + +rasmol (2.6b2-5) unstable; urgency=low + + * don't use egcc. Closes: #85188, #62907 + * update mailcap info. Closes: #63823 + + -- Randolph Chung Sat, 3 Mar 2001 20:26:01 -0700 + +rasmol (2.6b2-4) unstable; urgency=low + + * New maintainer + * /usr/doc -> /usr/share/doc migration + + -- Randolph Chung Sun, 10 Oct 1999 23:42:56 -0700 + +rasmol (2.6b2-3) unstable; urgency=low + + * add to menu system + + -- John Lapeyre Fri, 2 Apr 1999 16:05:22 -0700 + +rasmol (2.6b2-2) unstable; urgency=low + + * use tcsetattr() instead of ioctl(), as per Slootman + to help with non-i386 + + -- John Lapeyre Tue, 8 Dec 1998 23:10:38 -0700 + + +rasmol (2.6b2-1) unstable; urgency=low + + * New upstream source. + + -- John Lapeyre Mon, 24 Aug 1998 18:48:28 -0700 + + +rasmol (2.6b-2) unstable; urgency=low + + * Provide multiple visual depths. + + -- John Lapeyre Wed, 19 Aug 1998 22:35:17 -0700 + +rasmol (2.6b-1) unstable; urgency=low + + * Initial Release. + + -- John Lapeyre Wed, 12 Aug 1998 14:05:52 -0700 + + --- rasmol-2.7.2.1.1.orig/debian/compat +++ rasmol-2.7.2.1.1/debian/compat @@ -0,0 +1 @@ +4 --- rasmol-2.7.2.1.1.orig/debian/control +++ rasmol-2.7.2.1.1/debian/control @@ -0,0 +1,39 @@ +Source: rasmol +Section: science +Priority: optional +Maintainer: Teemu Ikonen +Build-Depends: debhelper (>= 4.0.0), xutils, libx11-dev, libxext-dev, libxi-dev, x-dev +Standards-Version: 3.7.2 + +Package: rasmol +Architecture: any +Section: science +Depends: ${shlibs:Depends}, ${misc:Depends} +Suggests: rasmol-doc +Description: Visualize biological macromolecules + RasMol is a molecular graphics program intended for the visualisation of + proteins, nucleic acids and small molecules. The program is aimed at + display, teaching and generation of publication quality images. + . + The program reads in a molecule coordinate file and interactively displays + the molecule on the screen in a variety of colour schemes and molecule + representations. Currently available representations include depth-cued + wireframes, 'Dreiding' sticks, spacefilling (CPK) spheres, ball and stick, + solid and strand biomolecular ribbons, atom labels and dot surfaces. + . + Supported input file formats include Protein Data Bank (PDB), Tripos + Associates' Alchemy and Sybyl Mol2 formats, Molecular Design Limited's + (MDL) Mol file format, Minnesota Supercomputer Center's (MSC) XYZ (XMol) + format, CHARMm format, CIF format and mmCIF format files. + . + Homepage: http://openrasmol.org + +Package: rasmol-doc +Architecture: all +Section: doc +Enhances: rasmol +Description: Documentation for rasmol + This package contains extra documentation for Rasmol, a program to + visualize biological macromolecules. Included are the Rasmol manual + in various formats, a command reference card and a copy of the + openrasmol website, http://openrasmol.org. --- rasmol-2.7.2.1.1.orig/debian/copyright +++ rasmol-2.7.2.1.1/debian/copyright @@ -0,0 +1,95 @@ +This package was downloaded from ftp://ftp.bernstein-plus-sons.com/software/ + +Copyright: + + RasMol 2.7.2.1 + Molecular Graphics Visualisation Tool + 14 April 2001 + + Based on RasMol 2.6 by Roger Sayle + Biomolecular Structures Group, Glaxo Wellcome Research & Development, + Stevenage, Hertfordshire, UK + Version 2.6, August 1995, Version 2.6.4, December 1998 + Copyright © Roger Sayle 1992-1999 + + and Based on Mods by + Author Version, Date Copyright + Arne Mueller RasMol 2.6x1 May 98 (C) Arne Mueller 1998 + Gary Grossman and RasMol 2.5-ucb Nov 95 (C) UC Regents/ModularCHEM + Marco Molinaro RasMol 2.6-ucb Nov 96 Consortium 1995, 1996 + + Philippe Valadon RasTop 1.3 Aug 00 (C) Philippe Valadon 2000 + + Herbert J. RasMol 2.7.0 Mar 99 (C) Herbert J. Bernstein 1998-2001 + Bernstein RasMol 2.7.1 Jun 99 + RasMol 2.7.1.1 Jan 01 + RasMol 2.7.2 Aug 00 + RasMol 2.7.2.1 Apr 01 + + and Incorporating Translations by + Author Item Language + Isabel Serván Martínez, + José Miguel Fernández Fernández 2.6 Manual Spanish + José Miguel Fernández Fernández 2.7.1 Manual Spanish + Fernando Gabriel Ranea 2.7.1 menus and messages Spanish + Jean-Pierre Demailly 2.7.1 menus and messages French + Giuseppe Martini, Giovanni Paolella, 2.7.1 menus and messages + A. Davassi, M. Masullo, C. Liotto 2.7.1 help file Italian + + This Release by + Herbert J. Bernstein, Bernstein + Sons, P.O. Box 177, Bellport, NY, USA + yaya@bernstein-plus-sons.com + Copyright(C) Herbert J. Bernstein 1998-2001 + +The original RasMol manual was created by Roger Sayle. In July 1996, Dr. +Margaret Wong of the Chemistry Department, Swinburne University of +Technology, Australia, made extensive revisions to the RasMol 2.5 manual to +accurately reflect the operation of RasMol 2.6. Eric Martz of the University +of Massachusetts made further revisions. In May 1997, William McClure of +Carnegie Mellon University reorganized the HTML version of the manual into +multiple sections which could be downloaded quickly and added use of frames. +Portions of the 2.7.1 version of the RasMol manual were derived with +permission from William McClure's version using Roger Sayle's rasmol.doc for +version 2.6.4 as the primary source. Changes were made in August 2000 for +RasMol version 2.7.2, January 2001 for RasMol version 2.7.1.1 and April 2001 +for RasMol version 2.7.2.1. + + Documentation Last Updated 21 April 2000 + Edited by Herbert J. Bernstein and Frances C. Bernstein + +Upstream Author: Herbert J. Bernstein + +License: + + IMPORTANT + +This version is based directly on RasMol version 2.7.2, on RasMol 2.7.1.1, +on RasTop 1.3, on RasMol version 2.6_CIF.2, on RasMol version 2.6x1, on +RasMol version 2.6.4, and RasMol 2.5-ucb and 2.6-ucb. Please read the file +NOTICE for important notices which apply to this package. If you are not +going to make changes to RasMol, you are not only permitted to freely make +copies and distribute them, you are encouraged