RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 3.2.0-35-generic #55-Ubuntu SMP Wed Dec 5 17:42:16 UTC 2012 x86_64 Buildd toolchain package versions: launchpad-buildd_114-0~53~0.IS.08.04 python-lpbuildd_114-0~53~0.IS.08.04 bzr_2.5.1-0ubuntu2. Syncing the system clock with the buildd NTP service... 4 Jan 02:44:03 ntpdate[27468]: adjust time server 10.211.37.1 offset 0.000016 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '32593683fd63c9e9ad3ca732d20591ceb4715a39', '/home/buildd/filecache-default/e41b1ce16da159ed8193bb6523948931594818ac'] Unpacking chroot for build 32593683fd63c9e9ad3ca732d20591ceb4715a39 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '32593683fd63c9e9ad3ca732d20591ceb4715a39'] Mounting chroot for build 32593683fd63c9e9ad3ca732d20591ceb4715a39 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '32593683fd63c9e9ad3ca732d20591ceb4715a39', 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu raring main', 'deb http://ftpmaster.internal/ubuntu raring main restricted universe multiverse'] Overriding sources.list in build-32593683fd63c9e9ad3ca732d20591ceb4715a39 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '32593683fd63c9e9ad3ca732d20591ceb4715a39', 'amd64'] Updating debian chroot for build 32593683fd63c9e9ad3ca732d20591ceb4715a39 Ign http://ppa.launchpad.net raring InRelease Ign http://archive-team.internal raring InRelease Ign http://ftpmaster.internal raring InRelease Get:1 http://ppa.launchpad.net raring Release.gpg [316 B] Ign http://archive-team.internal raring Release.gpg Get:2 http://ftpmaster.internal raring Release.gpg [933 B] Get:3 http://ppa.launchpad.net raring Release [9756 B] Get:4 http://ftpmaster.internal raring Release [40.8 kB] Get:5 http://archive-team.internal raring Release [730 B] Ign http://ppa.launchpad.net raring Release Get:6 http://ppa.launchpad.net raring/main amd64 Packages [15.3 kB] Get:7 http://ftpmaster.internal raring/main amd64 Packages [1156 kB] Ign http://ppa.launchpad.net raring/main Translation-en Get:8 http://archive-team.internal raring/main amd64 Packages Ign http://archive-team.internal raring/main Translation-en Get:9 http://ftpmaster.internal raring/restricted amd64 Packages [8575 B] Get:10 http://ftpmaster.internal raring/universe amd64 Packages [5396 kB] Get:11 http://ftpmaster.internal raring/multiverse amd64 Packages [130 kB] Get:12 http://ftpmaster.internal raring/main Translation-en [667 kB] Get:13 http://ftpmaster.internal raring/multiverse Translation-en [99.6 kB] Get:14 http://ftpmaster.internal raring/restricted Translation-en [2588 B] Get:15 http://ftpmaster.internal raring/universe Translation-en [3727 kB] Fetched 11.3 MB in 3s (3108 kB/s) Reading package lists... W: GPG error: http://ppa.launchpad.net raring Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 1E9377A2BA9EF27F Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: cpp-4.8 g++-4.8 gcc-4.8 gcc-4.8-base libasan0 libatomic1 libcloog-isl3 libgcc-4.8-dev libisl10 libsemanage-common libsemanage1 libsepol1 libstdc++-4.8-dev libtsan0 libustr-1.0-1 The following packages will be upgraded: cpp e2fslibs e2fsprogs g++ gcc libcomerr2 libgcc1 libgomp1 libitm1 liblzma5 libpam-modules libpam-modules-bin libpam-runtime libpam0g libquadmath0 libsqlite3-0 libss2 libstdc++6 login passwd patch xz-utils 22 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. Need to get 28.7 MB of archives. After this operation, 65.2 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! e2fslibs e2fsprogs login gcc-4.8-base libgcc1 libstdc++6 libcomerr2 liblzma5 libpam0g libpam-modules-bin libpam-modules libss2 libsemanage-common libsepol1 libustr-1.0-1 libsemanage1 libsqlite3-0 libasan0 libatomic1 libisl10 libcloog-isl3 libgomp1 libitm1 libquadmath0 libtsan0 libpam-runtime passwd cpp-4.8 cpp libgcc-4.8-dev gcc-4.8 gcc libstdc++-4.8-dev g++-4.8 g++ patch xz-utils Authentication warning overridden. Get:1 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu/ raring/main gcc-4.8-base amd64 4.8-20130102-1ubuntu1 [16.5 kB] Get:2 http://ftpmaster.internal/ubuntu/ raring/main e2fslibs amd64 1.42.5-1ubuntu4 [196 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu/ raring/main libgcc1 amd64 1:4.8-20130102-1ubuntu1 [43.4 kB] Get:4 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu/ raring/main libstdc++6 amd64 4.8-20130102-1ubuntu1 [326 kB] Get:5 http://ftpmaster.internal/ubuntu/ raring/main e2fsprogs amd64 1.42.5-1ubuntu4 [980 kB] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu/ raring/main libasan0 amd64 4.8-20130102-1ubuntu1 [57.8 kB] Get:7 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu/ raring/main libatomic1 amd64 4.8-20130102-1ubuntu1 [10.3 kB] Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu/ raring/main libgomp1 amd64 4.8-20130102-1ubuntu1 [27.1 kB] Get:9 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu/ raring/main libitm1 amd64 4.8-20130102-1ubuntu1 [37.5 kB] Get:10 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu/ raring/main libquadmath0 amd64 4.8-20130102-1ubuntu1 [139 kB] Get:11 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu/ raring/main libtsan0 amd64 4.8-20130102-1ubuntu1 [91.4 kB] Get:12 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu/ raring/main cpp-4.8 amd64 4.8-20130102-1ubuntu1 [5776 kB] Get:13 http://ftpmaster.internal/ubuntu/ raring/main login amd64 1:4.1.5.1-1ubuntu2 [326 kB] Get:14 http://ftpmaster.internal/ubuntu/ raring/main libcomerr2 amd64 1.42.5-1ubuntu4 [60.3 kB] Get:15 http://ftpmaster.internal/ubuntu/ raring/main liblzma5 amd64 5.1.1alpha+20120614-2ubuntu1 [89.2 kB] Get:16 http://ftpmaster.internal/ubuntu/ raring/main libpam0g amd64 1.1.3-7ubuntu4 [61.8 kB] Get:17 http://ftpmaster.internal/ubuntu/ raring/main libpam-modules-bin amd64 1.1.3-7ubuntu4 [40.5 kB] Get:18 http://ftpmaster.internal/ubuntu/ raring/main libpam-modules amd64 1.1.3-7ubuntu4 [279 kB] Get:19 http://ftpmaster.internal/ubuntu/ raring/main libss2 amd64 1.42.5-1ubuntu4 [65.5 kB] Get:20 http://ftpmaster.internal/ubuntu/ raring/main libsemanage-common all 2.1.6-6 [6106 B] Get:21 http://ftpmaster.internal/ubuntu/ raring/main libsepol1 amd64 2.1.4-3ubuntu2 [121 kB] Get:22 http://ftpmaster.internal/ubuntu/ raring/main libustr-1.0-1 amd64 1.0.4-3 [79.3 kB] Get:23 http://ftpmaster.internal/ubuntu/ raring/main libsemanage1 amd64 2.1.6-6 [83.7 kB] Get:24 http://ftpmaster.internal/ubuntu/ raring/main libsqlite3-0 amd64 3.7.15.1-1 [369 kB] Get:25 http://ftpmaster.internal/ubuntu/ raring/universe libisl10 amd64 0.10-3 [410 kB] Get:26 http://ftpmaster.internal/ubuntu/ raring/universe libcloog-isl3 amd64 0.17.0-3 [63.2 kB] Get:27 http://ftpmaster.internal/ubuntu/ raring/main libpam-runtime all 1.1.3-7ubuntu4 [40.9 kB] Get:28 http://ftpmaster.internal/ubuntu/ raring/main passwd amd64 1:4.1.5.1-1ubuntu2 [1071 kB] Get:29 http://ftpmaster.internal/ubuntu/ raring/main patch amd64 2.6.1-3ubuntu2 [79.9 kB] Get:30 http://ftpmaster.internal/ubuntu/ raring/main xz-utils amd64 5.1.1alpha+20120614-2ubuntu1 [87.3 kB] Get:31 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu/ raring/main cpp amd64 4:4.8-0ubuntu10 [27.9 kB] Get:32 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu/ raring/main libgcc-4.8-dev amd64 4.8-20130102-1ubuntu1 [2726 kB] Get:33 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu/ raring/main gcc-4.8 amd64 4.8-20130102-1ubuntu1 [6866 kB] Get:34 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu/ raring/main gcc amd64 4:4.8-0ubuntu10 [5140 B] Get:35 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu/ raring/main libstdc++-4.8-dev amd64 4.8-20130102-1ubuntu1 [1754 kB] Get:36 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu/ raring/main g++-4.8 amd64 4.8-20130102-1ubuntu1 [6266 kB] Get:37 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu/ raring/main g++ amd64 4:4.8-0ubuntu10 [1440 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 28.7 MB in 0s (32.9 MB/s) (Reading database ... 12246 files and directories currently installed.) Preparing to replace e2fslibs:amd64 1.42.5-1ubuntu3 (using .../e2fslibs_1.42.5-1ubuntu4_amd64.deb) ... Unpacking replacement e2fslibs:amd64 ... Setting up e2fslibs:amd64 (1.42.5-1ubuntu4) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12246 files and directories currently installed.) Preparing to replace e2fsprogs 1.42.5-1ubuntu3 (using .../e2fsprogs_1.42.5-1ubuntu4_amd64.deb) ... Unpacking replacement e2fsprogs ... Setting up e2fsprogs (1.42.5-1ubuntu4) ... (Reading database ... 12246 files and directories currently installed.) Preparing to replace login 1:4.1.4.2+svn3283-3ubuntu7 (using .../login_1%3a4.1.5.1-1ubuntu2_amd64.deb) ... Unpacking replacement login ... Setting up login (1:4.1.5.1-1ubuntu2) ... Installing new version of config file /etc/securetty ... Installing new version of config file /etc/pam.d/login ... Selecting previously unselected package gcc-4.8-base:amd64. (Reading database ... 12262 files and directories currently installed.) Unpacking gcc-4.8-base:amd64 (from .../gcc-4.8-base_4.8-20130102-1ubuntu1_amd64.deb) ... Setting up gcc-4.8-base:amd64 (4.8-20130102-1ubuntu1) ... (Reading database ... 12269 files and directories currently installed.) Preparing to replace libgcc1:amd64 1:4.7.2-16ubuntu1 (using .../libgcc1_1%3a4.8-20130102-1ubuntu1_amd64.deb) ... Unpacking replacement libgcc1:amd64 ... Setting up libgcc1:amd64 (1:4.8-20130102-1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12269 files and directories currently installed.) Preparing to replace libstdc++6:amd64 4.7.2-16ubuntu1 (using .../libstdc++6_4.8-20130102-1ubuntu1_amd64.deb) ... Unpacking replacement libstdc++6:amd64 ... Setting up libstdc++6:amd64 (4.8-20130102-1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12269 files and directories currently installed.) Preparing to replace libcomerr2:amd64 1.42.5-1ubuntu3 (using .../libcomerr2_1.42.5-1ubuntu4_amd64.deb) ... Unpacking replacement libcomerr2:amd64 ... Setting up libcomerr2:amd64 (1.42.5-1ubuntu4) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12269 files and directories currently installed.) Preparing to replace liblzma5:amd64 5.1.1alpha+20120614-2 (using .../liblzma5_5.1.1alpha+20120614-2ubuntu1_amd64.deb) ... Unpacking replacement liblzma5:amd64 ... Setting up liblzma5:amd64 (5.1.1alpha+20120614-2ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12269 files and directories currently installed.) Preparing to replace libpam0g:amd64 1.1.3-7ubuntu3 (using .../libpam0g_1.1.3-7ubuntu4_amd64.deb) ... Unpacking replacement libpam0g:amd64 ... Setting up libpam0g:amd64 (1.1.3-7ubuntu4) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12269 files and directories currently installed.) Preparing to replace libpam-modules-bin 1.1.3-7ubuntu3 (using .../libpam-modules-bin_1.1.3-7ubuntu4_amd64.deb) ... Unpacking replacement libpam-modules-bin ... Setting up libpam-modules-bin (1.1.3-7ubuntu4) ... (Reading database ... 12269 files and directories currently installed.) Preparing to replace libpam-modules:amd64 1.1.3-7ubuntu3 (using .../libpam-modules_1.1.3-7ubuntu4_amd64.deb) ... Unpacking replacement libpam-modules:amd64 ... Setting up libpam-modules:amd64 (1.1.3-7ubuntu4) ... (Reading database ... 12269 files and directories currently installed.) Preparing to replace libss2:amd64 1.42.5-1ubuntu3 (using .../libss2_1.42.5-1ubuntu4_amd64.deb) ... Unpacking replacement libss2:amd64 ... Setting up libss2:amd64 (1.42.5-1ubuntu4) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Selecting previously unselected package libsemanage-common. (Reading database ... 12269 files and directories currently installed.) Unpacking libsemanage-common (from .../libsemanage-common_2.1.6-6_all.deb) ... Setting up libsemanage-common (2.1.6-6) ... Selecting previously unselected package libsepol1:amd64. (Reading database ... 12275 files and directories currently installed.) Unpacking libsepol1:amd64 (from .../libsepol1_2.1.4-3ubuntu2_amd64.deb) ... Setting up libsepol1:amd64 (2.1.4-3ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Selecting previously unselected package libustr-1.0-1:amd64. (Reading database ... 12279 files and directories currently installed.) Unpacking libustr-1.0-1:amd64 (from .../libustr-1.0-1_1.0.4-3_amd64.deb) ... Setting up libustr-1.0-1:amd64 (1.0.4-3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Selecting previously unselected package libsemanage1:amd64. (Reading database ... 