--- ssm-1.1.orig/debian/watch +++ ssm-1.1/debian/watch @@ -0,0 +1,2 @@ +version=3 +ftp://ftp.bioxray.au.dk/pub/mok/src/ssm-(.*)\.tar\.gz debian uupdate --- ssm-1.1.orig/debian/changelog +++ ssm-1.1/debian/changelog @@ -0,0 +1,26 @@ +ssm (1.1-0ubuntu1) natty; urgency=low + + * New upstream version. + + -- Morten Kjeldgaard Fri, 17 Dec 2010 17:36:53 +0100 + +ssm (1.0-0ubuntu2) maverick; urgency=low + + * Add libssm0.symbols file for fine-grained dependency checking. + * debian/control: packaging moved to launchpad bzr branch, added + Vcs-Bzr: line, and update homepage field. + + -- Morten Kjeldgaard Tue, 10 Aug 2010 12:58:39 +0200 + +ssm (1.0-0ubuntu1) jaunty; urgency=low + + * New upstream release + * Bump Standards-Version to 3.8.0 (no changes) + + -- Nathan Handler Sat, 14 Feb 2009 01:47:48 +0000 + +ssm (0.1-0ubuntu1) hardy; urgency=low + + * Initial packaging (LP: #176219) + + -- Morten Kjeldgaard Tue, 15 Jan 2008 01:01:19 +0100 --- ssm-1.1.orig/debian/libssm0.install +++ ssm-1.1/debian/libssm0.install @@ -0,0 +1 @@ +debian/tmp/usr/lib/libssm.so.* --- ssm-1.1.orig/debian/libssm-dev.install +++ ssm-1.1/debian/libssm-dev.install @@ -0,0 +1,4 @@ +debian/tmp/usr/include/ssm/ +debian/tmp/usr/lib/libssm.a +debian/tmp/usr/lib/libssm.so +debian/tmp/usr/lib/pkgconfig/ssm.pc --- ssm-1.1.orig/debian/compat +++ ssm-1.1/debian/compat @@ -0,0 +1 @@ +5 --- ssm-1.1.orig/debian/control +++ ssm-1.1/debian/control @@ -0,0 +1,52 @@ +Source: ssm +Priority: optional +Section: science +Maintainer: Morten Kjeldgaard +Homepage: https://launchpad.net/ssm/ +Vcs-Bzr: http://bazaar.launchpad.net/~mok0/ssm/ubuntu +Build-Depends: debhelper (>= 5), cdbs, libmmdb-dev (>= 1.23), libgpp4-dev +Standards-Version: 3.9.1 + +Package: libssm-dev +Section: libdevel +Architecture: any +Depends: libssm0 (= ${binary:Version}), libmmdb-dev, ${misc:Depends} +Description: macromolecular superposition library + SSM is a macromolecular coordinate superposition library, written by + Eugene Krissinel of the EBI. + . + The library implements the SSM algorithm of protein structure + comparison in three dimensions, which includes an original procedure + of matching graphs built on the protein's secondary-structure + elements, followed by an iterative three-dimensional alignment of + protein backbone Calpha atoms. + . + The algorithm implemented by the software is described in: + E. Krissinel & K. Henrick (2004) Secondary-structure matching (SSM), a + new tool for fast protein structure alignment in three dimensions. + Acta Crystallogr D Biol Crystallogr. 60, 2256-68. + . + This package contains libraries and header files needed for program + development. + +Package: libssm0 +Section: libs +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: macromolecular superposition library + SSM is a macromolecular coordinate superposition library, written by + Eugene Krissinel of the EBI. + . + The library implements the SSM algorithm of protein structure + comparison in three dimensions, which includes an original procedure + of matching graphs built on the protein's secondary-structure + elements, followed by an iterative three-dimensional alignment of + protein backbone Calpha atoms. + . + The algorithm implemented by the software is described in: + E. Krissinel & K. Henrick (2004) Secondary-structure matching (SSM), a + new tool for fast protein structure alignment in three dimensions. + Acta Crystallogr D Biol Crystallogr. 60, 2256-68. + . + This package contains the shared library components needed for programs + that have been compiled with the ssm library. --- ssm-1.1.orig/debian/libssm0.symbols +++ ssm-1.1/debian/libssm0.symbols @@ -0,0 +1,333 @@ +libssm.so.0 libssm0 #MINVER# + CheckSSConnectivity@Base 0.1 + _Z10CompareIntiiPc@Base 0.1 + _Z10CompareStrPcS_S_@Base 0.1 + _Z10StreamReadR5CFileRP13CSSGraphMatch@Base 0.1 + _Z10StreamReadR5CFileRP7CSSEdge@Base 0.1 + _Z10StreamReadR5CFileRP8CSSGraph@Base 0.1 + _Z10StreamReadR5CFileRP8CSSMatch@Base 0.1 + _Z10StreamReadR5CFileRP9CSSMAlign@Base 0.1 + _Z10StreamReadR5CFileRP9CSSVertex@Base 0.1 + _Z11CompareRealddPc@Base 0.1 + _Z11InitSSGraphv@Base 0.1 + _Z11StreamWriteR5CFileRP13CSSGraphMatch@Base 0.1 + _Z11StreamWriteR5CFileRP7CSSEdge@Base 0.1 + _Z11StreamWriteR5CFileRP8CSSGraph@Base 0.1 + 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vv_uncert_min@Base 0.1 --- ssm-1.1.orig/debian/copyright +++ ssm-1.1/debian/copyright @@ -0,0 +1,30 @@ +X-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat +X-Debianized-By: Morten Kjeldgaard +X-Debinized-Date: Sun, 20 May 2007 09:54:49 +0000. +X-Source-Downloaded-From: ftp://ftp.bioxray.au.dk/pub/mok/src/ssm-0.1.tar.gz +X-Upstream-Author: Eugene Krissinel, Morten Kjeldgaard + +Files: src/* +Copyright: (C) 2004-2006 Eugene Krissinel +License: LGPL-2.1+ + This package is free software; you can redistribute it and/or + modify it under the terms of the GNU Lesser General Public + License as published by the Free Software Foundation; either + version 2 of the License, or (at your option) any later version. + . + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + Lesser General Public License for more details. + . + You should have received a copy of the GNU Lesser General Public + License along with this package; if not, write to the Free Software + Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA + +Files: debian/* +Copyright: (C) 2007-2008, Morten Kjeldgaard +License: LGPL-2.1+ + +X-Comment: On Debian systems, the complete text of the GNU Lesser + General Public License version 2.1 can be found in the file + `/usr/share/common-licenses/LGPL-2.1'. --- ssm-1.1.orig/debian/rules +++ ssm-1.1/debian/rules @@ -0,0 +1,10 @@ +#!/usr/bin/make -f + +include /usr/share/cdbs/1/rules/debhelper.mk +include /usr/share/cdbs/1/class/autotools.mk + +CXXFLAGS += -D_REENTRANT + +# cdbs silently drops upstream changelog from all packages: +DEB_INSTALL_CHANGELOGS_ALL = ChangeLog +