to do so, provided you do the +following: + + * 1. Either include the complete documentation, especially the file + NOTICE, with what you distribute or provide a clear indication where + people can get a copy of the documentation; and + * 2. Please give credit where credit is due citing the version and + original authors properly; and + * 3. Please do not give anyone the impression that the original authors + are providing a warranty of any kind. + +If you would like to use major pieces of RasMol in some other program, make +modifications to RasMol, or in some other way make what a lawyer would call +a "derived work", you are not only permitted to do so, you are encouraged to +do so. In addition to the things we discussed above, please do the +following: + + * 4. Please explain in your documentation how what you did differs from + this version of RasMol; and + * 5. Please make your modified source code available. + +This version of RasMol is not in the public domain, but it is given freely +to the community in the hopes of advancing science. If you make changes, +please make them in a responsible manner, and please offer us the +opportunity to include those changes in future versions of RasMol. --- rasmol-2.7.2.1.1.orig/debian/rasmol-doc.doc-base.manual +++ rasmol-2.7.2.1.1/debian/rasmol-doc.doc-base.manual @@ -0,0 +1,12 @@ +Document: rasmol-manual +Title: Rasmol Manual +Author: Roger Sayle and others. +Abstract: Manual for Rasmol +Section: Apps/Science + +Format: postscript +Files: /usr/share/doc/rasmol-doc/manualA4.ps.gz + +Format: HTML +Index: /usr/share/doc/rasmol-doc/html/rasmol.html +Files: /usr/share/doc/rasmol-doc/html/*.html --- rasmol-2.7.2.1.1.orig/debian/rasmol-doc.doc-base.refcard +++ rasmol-2.7.2.1.1/debian/rasmol-doc.doc-base.refcard @@ -0,0 +1,8 @@ +Document: rasmol-refcard +Title: Rasmol Quick Reference Card +Author: Roger Sayle and others. +Abstract: Command Reference for Rasmol +Section: Apps/Science + +Format: postscript +Files: /usr/share/doc/rasmol-doc/refcardA4.ps.gz --- rasmol-2.7.2.1.1.orig/debian/rasmol-doc.install +++ rasmol-2.7.2.1.1/debian/rasmol-doc.install @@ -0,0 +1,11 @@ +doc/manualA4.ps.gz usr/share/doc/rasmol-doc +doc/refcardA4.ps.gz usr/share/doc/rasmol-doc +ChangeLog.html usr/share/doc/rasmol-doc +README.html usr/share/doc/rasmol-doc +TODO.html usr/share/doc/rasmol-doc +history.html usr/share/doc/rasmol-doc +doc/rasmol.html usr/share/doc/rasmol-doc/html +doc/NOTICE.html usr/share/doc/rasmol-doc/html +html_graphics/* usr/share/doc/rasmol-doc/html_graphics + + --- rasmol-2.7.2.1.1.orig/debian/rasmol.desktop +++ rasmol-2.7.2.1.1/debian/rasmol.desktop @@ -0,0 +1,13 @@ +[Desktop Entry] +Version=1.0 +Encoding=UTF-8 +Name=RasMol Molecular Graphics Visualization +Name[en_GB]=RasMol Molecular Graphics Visualisation +GenericName=Molecular Graphics Visualization +GenericName[en_GB]=Molecular Graphics Visualisation +Comment=View macro-molecules and