12289 files and directories currently installed.) Unpacking libsemanage1:amd64 (from .../libsemanage1_2.1.6-6_amd64.deb) ... Setting up libsemanage1:amd64 (2.1.6-6) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12293 files and directories currently installed.) Preparing to replace libsqlite3-0:amd64 3.7.15-1 (using .../libsqlite3-0_3.7.15.1-1_amd64.deb) ... Unpacking replacement libsqlite3-0:amd64 ... Selecting previously unselected package libasan0:amd64. Unpacking libasan0:amd64 (from .../libasan0_4.8-20130102-1ubuntu1_amd64.deb) ... Selecting previously unselected package libatomic1:amd64. Unpacking libatomic1:amd64 (from .../libatomic1_4.8-20130102-1ubuntu1_amd64.deb) ... Selecting previously unselected package libisl10:amd64. Unpacking libisl10:amd64 (from .../libisl10_0.10-3_amd64.deb) ... Selecting previously unselected package libcloog-isl3:amd64. Unpacking libcloog-isl3:amd64 (from .../libcloog-isl3_0.17.0-3_amd64.deb) ... Preparing to replace libgomp1:amd64 4.7.2-16ubuntu1 (using .../libgomp1_4.8-20130102-1ubuntu1_amd64.deb) ... Unpacking replacement libgomp1:amd64 ... Preparing to replace libitm1:amd64 4.7.2-16ubuntu1 (using .../libitm1_4.8-20130102-1ubuntu1_amd64.deb) ... Unpacking replacement libitm1:amd64 ... Preparing to replace libquadmath0:amd64 4.7.2-16ubuntu1 (using .../libquadmath0_4.8-20130102-1ubuntu1_amd64.deb) ... Unpacking replacement libquadmath0:amd64 ... Selecting previously unselected package libtsan0:amd64. Unpacking libtsan0:amd64 (from .../libtsan0_4.8-20130102-1ubuntu1_amd64.deb) ... Preparing to replace libpam-runtime 1.1.3-7ubuntu3 (using .../libpam-runtime_1.1.3-7ubuntu4_all.deb) ... Unpacking replacement libpam-runtime ... Setting up libpam-runtime (1.1.3-7ubuntu4) ... (Reading database ... 12312 files and directories currently installed.) Preparing to replace passwd 1:4.1.4.2+svn3283-3ubuntu7 (using .../passwd_1%3a4.1.5.1-1ubuntu2_amd64.deb) ... Unpacking replacement passwd ... Setting up passwd (1:4.1.5.1-1ubuntu2) ... Selecting previously unselected package cpp-4.8. (Reading database ... 12328 files and directories currently installed.) Unpacking cpp-4.8 (from .../cpp-4.8_4.8-20130102-1ubuntu1_amd64.deb) ... Preparing to replace cpp 4:4.7.2-1ubuntu8 (using .../cpp_4%3a4.8-0ubuntu10_amd64.deb) ... Unpacking replacement cpp ... Selecting previously unselected package libgcc-4.8-dev:amd64. Unpacking libgcc-4.8-dev:amd64 (from .../libgcc-4.8-dev_4.8-20130102-1ubuntu1_amd64.deb) ... Selecting previously unselected package gcc-4.8. Unpacking gcc-4.8 (from .../gcc-4.8_4.8-20130102-1ubuntu1_amd64.deb) ... Preparing to replace gcc 4:4.7.2-1ubuntu8 (using .../gcc_4%3a4.8-0ubuntu10_amd64.deb) ... Removing old gcc doc directory. Unpacking replacement gcc ... Selecting previously unselected package libstdc++-4.8-dev:amd64. Unpacking libstdc++-4.8-dev:amd64 (from .../libstdc++-4.8-dev_4.8-20130102-1ubuntu1_amd64.deb) ... Selecting previously unselected package g++-4.8. Unpacking g++-4.8 (from .../g++-4.8_4.8-20130102-1ubuntu1_amd64.deb) ... Preparing to replace g++ 4:4.7.2-1ubuntu8 (using .../g++_4%3a4.8-0ubuntu10_amd64.deb) ... Unpacking replacement g++ ... Preparing to replace patch 2.6.1-3ubuntu1 (using .../patch_2.6.1-3ubuntu2_amd64.deb) ... Unpacking replacement patch ... Preparing to replace xz-utils 5.1.1alpha+20120614-2 (using .../xz-utils_5.1.1alpha+20120614-2ubuntu1_amd64.deb) ... Unpacking replacement xz-utils ... Setting up libsqlite3-0:amd64 (3.7.15.1-1) ... Setting up libasan0:amd64 (4.8-20130102-1ubuntu1) ... Setting up libatomic1:amd64 (4.8-20130102-1ubuntu1) ... Setting up libisl10:amd64 (0.10-3) ... Setting up libcloog-isl3:amd64 (0.17.0-3) ... Setting up libgomp1:amd64 (4.8-20130102-1ubuntu1) ... Setting up libitm1:amd64 (4.8-20130102-1ubuntu1) ... Setting up libquadmath0:amd64 (4.8-20130102-1ubuntu1) ... Setting up libtsan0:amd64 (4.8-20130102-1ubuntu1) ... Setting up cpp-4.8 (4.8-20130102-1ubuntu1) ... Setting up cpp (4:4.8-0ubuntu10) ... Setting up libgcc-4.8-dev:amd64 (4.8-20130102-1ubuntu1) ... Setting up gcc-4.8 (4.8-20130102-1ubuntu1) ... Setting up gcc (4:4.8-0ubuntu10) ... Setting up libstdc++-4.8-dev:amd64 (4.8-20130102-1ubuntu1) ... Setting up g++-4.8 (4.8-20130102-1ubuntu1) ... Setting up g++ (4:4.8-0ubuntu10) ... Setting up patch (2.6.1-3ubuntu2) ... Setting up xz-utils (5.1.1alpha+20120614-2ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '32593683fd63c9e9ad3ca732d20591ceb4715a39', 'amd64', 'raring', '--nolog', '--batch', '--archive=ubuntu', '--dist=raring', '--purpose=COPY', '--architecture=amd64', '--comp=universe', 'dolfin_1.0.0-7ubuntu1.dsc'] Initiating build 32593683fd63c9e9ad3ca732d20591ceb4715a39 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.2.0-35-generic #55-Ubuntu SMP Wed Dec 5 17:42:16 UTC 2012 x86_64 Automatic build of dolfin_1.0.0-7ubuntu1 on allspice by sbuild/amd64 1.170.5 Build started at 20130104-0244 ****************************************************************************** dolfin_1.0.0-7ubuntu1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: cdbs (>= 0.4.90~), debhelper (>= 7), python-all-dev (>= 2.6.6-3~), cmake (>= 2.8.0), swig2.0, python-numpy, pkg-config, libxml2-dev, libboost-dev, libboost-program-options-dev, libboost-filesystem-dev, libboost-serialization-dev, libboost-thread-dev, libboost-iostreams-dev, libboost-mpi-dev, libboost-math-dev, libsuitesparse-dev, ufc (>= 2.0.5-3), python-ufc (>= 2.0.5-3), libptscotch-dev [!armel !armhf !kfreebsd-amd64 !kfreebsd-i386 !s390x], libpetsc3.2-dev [!armel !armhf !kfreebsd-amd64 !kfreebsd-i386 !s390x], libslepc3.2-dev [!armel !armhf !kfreebsd-amd64 !kfreebsd-i386 !s390x], libarmadillo-dev, libcgal-dev Checking for already installed source dependencies... cdbs: missing debhelper: missing python-all-dev: missing cmake: missing swig2.0: missing python-numpy: missing pkg-config: missing libxml2-dev: missing libboost-dev: missing libboost-program-options-dev: missing libboost-filesystem-dev: missing libboost-serialization-dev: missing libboost-thread-dev: missing libboost-iostreams-dev: missing libboost-mpi-dev: missing libboost-math-dev: missing libsuitesparse-dev: missing ufc: missing python-ufc: missing libptscotch-dev: missing libpetsc3.2-dev: missing libslepc3.2-dev: missing libarmadillo-dev: missing libcgal-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install cdbs debhelper python-all-dev cmake swig2.0 python-numpy pkg-config libxml2-dev libboost-dev libboost-program-options-dev libboost-filesystem-dev libboost-serialization-dev libboost-thread-dev libboost-iostreams-dev libboost-mpi-dev libboost-math-dev libsuitesparse-dev ufc python-ufc libptscotch-dev libpetsc3.2-dev libslepc3.2-dev libarmadillo-dev libcgal-dev Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: g++-4.7 Use 'apt-get autoremove' to remove it. The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils cmake-data dh-apparmor dh-translations emacsen-common file fontconfig fontconfig-config gettext gettext-base gfortran gfortran-4.8 groff-base hdf5-helpers html2text intltool intltool-debian libamd2.2.0 libarchive12 libarmadillo3 libarpack2 libarpack2-dev libasprintf-dev libasprintf0c2 libaudio2 libblacs-mpi-dev libblacs-mpi1 libblas-dev libblas3 libboost-date-time1.49-dev libboost-date-time1.49.0 libboost-filesystem1.49-dev libboost-filesystem1.49.0 libboost-iostreams1.49-dev libboost-iostreams1.49.0 libboost-math1.49-dev libboost-math1.49.0 libboost-mpi1.49-dev libboost-mpi1.49.0 libboost-program-options1.49-dev libboost-program-options1.49.0 libboost-regex1.49-dev libboost-regex1.49.0 libboost-serialization1.49-dev libboost-serialization1.49.0 libboost-system1.49-dev libboost-system1.49.0 libboost-thread1.49-dev libboost-thread1.49.0 libboost1.49-dev libbtf1.1.0 libcamd2.2.0 libccolamd2.7.1 libcgal9 libcholmod1.7.1 libcolamd2.7.1 libcroco3 libcsparse2.2.3 libcurl3 libcxsparse2.2.3 libencode-locale-perl libexpat1 libexpat1-dev libfile-listing-perl libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0 libgfortran-4.8-dev libgfortran3 libgl1-mesa-glx libglapi-mesa libgmp-dev libgmpxx4ldbl libhdf5-mpi-dev libhdf5-openmpi-7 libhdf5-openmpi-dev libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhypre-2.8.0b libhypre-dev libibverbs-dev libibverbs1 libice6 libicu-dev libicu48 libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libklu1.1.0 liblapack-dev liblapack3 liblcms1 libldl2.0.1 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmng1 libmpfr-dev libmumps-4.10.0 libmumps-dev libnet-http-perl libnet-ssleay-perl libnettle4 libnuma1 libopenmpi-dev libopenmpi1.3 libparpack2 libpetsc3.2 libpipeline1 libpopt0 libpthread-stubs0 libpthread-stubs0-dev libptscotch-5.1 libpython-dev libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network libqt4-opengl libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtgui4 libscalapack-mpi-dev libscalapack-mpi1 libscotch-5.1 libscotch-dev libsigsegv2 libslepc3.2 libsm6 libspooles-dev libspooles2.2 libsuperlu3 libsuperlu3-dev libtiff5 libtorque2 libumfpack5.4.0 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-glx0 libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext6 libxfixes3 libxi6 libxml-parser-perl libxml2 libxmlrpc-core-c3 libxrender1 libxt6 libxxf86vm1 m4 man-db mime-support mpi-default-bin mpi-default-dev netbase openmpi-bin openmpi-common po-debconf python python-all python-dev python-minimal python-scour python2.7 python2.7-dev python2.7-minimal qt4-linguist-tools qt4-qmake ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts dh-make gettext-doc gfortran-multilib gfortran-doc gfortran-4.8-multilib gfortran-4.8-doc libgfortran3-dbg groff libitpp-dev nas libboost-doc libboost-graph1.49-dev libboost1.49-doc libboost-chrono1.49-dev libboost-graph-parallel1.49-dev libboost-locale1.49-dev libboost-python1.49-dev libboost-random1.49-dev libboost-signals1.49-dev libboost-test1.49-dev libboost-timer1.49-dev libboost-wave1.49-dev xsltproc doxygen docbook-xml docbook-xsl default-jdk fop libgmp10-doc libhdf5-doc libdata-dump-perl icu-doc liblcms-utils libcrypt-ssleay-perl libmpfr-doc petsc-dev libpetsc3.2-dbg petsc3.2-doc libluminate-dev libqt4-declarative-folderlistmodel libqt4-declarative-gestures libqt4-declarative-particles libqt4-declarative-shaders qt4-qmlviewer libmysqlclient-dev libpq-dev libsqlite3-dev qt4-dev-tools qt4-doc unixodbc-dev libthai0 qt4-qtconfig scalapack-doc libslepc3.2-dbg slepc3.2-doc spooles-doc libauthen-ntlm-perl libxcb-doc less www-browser libmail-box-perl python-doc python-tk python-numpy-doc python-numpy-dbg python-nose python-rsvg python-cairo python2.7-doc binfmt-support swig2.0-examples swig2.0-doc ufc-doc Recommended packages: curl wget lynx-cur libgl1-mesa-dri libtxc-dxtn-s2tc0 libhtml-format-perl libio-socket-inet6-perl libio-socket-ip-perl qdbus libqt4-opengl-dev libqtwebkit-dev libqt4-sql-mysql libqt4-sql-odbc libqt4-sql-psql libqt4-sql-sqlite libcups2 libhtml-form-perl libhttp-daemon-perl libmailtools-perl libx11-doc xml-core openmpi-checkpoint libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs cmake cmake-data debhelper dh-apparmor dh-translations emacsen-common file fontconfig fontconfig-config gettext gettext-base gfortran gfortran-4.8 groff-base hdf5-helpers html2text intltool intltool-debian libamd2.2.0 libarchive12 libarmadillo-dev libarmadillo3 libarpack2 libarpack2-dev libasprintf-dev libasprintf0c2 libaudio2 libblacs-mpi-dev libblacs-mpi1 libblas-dev libblas3 libboost-date-time1.49-dev libboost-date-time1.49.0 libboost-dev libboost-filesystem-dev libboost-filesystem1.49-dev libboost-filesystem1.49.0 libboost-iostreams-dev libboost-iostreams1.49-dev libboost-iostreams1.49.0 libboost-math-dev libboost-math1.49-dev libboost-math1.49.0 libboost-mpi-dev libboost-mpi1.49-dev libboost-mpi1.49.0 libboost-program-options-dev libboost-program-options1.49-dev libboost-program-options1.49.0 libboost-regex1.49-dev libboost-regex1.49.0 libboost-serialization-dev libboost-serialization1.49-dev libboost-serialization1.49.0 libboost-system1.49-dev libboost-system1.49.0 libboost-thread-dev libboost-thread1.49-dev libboost-thread1.49.0 libboost1.49-dev libbtf1.1.0 libcamd2.2.0 libccolamd2.7.1 libcgal-dev libcgal9 libcholmod1.7.1 libcolamd2.7.1 libcroco3 libcsparse2.2.3 libcurl3 libcxsparse2.2.3 libencode-locale-perl libexpat1 libexpat1-dev libfile-listing-perl libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0 libgfortran-4.8-dev libgfortran3 libgl1-mesa-glx libglapi-mesa libgmp-dev libgmpxx4ldbl libhdf5-mpi-dev libhdf5-openmpi-7 libhdf5-openmpi-dev libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhypre-2.8.0b libhypre-dev libibverbs-dev libibverbs1 libice6 libicu-dev libicu48 libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libklu1.1.0 liblapack-dev liblapack3 liblcms1 libldl2.0.1 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmng1 libmpfr-dev libmumps-4.10.0 libmumps-dev libnet-http-perl libnet-ssleay-perl libnettle4 libnuma1 libopenmpi-dev libopenmpi1.3 libparpack2 libpetsc3.2 libpetsc3.2-dev libpipeline1 libpopt0 libpthread-stubs0 libpthread-stubs0-dev libptscotch-5.1 libptscotch-dev libpython-dev libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network libqt4-opengl libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtgui4 libscalapack-mpi-dev libscalapack-mpi1 libscotch-5.1 libscotch-dev libsigsegv2 libslepc3.2 libslepc3.2-dev libsm6 libspooles-dev libspooles2.2 libsuitesparse-dev libsuperlu3 libsuperlu3-dev libtiff5 libtorque2 libumfpack5.4.0 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-glx0 libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext6 libxfixes3 libxi6 libxml-parser-perl libxml2 libxml2-dev libxmlrpc-core-c3 libxrender1 libxt6 libxxf86vm1 m4 man-db mime-support mpi-default-bin mpi-default-dev netbase openmpi-bin openmpi-common pkg-config po-debconf python python-all python-all-dev python-dev python-minimal python-numpy python-scour python-ufc python2.7 python2.7-dev python2.7-minimal qt4-linguist-tools qt4-qmake swig2.0 ttf-dejavu-core ucf ufc x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 240 newly installed, 0 to remove and 0 not upgraded. Need to get 180 MB of archives. After this operation, 690 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libmagic1 libpopt0 libasprintf0c2 libpipeline1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 groff-base bsdmainutils man-db ucf ttf-dejavu-core fontconfig-config libnettle4 libxml2 libarchive12 x11-common libice6 libsm6 libxt6 libaudio2 libcroco3 libcurl3 libfreetype6 libfontconfig1 libunistring0 libgettextpo0 libgfortran3 libglapi-mesa libx11-xcb1 libxcb-glx0 libxdamage1 libxfixes3 libxxf86vm1 libgl1-mesa-glx libgmpxx4ldbl libicu48 libjpeg-turbo8 liblcms1 libjpeg8 libmng1 libpython2.7-minimal mime-support libpython2.7-stdlib libpython2.7 libexpat1-dev libpython2.7-dev libqtcore4 libqt4-xml libqt4-dbus libqt4-network libqt4-script libqt4-sql libqt4-xmlpatterns fontconfig libjbig0 libtiff5 libxi6 libxrender1 libqtgui4 libqt4-declarative libqt4-designer libqt4-help libqt4-opengl libqt4-qt3support libqt4-scripttools libqt4-svg libqt4-test file netbase gettext-base libnuma1 libsigsegv2 m4 autoconf autotools-dev automake html2text libasprintf-dev libgettextpo-dev gettext intltool-debian po-debconf dh-apparmor debhelper liburi-perl libencode-locale-perl libhttp-date-perl libfile-listing-perl libhtml-tagset-perl libhtml-parser-perl libhtml-tree-perl liblwp-mediatypes-perl libhttp-message-perl libhttp-cookies-perl libhttp-negotiate-perl libnet-ssleay-perl libio-socket-ssl-perl libnet-http-perl liblwp-protocol-https-perl libwww-robotrules-perl libwww-perl libxml-parser-perl intltool dh-translations python2.7-minimal python2.7 python-minimal python python-scour cdbs libxmlrpc-core-c3 emacsen-common cmake-data cmake libgfortran-4.8-dev gfortran-4.8 gfortran hdf5-helpers libamd2.2.0 libblas3 liblapack3 libarmadillo3 libarmadillo-dev libarpack2 libblas-dev liblapack-dev libarpack2-dev libboost1.49-dev libboost-date-time1.49.0 libboost-serialization1.49.0 libboost-serialization1.49-dev libboost-date-time1.49-dev libboost-dev libboost-system1.49.0 libboost-filesystem1.49.0 libboost-system1.49-dev libboost-filesystem1.49-dev libboost-filesystem-dev libboost-regex1.49.0 libicu-dev libboost-regex1.49-dev libboost-iostreams1.49.0 libboost-iostreams1.49-dev libboost-iostreams-dev libboost-math1.49.0 libboost-math1.49-dev libboost-math-dev libibverbs1 libtorque2 libopenmpi1.3 libboost-mpi1.49.0 openmpi-common libibverbs-dev libopenmpi-dev mpi-default-dev libboost-mpi1.49-dev libboost-mpi-dev libboost-program-options1.49.0 libboost-program-options1.49-dev libboost-program-options-dev libboost-serialization-dev libboost-thread1.49.0 libboost-thread1.49-dev libboost-thread-dev libbtf1.1.0 libcamd2.2.0 libccolamd2.7.1 libcgal9 libgmp-dev libmpfr-dev libqt4-dev-bin qt4-linguist-tools qt4-qmake libqt4-dev zlib1g-dev libcgal-dev libcolamd2.7.1 libcholmod1.7.1 libcsparse2.2.3 libcxsparse2.2.3 libjpeg-turbo8-dev libjpeg8-dev libjpeg-dev libklu1.1.0 libldl2.0.1 libparpack2 libpthread-stubs0 libpthread-stubs0-dev libpython-dev libumfpack5.4.0 libsuitesparse-dev libsuperlu3 libsuperlu3-dev xorg-sgml-doctools x11proto-core-dev libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libxcb1-dev libx11-dev libxml2-dev openmpi-bin pkg-config python-all python2.7-dev python-dev python-all-dev python-numpy swig2.0 mpi-default-bin libblacs-mpi1 libblacs-mpi-dev libhdf5-openmpi-7 libhdf5-openmpi-dev libhdf5-mpi-dev libhypre-2.8.0b libhypre-dev libscalapack-mpi1 libmumps-4.10.0 libscalapack-mpi-dev libmumps-dev libscotch-5.1 libptscotch-5.1 libspooles2.2 libpetsc3.2 libspooles-dev libscotch-dev libptscotch-dev libpetsc3.2-dev libslepc3.2 libslepc3.2-dev ufc python-ufc Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ raring/main libexpat1 amd64 2.1.0-2 [129 kB] Get:2 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu/ raring/main libgfortran3 amd64 4.8-20130102-1ubuntu1 [347 kB] Get:3 http://ftpmaster.internal/ubuntu/ raring/main libmagic1 amd64 5.11-2 [171 kB] Get:4 http://ftpmaster.internal/ubuntu/ raring/main libpopt0 amd64 1.16-7ubuntu3 [28.9 kB] Get:5 http://ftpmaster.internal/ubuntu/ raring/main libasprintf0c2 amd64 0.18.1.1-10ubuntu1 [7116 B] Get:6 http://ftpmaster.internal/ubuntu/ raring/main libpipeline1 amd64 1.2.2-1 [26.9 kB] Get:7 http://ftpmaster.internal/ubuntu/ raring/main libxau6 amd64 1:1.0.7-1 [8592 B] Get:8 http://ftpmaster.internal/ubuntu/ raring/main libxdmcp6 amd64 1:1.1.1-1 [12.8 kB] Get:9 http://ftpmaster.internal/ubuntu/ raring/main libxcb1 amd64 1.8.1-2 [44.9 kB] Get:10 http://ftpmaster.internal/ubuntu/ raring/main libx11-data all 2:1.5.0-1 [181 kB] Get:11 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu/ raring/main libgfortran-4.8-dev amd64 4.8-20130102-1ubuntu1 [442 kB] Get:12 http://ftpmaster.internal/ubuntu/ raring/main libx11-6 amd64 2:1.5.0-1 [771 kB] Get:13 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu/ raring/main gfortran-4.8 amd64 4.8-20130102-1ubuntu1 [6127 kB] Get:14 http://ftpmaster.internal/ubuntu/ raring/main libxext6 amd64 2:1.3.1-2 [33.7 kB] Get:15 http://ftpmaster.internal/ubuntu/ raring/main groff-base amd64 1.21-9 [1044 kB] Get:16 http://ftpmaster.internal/ubuntu/ raring/main bsdmainutils amd64 9.0.3ubuntu1 [201 kB] Get:17 http://ftpmaster.internal/ubuntu/ raring/main man-db amd64 2.6.3-3 [637 kB] Get:18 http://ftpmaster.internal/ubuntu/ raring/main ucf all 3.0025+nmu3 [55.0 kB] Get:19 http://ftpmaster.internal/ubuntu/ raring/main ttf-dejavu-core all 2.33-3ubuntu1 [1020 kB] Get:20 http://ftpmaster.internal/ubuntu/ raring/main fontconfig-config all 2.10.2-0ubuntu1 [46.3 kB] Get:21 http://ftpmaster.internal/ubuntu/ raring/main libnettle4 amd64 2.4-3 [94.7 kB] Get:22 http://ftpmaster.internal/ubuntu/ raring/main libxml2 amd64 2.9.0+dfsg1-4 [691 kB] Get:23 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu/ raring/main gfortran amd64 4:4.8-0ubuntu10 [1208 B] Get:24 http://ftpmaster.internal/ubuntu/ raring/main libarchive12 amd64 3.0.4-2git2 [294 kB] Get:25 http://ftpmaster.internal/ubuntu/ raring/main x11-common all 1:7.7+1ubuntu4 [58.1 kB] Get:26 http://ftpmaster.internal/ubuntu/ raring/main libice6 amd64 2:1.0.8-2 [47.0 kB] Get:27 http://ftpmaster.internal/ubuntu/ raring/main libsm6 amd64 2:1.2.1-2 [18.1 kB] Get:28 http://ftpmaster.internal/ubuntu/ raring/main libxt6 amd64 1:1.1.3-1 [187 kB] Get:29 http://ftpmaster.internal/ubuntu/ raring/main libaudio2 amd64 1.9.3-5 [57.3 kB] Get:30 http://ftpmaster.internal/ubuntu/ raring/main libcroco3 amd64 0.6.8-1 [82.1 kB] Get:31 http://ftpmaster.internal/ubuntu/ raring/main libcurl3 amd64 7.28.0-3ubuntu1 [243 kB] Get:32 http://ftpmaster.internal/ubuntu/ raring/main libfreetype6 amd64 2.4.10-0ubuntu1 [344 kB] Get:33 http://ftpmaster.internal/ubuntu/ raring/main libfontconfig1 amd64 2.10.2-0ubuntu1 [136 kB] Get:34 http://ftpmaster.internal/ubuntu/ raring/main libunistring0 amd64 0.9.3-5build1 [430 kB] Get:35 http://ftpmaster.internal/ubuntu/ raring/main libgettextpo0 amd64 0.18.1.1-10ubuntu1 [124 kB] Get:36 http://ftpmaster.internal/ubuntu/ raring/main libglapi-mesa amd64 9.0.1-0ubuntu1 [21.7 kB] Get:37 http://ftpmaster.internal/ubuntu/ raring/main libx11-xcb1 amd64 2:1.5.0-1 [10.8 kB] Get:38 http://ftpmaster.internal/ubuntu/ raring/main libxcb-glx0 amd64 1.8.1-2 [26.4 kB] Get:39 http://ftpmaster.internal/ubuntu/ raring/main libxdamage1 amd64 1:1.1.3-2build2 [7654 B] Get:40 http://ftpmaster.internal/ubuntu/ raring/main libxfixes3 amd64 1:5.0-4ubuntu5 [12.5 kB] Get:41 http://ftpmaster.internal/ubuntu/ raring/main libxxf86vm1 amd64 1:1.1.2-1 [11.9 kB] Get:42 http://ftpmaster.internal/ubuntu/ raring/main libgl1-mesa-glx amd64 9.0.1-0ubuntu1 [109 kB] Get:43 http://ftpmaster.internal/ubuntu/ raring/main libgmpxx4ldbl amd64 2:5.0.5+dfsg-2ubuntu3 [9150 B] Get:44 http://ftpmaster.internal/ubuntu/ raring/main libicu48 amd64 4.8.1.1-10 [4719 kB] Get:45 http://ftpmaster.internal/ubuntu/ raring/main libjpeg-turbo8 amd64 1.2.1-0ubuntu2 [114 kB] Get:46 http://ftpmaster.internal/ubuntu/ raring/main liblcms1 amd64 1.19.dfsg-1.2ubuntu2 [106 kB] Get:47 http://ftpmaster.internal/ubuntu/ raring/main libjpeg8 amd64 8c-2ubuntu7 [2112 B] Get:48 http://ftpmaster.internal/ubuntu/ raring/main libmng1 amd64 1.0.10-3build1 [234 kB] Get:49 http://ftpmaster.internal/ubuntu/ raring/main libpython2.7-minimal amd64 2.7.3-13ubuntu1 [503 kB] Get:50 http://ftpmaster.internal/ubuntu/ raring/main mime-support all 3.52-1ubuntu2 [31.0 kB] Get:51 http://ftpmaster.internal/ubuntu/ raring/main libpython2.7-stdlib amd64 2.7.3-13ubuntu1 [2409 kB] Get:52 http://ftpmaster.internal/ubuntu/ raring/main libpython2.7 amd64 2.7.3-13ubuntu1 [1207 kB] Get:53 http://ftpmaster.internal/ubuntu/ raring/main libexpat1-dev amd64 2.1.0-2 [213 kB] Get:54 http://ftpmaster.internal/ubuntu/ raring/main libpython2.7-dev amd64 2.7.3-13ubuntu1 [22.6 MB] Get:55 http://ftpmaster.internal/ubuntu/ raring/main libqtcore4 amd64 4:4.8.3+dfsg-0ubuntu3 [2061 kB] Get:56 http://ftpmaster.internal/ubuntu/ raring/main libqt4-xml amd64 4:4.8.3+dfsg-0ubuntu3 [90.4 kB] Get:57 http://ftpmaster.internal/ubuntu/ raring/main libqt4-dbus amd64 4:4.8.3+dfsg-0ubuntu3 [178 kB] Get:58 http://ftpmaster.internal/ubuntu/ raring/main libqt4-network amd64 4:4.8.3+dfsg-0ubuntu3 [527 kB] Get:59 http://ftpmaster.internal/ubuntu/ raring/main libqt4-script amd64 4:4.8.3+dfsg-0ubuntu3 [771 kB] Get:60 http://ftpmaster.internal/ubuntu/ raring/main libqt4-sql amd64 4:4.8.3+dfsg-0ubuntu3 [96.1 kB] Get:61 http://ftpmaster.internal/ubuntu/ raring/main libqt4-xmlpatterns amd64 4:4.8.3+dfsg-0ubuntu3 [1009 kB] Get:62 http://ftpmaster.internal/ubuntu/ raring/main fontconfig amd64 2.10.2-0ubuntu1 [170 kB] Get:63 http://ftpmaster.internal/ubuntu/ raring/main libjbig0 amd64 2.0-2ubuntu1 [28.6 kB] Get:64 http://ftpmaster.internal/ubuntu/ raring/main libtiff5 amd64 4.0.2-4ubuntu2 [167 kB] Get:65 http://ftpmaster.internal/ubuntu/ raring/main libxi6 amd64 2:1.6.1-1 [30.6 kB] Get:66 http://ftpmaster.internal/ubuntu/ raring/main libxrender1 amd64 1:0.9.7-1 [20.5 kB] Get:67 http://ftpmaster.internal/ubuntu/ raring/main libqtgui4 amd64 4:4.8.3+dfsg-0ubuntu3 [3994 kB] Get:68 http://ftpmaster.internal/ubuntu/ raring/main libqt4-declarative amd64 4:4.8.3+dfsg-0ubuntu3 [1062 kB] Get:69 http://ftpmaster.internal/ubuntu/ raring/main libqt4-designer amd64 4:4.8.3+dfsg-0ubuntu3 [3579 kB] Get:70 http://ftpmaster.internal/ubuntu/ raring/main libqt4-help amd64 4:4.8.3+dfsg-0ubuntu3 [197 kB] Get:71 http://ftpmaster.internal/ubuntu/ raring/main libqt4-opengl amd64 4:4.8.3+dfsg-0ubuntu3 [295 kB] Get:72 http://ftpmaster.internal/ubuntu/ raring/main libqt4-qt3support amd64 4:4.8.3+dfsg-0ubuntu3 [1014 kB] Get:73 http://ftpmaster.internal/ubuntu/ raring/main libqt4-scripttools amd64 4:4.8.3+dfsg-0ubuntu3 [216 kB] Get:74 http://ftpmaster.internal/ubuntu/ raring/main libqt4-svg amd64 4:4.8.3+dfsg-0ubuntu3 [135 kB] Get:75 http://ftpmaster.internal/ubuntu/ raring/main libqt4-test amd64 4:4.8.3+dfsg-0ubuntu3 [60.0 kB] Get:76 http://ftpmaster.internal/ubuntu/ raring/main file amd64 5.11-2 [18.3 kB] Get:77 http://ftpmaster.internal/ubuntu/ raring/main netbase all 5.0ubuntu1 [13.8 kB] Get:78 http://ftpmaster.internal/ubuntu/ raring/main gettext-base amd64 0.18.1.1-10ubuntu1 [77.6 kB] Get:79 http://ftpmaster.internal/ubuntu/ raring/main libnuma1 amd64 2.0.8-1 [23.2 kB] Get:80 http://ftpmaster.internal/ubuntu/ raring/main libsigsegv2 amd64 2.9-4ubuntu3 [14.7 kB] Get:81 http://ftpmaster.internal/ubuntu/ raring/main m4 amd64 1.4.16-4ubuntu1 [204 kB] Get:82 http://ftpmaster.internal/ubuntu/ raring/main autoconf all 2.69-1ubuntu1 [568 kB] Get:83 http://ftpmaster.internal/ubuntu/ raring/main autotools-dev all 20120608.1 [42.9 kB] Get:84 http://ftpmaster.internal/ubuntu/ raring/main automake all 1:1.11.6-1ubuntu1 [578 kB] Get:85 http://ftpmaster.internal/ubuntu/ raring/main html2text amd64 1.3.2a-15build1 [93.3 kB] Get:86 http://ftpmaster.internal/ubuntu/ raring/main libasprintf-dev amd64 0.18.1.1-10ubuntu1 [4564 B] Get:87 http://ftpmaster.internal/ubuntu/ raring/main libgettextpo-dev amd64 0.18.1.1-10ubuntu1 [163 kB] Get:88 http://ftpmaster.internal/ubuntu/ raring/main gettext amd64 0.18.1.1-10ubuntu1 [1043 kB] Get:89 http://ftpmaster.internal/ubuntu/ raring/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:90 http://ftpmaster.internal/ubuntu/ raring/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:91 http://ftpmaster.internal/ubuntu/ raring/main dh-apparmor all 2.8.0-0ubuntu10 [9008 B] Get:92 http://ftpmaster.internal/ubuntu/ raring/main debhelper all 9.20120909ubuntu1 [631 kB] Get:93 http://ftpmaster.internal/ubuntu/ raring/main liburi-perl all 1.60-1 [89.6 kB] Get:94 http://ftpmaster.internal/ubuntu/ raring/main libencode-locale-perl all 1.03-1 [12.4 kB] Get:95 http://ftpmaster.internal/ubuntu/ raring/main libhttp-date-perl all 6.02-1 [10.4 kB] Get:96 http://ftpmaster.internal/ubuntu/ raring/main libfile-listing-perl all 6.04-1 [9774 B] Get:97 http://ftpmaster.internal/ubuntu/ raring/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:98 http://ftpmaster.internal/ubuntu/ raring/main libhtml-parser-perl amd64 3.69-2 [99.5 kB] Get:99 http://ftpmaster.internal/ubuntu/ raring/main libhtml-tree-perl all 5.02-1 [213 kB] Get:100 http://ftpmaster.internal/ubuntu/ raring/main liblwp-mediatypes-perl all 6.02-1 [21.7 kB] Get:101 http://ftpmaster.internal/ubuntu/ raring/main libhttp-message-perl all 6.03-1 [77.6 kB] Get:102 http://ftpmaster.internal/ubuntu/ raring/main libhttp-cookies-perl all 6.00-2 [23.3 kB] Get:103 http://ftpmaster.internal/ubuntu/ raring/main libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:104 http://ftpmaster.internal/ubuntu/ raring/main libnet-ssleay-perl amd64 1.48-1 [316 kB] Get:105 http://ftpmaster.internal/ubuntu/ raring/main libio-socket-ssl-perl all 1.76-2ubuntu1 [51.4 kB] Get:106 http://ftpmaster.internal/ubuntu/ raring/main libnet-http-perl all 6.03-2 [24.0 kB] Get:107 http://ftpmaster.internal/ubuntu/ raring/main liblwp-protocol-https-perl all 6.03-1 [7178 B] Get:108 http://ftpmaster.internal/ubuntu/ raring/main libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:109 http://ftpmaster.internal/ubuntu/ raring/main libwww-perl all 6.04-1 [156 kB] Get:110 http://ftpmaster.internal/ubuntu/ raring/main libxml-parser-perl amd64 2.41-1build2 [294 kB] Get:111 http://ftpmaster.internal/ubuntu/ raring/main intltool all 0.50.2-2 [52.0 kB] Get:112 http://ftpmaster.internal/ubuntu/ raring/main dh-translations all 117 [21.7 kB] Get:113 http://ftpmaster.internal/ubuntu/ raring/main python2.7-minimal amd64 2.7.3-13ubuntu1 [1159 kB] Get:114 http://ftpmaster.internal/ubuntu/ raring/main python2.7 amd64 2.7.3-13ubuntu1 [288 kB] Get:115 http://ftpmaster.internal/ubuntu/ raring/main python-minimal amd64 2.7.3-10ubuntu3 [32.2 kB] Get:116 http://ftpmaster.internal/ubuntu/ raring/main python amd64 2.7.3-10ubuntu3 [172 kB] Get:117 http://ftpmaster.internal/ubuntu/ raring/main python-scour all 0.26-3 [46.5 kB] Get:118 http://ftpmaster.internal/ubuntu/ raring/main cdbs all 0.4.119ubuntu1 [48.6 kB] Get:119 http://ftpmaster.internal/ubuntu/ raring/main libxmlrpc-core-c3 amd64 1.16.33-3.2ubuntu1 [183 kB] Get:120 http://ftpmaster.internal/ubuntu/ raring/main emacsen-common all 2.0.3 [17.3 kB] Get:121 http://ftpmaster.internal/ubuntu/ raring/main cmake-data all 2.8.10.1-0ubuntu3 [800 kB] Get:122 http://ftpmaster.internal/ubuntu/ raring/main cmake amd64 2.8.10.1-0ubuntu3 [4792 kB] Get:123 http://ftpmaster.internal/ubuntu/ raring/universe hdf5-helpers amd64 1.8.9-1~exp1ubuntu1 [13.6 kB] Get:124 http://ftpmaster.internal/ubuntu/ raring/main libamd2.2.0 amd64 1:3.4.0-3ubuntu1 [27.1 kB] Get:125 http://ftpmaster.internal/ubuntu/ raring/main libblas3 amd64 1.2.20110419-5 [287 kB] Get:126 http://ftpmaster.internal/ubuntu/ raring/main liblapack3 amd64 3.4.2-1~exp3 [5066 kB] Get:127 http://ftpmaster.internal/ubuntu/ raring/universe libarmadillo3 amd64 1:3.2.3+dfsg-1 [16.9 kB] Get:128 http://ftpmaster.internal/ubuntu/ raring/universe libarmadillo-dev amd64 1:3.2.3+dfsg-1 [286 kB] Get:129 http://ftpmaster.internal/ubuntu/ raring/universe libarpack2 amd64 3.1.2-2~exp1 [128 kB] Get:130 http://ftpmaster.internal/ubuntu/ raring/main libblas-dev amd64 1.2.20110419-5 [301 kB] Get:131 http://ftpmaster.internal/ubuntu/ raring/main liblapack-dev amd64 3.4.2-1~exp3 [5597 kB] Get:132 http://ftpmaster.internal/ubuntu/ raring/universe libarpack2-dev amd64 3.1.2-2~exp1 [179 kB] Get:133 http://ftpmaster.internal/ubuntu/ raring/main libboost1.49-dev amd64 1.49.0-3.1ubuntu4 [9189 kB] Get:134 http://ftpmaster.internal/ubuntu/ raring/main libboost-date-time1.49.0 amd64 1.49.0-3.1ubuntu4 [27.5 kB] Get:135 http://ftpmaster.internal/ubuntu/ raring/main libboost-serialization1.49.0 amd64 1.49.0-3.1ubuntu4 [189 kB] Get:136 http://ftpmaster.internal/ubuntu/ raring/main libboost-serialization1.49-dev amd64 1.49.0-3.1ubuntu4 [293 kB] Get:137 