prepare publication-quality images of them +Type=Application +Exec=rasmol +Icon=rasmol +Terminal=true +Categories=Application;Education;Science;Biology; --- rasmol-2.7.2.1.1.orig/debian/rasmol.docs +++ rasmol-2.7.2.1.1/debian/rasmol.docs @@ -0,0 +1,3 @@ +NOTICE +README +TODO --- rasmol-2.7.2.1.1.orig/debian/rasmol.menu +++ rasmol-2.7.2.1.1/debian/rasmol.menu @@ -0,0 +1,2 @@ +?package(rasmol):needs="text" section="Apps/Science"\ + title="Rasmol" command="/usr/bin/rasmol" --- rasmol-2.7.2.1.1.orig/debian/rasmol.mime +++ rasmol-2.7.2.1.1/debian/rasmol.mime @@ -0,0 +1 @@ +chemical/x-pdb; /usr/bin/rasmol '%s'; test=/usr/bin/test -n "$DISPLAY" --- rasmol-2.7.2.1.1.orig/debian/rasmol.sh.debian +++ rasmol-2.7.2.1.1/debian/rasmol.sh.debian @@ -0,0 +1,50 @@ +#!/bin/sh +# rasmol.sh +# RasMol Molecular Graphics +# Roger Sayle, August 1995 +# Version 2.6 +# script modified for linux +# John Lapeyre +#Wed, 12 Aug 1998 21:34:40 -0700 +# +# Example Environment Variables +# + +RASMOLPATH=/usr/lib/rasmol +export RASMOLPATH + +RASMOL_VISUAL=8 + +if [ -e /usr/bin/X11/xwininfo ]; then + RASMOL_VISUAL=`xwininfo -root | perl -ne 'chomp;print if s|\s+Depth:\s+||'` ; +fi + +if [ -e "/etc/rasmol/.rasmol.conf" ]; then + . /etc/rasmol/.rasmol.conf; +fi + +if [ -e ~/.rasmol.conf ]; then + . ~/.rasmol.conf; +fi + +case "$1" in + -8) + RASMOL_VISUAL=8 + shift;; + -16) + RASMOL_VISUAL=16 + shift;; + -24) + RASMOL_VISUAL=32 + shift;; + -32) + RASMOL_VISUAL=32 + shift;; +esac +#echo Using binary rasmol.$RASMOL_VISUAL + +if [ $RASMOL_VISUAL = 24 ]; then + RASMOL_VISUAL=32; +fi + +$RASMOLPATH/rasmol.$RASMOL_VISUAL $* --- rasmol-2.7.2.1.1.orig/debian/rasmol.xpm +++ rasmol-2.7.2.1.1/debian/rasmol.xpm @@ -0,0 +1,1219 @@ +/* XPM */ +static char * rasmol_xpm[] = { +"48 48 1168 2", +" c None", +". c #D2D3E2", +"+ c #9B9CB9", +"@ c #8585AD", +"# c #8C8BB8", +"$ c #9593C2", +"% c #9995CA", +"& c #9A97C9", +"* c #A3A2CA", +"= c #B4B5CF", +"- c #9494A9", +"; c #74779D", +"> c #8284B6", +", c #9090CB", +"' c #9B9ADB", +") c #A2A1E1", +"! c #B1AFEB", +"~ c #B6B5EE", +"{ c #B9B9EC", +"] c 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#676745", +"~= c #67673D", +"{= c #696944", +"]= c #666843", +"^= c #656845", +"/= c #66684B", +"(= c #6A6947", +"_= c #696754", +":= c #4D4959", +"<= c #4B466F", +"[= c #595683", +"}= c #666594", +"|= c #7270A4", +"1= c #7E7BB3", +"2= c #8885BE", +"3= c #9591CB", +"4= c #9E98D4", +"5= c #A6A2DE", +"6= c #AAA9E3", +"7= c #B4B5E8", +"8= c #BDBCEF", +"9= c #CBC9F8", +"0= c #CCCDF6", +"a= c #CBCBF5", +"b= c #CBCAFB", +"c= c #C1C2F0", +"d= c #B6B8EA", +"e= c #A2A3E2", +"f= c #9292C3", +"g= c #C8C7CD", +"h= c #4B4962", +"i= c #4A4770", +"j= c #5A5982", +"k= c #68688F", +"l= c #7D7AB3", +"m= c #8682BF", +"n= c #9895CF", +"o= c #A1A0DC", +"p= c #A6A4E2", +"q= c #AFAEE8", +"r= c #B5B5E9", +"s= c #B7B8EB", +"t= c #BFBEF6", +"u= c #BFBCED", +"v= c #B0AEC5", +"w= c #6B6B62", +"x= c #65674F", +"y= c #636358", +"z= c #646352", +"A= c #636443", +"B= c #66654D", +"C= c #646445", +"D= c #636454", +"E= c #4E4F59", +"F= c #494B6B", +"G= c #52537C", +"H= c #66658E", +"I= c #6E6D9C", +"J= c #7976AA", +"K= 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+"d- c #7774A8", +"e- c #817EB5", +"f- c #8785BD", +"g- c #8E8DC6", +"h- c #9391CE", +"i- c #9B99D6", +"j- c #A0A4DA", +"k- c #9EA3DB", +"l- c #9EA0DE", +"m- c #9F9FE0", +"n- c #908FC9", +"o- c #8484AE", +"p- c #464560", +"q- c #4A496E", +"r- c #54537D", +"s- c #63618E", +"t- c #7371A4", +"u- c #8584BD", +"v- c #8A89C2", +"w- c #9392CB", +"x- c #9897D0", +"y- c #9D98D5", +"z- c #A09CDA", +"A- c #9FA1DD", +"B- c #A1A3DF", +"C- c #9E9EDB", +"D- c #9A9CD7", +"E- c #9394D0", +"F- c #8887BC", +"G- c #8F8EAC", +"H- c #4B4A64", +"I- c #484969", +"J- c #4D4D71", +"K- c #5F5E8A", +"L- c #6B6A96", +"M- c #6E6D9B", +"N- c #7F7DB4", +"O- c #8382B9", +"P- c #8685C0", +"Q- c #9291CF", +"R- c #9594CF", +"S- c #9899D6", +"T- c #989AD6", +"U- c #9496CE", +"V- c #9396CD", +"W- c #8C8EC6", +"X- c #8685BF", +"Y- c #49466A", +"Z- c #4D4D73", +"`- c #58577D", +" ; c #66668E", +".; c #6D6B9A", +"+; c #7675A9", +"@; c #7878AE", +"#; c #8383B9", +"$; c #8787BD", +"%; c #8D8DC3", +"&; c #948FC9", +"*; c 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+"6> c #68668F", +"7> c #4E4C5F", +"8> c #4A4861", +"9> c #4A4764", +"0> c #4A486B", +"a> c #524F77", +"b> c #5B577F", +"c> c #545274", +"d> c #565575", +"e> c #5E5C79", +"f> c #44455D", +"g> c #474765", +"h> c #484768", +"i> c #4E4D71", +"j> c #4E4C74", +"k> c #55527D", +"l> c #55537A", +"m> c #5A587C", +"n> c #807F8D", +"o> c #514F63", +"p> c #49495F", +"q> c #4A4A63", +"r> c #48455F", +"s> c #4E4964", +"t> c #5E5D71", +"u> c #9B9DA7", +"v> c #48465E", +"w> c #48465D", +"x> c #4B4961", +"y> c #4F4C67", +" ", +" . + @ # $ % & * = ", +" - ; > , ' ) ! ~ { ] ^ ", +" / ( _ : < [ } | 1 2 3 4 5 ", +" 6 7 8 9 0 a b c d e f g h i j ", +" k l m n o p q r s t u v w x y z A ", +" B C D E F G H q I J K L M N O P Q R S ", +" T U D V W X H Y Z ` ...+.@.#.$.%.&.*. ", +" =.-.;.>.,.G '.).!.~.{.].^./.(._.:.<.[.}. ", +" |.1.2.3.4.5.6.'.7.8.9.0.a.b.c.#.d.e.f.g.h. ", +" i.j.k.l.m.n.o.p.q.r.s.t.u.v.w.x.y.z.A.B.C. ", +" D.E.F.G.H.I.J.K.L.M.N.O.P.Q.R.S.T.U.V.W.X. ", +" Y.E.Z.`. +.+++@+#+$+%+&+*+=+-+;+>+,+'+)+!+ ", +" ~+{+]+^+/+(+_+:+<+[+}+|+1+2+3+4+5+6+7+8+9+ ", +" 0+a+b+c+d+e+f+g+h+i+j+k+l+m+n+o+p+q+r+s+t+ ", +" u+v+w+x+y+z+A+B+C+D+9+E+F+G+H+I+J+K+L+M+N+ ", +" O+P+Q+R+S+T+U+V+W+X+Y+Z+`+ @.@+@@@#@$@ ", +" %@&@*@=@-@;@>@,@'@)@!@~@{@]@^@/@(@_@ ", +" :@<@[@}@|@1@2@3@4@5@6@7@8@9@0@a@b@c@ ", +" d@e@f@g@h@i@j@k@l@m@n@o@p@q@r@s@ ", +" t@u@v@w@x@y@z@A@B@C@D@E@F@G@H@ ", +" I@J@K@L@M@N@O@P@Q@R@S@T@U@V@W@X@ ", +" Y@Z@`@ #.#+#@###$#%#&#*#=#-#;#>#,# ", +" '#)#!#~#{#]#^#/#(#_#:#<#[#}#|#1#2#3# ", +" 4#5#6#7#8#9#0#a#b#c#d# e#f#g#h#i#j#k#l#m#n#o# ", +" p#q#r#s#t#u#v#w#x#y#z#A#B#C# D#E#F#G#H#I#J#K#L#M#N#O#P#Q# ", +" R#S#T#U#V#W#X#Y#Z#`# $.$+$@$ #$$$%$&$*$=$-$;$>$,$'$)$!$~$ ", +" {$]$^$/$($_$:$<$[$}$|$1$2$3$4$ 5$6$7$8$9$0$a$b$c$0.d$e$f$g$h$ ", +" i$j$k$l$m$n$o$p$q$ .r$s$t$u$v$w$x$ y$z$A$B$C$D$E$F$G$H$I$J$K$L$M$N$O$ ", +" P$Q$R$S$T$U$V$W$X$Y$Z$`$ %.%+%@%#%$%%% &%*%=%-%;%>%,%'%)%!%~%{%]%^%/%(%_%:% ", +" <%[%}%|%1%2%3%4%5%6%7%8%9%0%a%b%c%d%e% f%g%h%i%j%k%l%m%n%o%p%q%r%s%t%u%v%w%x% ", +" y%z%A%B%C%D%E%F%G%H%I%J%K%L%M%N%O%P%Q%R% S%T%U%V%W%X%Y%Z%`% &.&+&@&#&$&%&&&*&=&-&;& ", +" >&,&'&)&!&~&{&]&^&/&(&_&:&<&$&[&}&|&1&2&3& 4&5&6&7&8&9&0&a&b&c&d&e&f&g&M%h&i&j&k&l&m& ", +" n&R+o&p&q&r&s&t&u&v&w&x&y&z&A&B&C&D&E&F&G&H&I&J&K&L&M&N&O&P&Q&R&S&T&U&V&W&X&x.Y&Z&`& *.*+*@* ", +"#*$*%*&***=*-*;*>*,*'*)*!*~*{*]*y ^*/*(*_*:*<*[*}*|*1*2*3*4*5*6*7*8*9*0*a*b*c*p%7%d*e*~*f*g*h* ", +"i*j*k*l*m*n*o*p*q*r*s*t*u*v*w*x*y*z*A*B*C*D*E*F*G*H*I*J*K*L*M*N*O*P*Q*R*S*T*U*e$V*W*X*Y*Z*`* = ", +".=j*+=@=#=$=%=~@&=*===} -=;=>=,='=)=!=~={=]=^=/=(=_=:=<=[=}=|=1=2=3=4=5=6=7=8=9=0=a=b=c=d=e=f= ", +"g=h=i=j=k=n@l=m=]@n=o=p=q=r=s=t=u=v=w=x=y=z=A=B=C=D=E=F=G=H=I=J=K=L=M=N=O=6=P=Q=R=S=T=U=V=W=X= ", +" Y=Z=`= -D@.-+-@-#-$-%-&-*-=---;->-,-'-)- !-~-{-]-D@^-/-(-_-:-<-[-}-|-1-2-3-4-5-6-7- ", +" 8-9-0-a-b-c-d-e-f-g-h-i-<-j-k-l-m-' n-o- p-q-r-s-c-t-6@u-v-w-x-y-z-A-B-C-D-E-F-G- ", +" H-I-J-K-L-M-c@N-O-P-Q-R-S-T-U-V-W-X- h=Y-Z-`- ;.;+;@;#;$;%;&;*;=;-;;;>;,;';); ", +" !;~;{;];^;/;(;_;:;<;[;};|;$;C+1; 2;3;4;5;H=L*6;7;8;9;0;a;b;c;d;e;f;g; ", +" h;i;j;k;l;m;n;o;M*p;q;q;r;s;t;u; v;w;x;y;z;A;B;C;D;E;F;G;H;I;J;K;L; ", +" v+M;N;O;P;[%Q;R;S;T;U;H.V;W; X;Y;Z;`; >.>+>@>#>$>%>&>*>=>-> ", +" ;>>>,>'>)>!>~>H={>]>^>/>(> _>:><>[>}>|>1>2>3>4>5>6> ", +" 7>8>9>0>+=`=a>b>c>d>e> f>g>h>i>j>k>l>m> ", +" n>o>p>f>q>r>s>t>u> v>w>x>v>y> ", +" "}; --- rasmol-2.7.2.1.1.orig/debian/rules +++ rasmol-2.7.2.1.1/debian/rules @@ -0,0 +1,143 @@ +#!/usr/bin/make -f + +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + +# This has to be exported to make some magic below work. +export DH_OPTIONS + +CFLAGS = -Wall -g +SRC = src +DOC = doc + +ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS))) + CFLAGS += -O0 +else + CFLAGS += -O2 +endif + +configure: configure-stamp +configure-stamp: + dh_testdir + # Add here commands to configure the package. + (cd src; xmkmf) + touch configure-stamp + +#Architecture +build: build-arch build-indep + +build-arch: build-arch-stamp +build-arch-stamp: configure-stamp + # Add here commands to compile the arch part of the package. + dh_testdir + + $(MAKE) -C $(SRC) DEPTHDEF=-DEIGHTBIT=1 rasmol + mv $(SRC)/rasmol $(SRC)/rasmol.8 + + $(MAKE) -C $(SRC) clean; + $(MAKE) -C $(SRC) DEPTHDEF=-DSIXTEENBIT=1 rasmol + mv $(SRC)/rasmol $(SRC)/rasmol.16 + + $(MAKE) -C $(SRC) clean; + $(MAKE) -C $(SRC) DEPTHDEF=-DTHIRTYTWOBIT=1 rasmol + mv $(SRC)/rasmol $(SRC)/rasmol.32 + + touch build-arch-stamp + +build-indep: build-indep-stamp +build-indep-stamp: configure-stamp + + # Add here commands to compile the indep part of the package. + + touch build-indep-stamp + +clean: + dh_testdir + dh_testroot + rm -f build-arch-stamp build-indep-stamp configure-stamp + + # Add here commands to clean up after the build process. + -$(MAKE) -C $(SRC) clean + -rm -f $(SRC)/rasmol.32 $(SRC)/rasmol.16 $(SRC)/rasmol.8 + -rm -f $(SRC)/Makefile + dh_clean --exclude ./src/mswin31.c.orig + +install: install-indep install-arch +install-indep: + dh_testdir + dh_testroot + dh_clean -k -i --exclude ./src/mswin31.c.orig + dh_installdirs -i + + # Add here commands to install the indep part of the package into + # debian/-doc. + #INSTALLDOC# + + dh_install -i + + +install-arch: + dh_testdir + dh_testroot + dh_clean -k --exclude ./src/mswin31.c.orig + dh_installdirs -s + + # Add here commands to install the arch part of the package into + # debian/tmp. + install -d $(CURDIR)/debian/rasmol/usr/bin + install -d $(CURDIR)/debian/rasmol/usr/share/man/man1 + install -d $(CURDIR)/debian/rasmol/usr/share/rasmol + install -d $(CURDIR)/debian/rasmol/usr/lib/rasmol + install -d $(CURDIR)/debian/rasmol/usr/share/applications + install -d $(CURDIR)/debian/rasmol/usr/share/pixmaps + + + strip --strip-unneeded $(SRC)/rasmol.32 $(SRC)/rasmol.16 \ + $(SRC)/rasmol.8 + install -m 755 $(SRC)/rasmol.32 $(SRC)/rasmol.16 \ + $(SRC)/rasmol.8 $(CURDIR)/debian/rasmol/usr/lib/rasmol + install -m 755 debian/rasmol.sh.debian \ + $(CURDIR)/debian/rasmol/usr/bin/rasmol + install -m 644 $(DOC)/rasmol.1 \ + $(CURDIR)/debian/rasmol/usr/share/man/man1 + install -m 644 $(DOC)/rasmol.hlp \ + $(CURDIR)/debian/rasmol/usr/share/rasmol + install -m 644 debian/rasmol.desktop \ + $(CURDIR)/debian/rasmol/usr/share/applications + install -m 644 debian/rasmol.xpm \ + $(CURDIR)/debian/rasmol/usr/share/pixmaps + + +# Must not depend on anything. This is to be called by +# binary-arch/binary-indep +# in another 'make' thread. +binary-common: + dh_testdir + dh_testroot + dh_installchangelogs -k ChangeLog.html + dh_installdocs + dh_installexamples + dh_installmenu + dh_installmime + dh_installman + dh_link + dh_strip + dh_compress + dh_fixperms + dh_makeshlibs + dh_installdeb + dh_shlibdeps + dh_gencontrol + dh_md5sums + dh_builddeb + +# Build architecture independant packages using the common target. +binary-indep: build-indep install-indep + $(MAKE) -f debian/rules DH_OPTIONS=-i binary-common + +# Build architecture dependant packages using the common target. +binary-arch: build-arch install-arch + $(MAKE) -f debian/rules DH_OPTIONS=-a binary-common + +binary: binary-arch binary-indep +.PHONY: build clean binary-indep binary-arch binary install install-indep install-arch configure --- rasmol-2.7.2.1.1.orig/debian/watch +++ rasmol-2.7.2.1.1/debian/watch @@ -0,0 +1,6 @@ +# Example watch control file for uscan +# Rename this file to "watch" and then you can run the "uscan" command +# to check for upstream updates and more. +# Site Directory Pattern Version Script +version=2 +ftp://ftp.bernstein-plus-sons.com/software/RasMol_(.*)\.tar\.gz debian uupdate