http://ftpmaster.internal/ubuntu/ raring/main libboost-date-time1.49-dev amd64 1.49.0-3.1ubuntu4 [25.6 kB] Get:138 http://ftpmaster.internal/ubuntu/ raring/main libboost-dev amd64 1.49.0.1 [3062 B] Get:139 http://ftpmaster.internal/ubuntu/ raring/main libboost-system1.49.0 amd64 1.49.0-3.1ubuntu4 [14.6 kB] Get:140 http://ftpmaster.internal/ubuntu/ raring/main libboost-filesystem1.49.0 amd64 1.49.0-3.1ubuntu4 [52.9 kB] Get:141 http://ftpmaster.internal/ubuntu/ raring/main libboost-system1.49-dev amd64 1.49.0-3.1ubuntu4 [11.0 kB] Get:142 http://ftpmaster.internal/ubuntu/ raring/main libboost-filesystem1.49-dev amd64 1.49.0-3.1ubuntu4 [80.7 kB] Get:143 http://ftpmaster.internal/ubuntu/ raring/main libboost-filesystem-dev amd64 1.49.0.1 [2780 B] Get:144 http://ftpmaster.internal/ubuntu/ raring/main libboost-regex1.49.0 amd64 1.49.0-3.1ubuntu4 [426 kB] Get:145 http://ftpmaster.internal/ubuntu/ raring/main libicu-dev amd64 4.8.1.1-10 [5734 kB] Get:146 http://ftpmaster.internal/ubuntu/ raring/main libboost-regex1.49-dev amd64 1.49.0-3.1ubuntu4 [637 kB] Get:147 http://ftpmaster.internal/ubuntu/ raring/main libboost-iostreams1.49.0 amd64 1.49.0-3.1ubuntu4 [38.3 kB] Get:148 http://ftpmaster.internal/ubuntu/ raring/main libboost-iostreams1.49-dev amd64 1.49.0-3.1ubuntu4 [49.8 kB] Get:149 http://ftpmaster.internal/ubuntu/ raring/main libboost-iostreams-dev amd64 1.49.0.1 [2744 B] Get:150 http://ftpmaster.internal/ubuntu/ raring/universe libboost-math1.49.0 amd64 1.49.0-3.1ubuntu4 [453 kB] Get:151 http://ftpmaster.internal/ubuntu/ raring/universe libboost-math1.49-dev amd64 1.49.0-3.1ubuntu4 [1857 kB] Get:152 http://ftpmaster.internal/ubuntu/ raring/universe libboost-math-dev amd64 1.49.0.1 [2954 B] Get:153 http://ftpmaster.internal/ubuntu/ raring/main libibverbs1 amd64 1.1.6-1ubuntu1 [28.0 kB] Get:154 http://ftpmaster.internal/ubuntu/ raring/universe libtorque2 amd64 2.4.16+dfsg-1build1 [91.6 kB] Get:155 http://ftpmaster.internal/ubuntu/ raring/universe libopenmpi1.3 amd64 1.4.5-1ubuntu1 [1375 kB] Get:156 http://ftpmaster.internal/ubuntu/ raring/universe libboost-mpi1.49.0 amd64 1.49.0-3.1ubuntu4 [62.3 kB] Get:157 http://ftpmaster.internal/ubuntu/ raring/universe openmpi-common all 1.4.5-1ubuntu1 [93.3 kB] Get:158 http://ftpmaster.internal/ubuntu/ raring/main libibverbs-dev amd64 1.1.6-1ubuntu1 [75.8 kB] Get:159 http://ftpmaster.internal/ubuntu/ raring/universe libopenmpi-dev amd64 1.4.5-1ubuntu1 [2743 kB] Get:160 http://ftpmaster.internal/ubuntu/ raring/universe mpi-default-dev amd64 1.0.1 [3648 B] Get:161 http://ftpmaster.internal/ubuntu/ raring/universe libboost-mpi1.49-dev amd64 1.49.0-3.1ubuntu4 [503 kB] Get:162 http://ftpmaster.internal/ubuntu/ raring/universe libboost-mpi-dev amd64 1.49.0.1 [2848 B] Get:163 http://ftpmaster.internal/ubuntu/ raring/main libboost-program-options1.49.0 amd64 1.49.0-3.1ubuntu4 [135 kB] Get:164 http://ftpmaster.internal/ubuntu/ raring/main libboost-program-options1.49-dev amd64 1.49.0-3.1ubuntu4 [199 kB] Get:165 http://ftpmaster.internal/ubuntu/ raring/main libboost-program-options-dev amd64 1.49.0.1 [2780 B] Get:166 http://ftpmaster.internal/ubuntu/ raring/main libboost-serialization-dev amd64 1.49.0.1 [2990 B] Get:167 http://ftpmaster.internal/ubuntu/ raring/main libboost-thread1.49.0 amd64 1.49.0-3.1ubuntu4 [41.5 kB] Get:168 http://ftpmaster.internal/ubuntu/ raring/main libboost-thread1.49-dev amd64 1.49.0-3.1ubuntu4 [43.3 kB] Get:169 http://ftpmaster.internal/ubuntu/ raring/main libboost-thread-dev amd64 1.49.0.1 [2780 B] Get:170 http://ftpmaster.internal/ubuntu/ raring/main libbtf1.1.0 amd64 1:3.4.0-3ubuntu1 [11.6 kB] Get:171 http://ftpmaster.internal/ubuntu/ raring/main libcamd2.2.0 amd64 1:3.4.0-3ubuntu1 [26.4 kB] Get:172 http://ftpmaster.internal/ubuntu/ raring/main libccolamd2.7.1 amd64 1:3.4.0-3ubuntu1 [28.6 kB] Get:173 http://ftpmaster.internal/ubuntu/ raring/universe libcgal9 amd64 4.0.2-1 [328 kB] Get:174 http://ftpmaster.internal/ubuntu/ raring/main libgmp-dev amd64 2:5.0.5+dfsg-2ubuntu3 [357 kB] Get:175 http://ftpmaster.internal/ubuntu/ raring/main libmpfr-dev amd64 3.1.0-5 [249 kB] Get:176 http://ftpmaster.internal/ubuntu/ raring/main libqt4-dev-bin amd64 4:4.8.3+dfsg-0ubuntu3 [1586 kB] Get:177 http://ftpmaster.internal/ubuntu/ raring/main qt4-linguist-tools amd64 4:4.8.3+dfsg-0ubuntu3 [814 kB] Get:178 http://ftpmaster.internal/ubuntu/ raring/main qt4-qmake amd64 4:4.8.3+dfsg-0ubuntu3 [1205 kB] Get:179 http://ftpmaster.internal/ubuntu/ raring/main libqt4-dev amd64 4:4.8.3+dfsg-0ubuntu3 [826 kB] Get:180 http://ftpmaster.internal/ubuntu/ raring/main zlib1g-dev amd64 1:1.2.7.dfsg-13ubuntu1 [179 kB] Get:181 http://ftpmaster.internal/ubuntu/ raring/universe libcgal-dev amd64 4.0.2-1 [4912 kB] Get:182 http://ftpmaster.internal/ubuntu/ raring/main libcolamd2.7.1 amd64 1:3.4.0-3ubuntu1 [20.7 kB] Get:183 http://ftpmaster.internal/ubuntu/ raring/main libcholmod1.7.1 amd64 1:3.4.0-3ubuntu1 [402 kB] Get:184 http://ftpmaster.internal/ubuntu/ raring/main libcsparse2.2.3 amd64 1:3.4.0-3ubuntu1 [34.5 kB] Get:185 http://ftpmaster.internal/ubuntu/ raring/main libcxsparse2.2.3 amd64 1:3.4.0-3ubuntu1 [110 kB] Get:186 http://ftpmaster.internal/ubuntu/ raring/main libjpeg-turbo8-dev amd64 1.2.1-0ubuntu2 [396 kB] Get:187 http://ftpmaster.internal/ubuntu/ raring/main libjpeg8-dev amd64 8c-2ubuntu7 [1544 B] Get:188 http://ftpmaster.internal/ubuntu/ raring/main libjpeg-dev all 8c-2ubuntu7 [1536 B] Get:189 http://ftpmaster.internal/ubuntu/ raring/main libklu1.1.0 amd64 1:3.4.0-3ubuntu1 [101 kB] Get:190 http://ftpmaster.internal/ubuntu/ raring/main libldl2.0.1 amd64 1:3.4.0-3ubuntu1 [11.0 kB] Get:191 http://ftpmaster.internal/ubuntu/ raring/universe libparpack2 amd64 3.1.2-2~exp1 [231 kB] Get:192 http://ftpmaster.internal/ubuntu/ raring/main libpthread-stubs0 amd64 0.3-3 [3258 B] Get:193 http://ftpmaster.internal/ubuntu/ raring/main libpthread-stubs0-dev amd64 0.3-3 [2866 B] Get:194 http://ftpmaster.internal/ubuntu/ raring/main libpython-dev amd64 2.7.3-10ubuntu3 [8960 B] Get:195 http://ftpmaster.internal/ubuntu/ raring/main libumfpack5.4.0 amd64 1:3.4.0-3ubuntu1 [353 kB] Get:196 http://ftpmaster.internal/ubuntu/ raring/main libsuitesparse-dev amd64 1:3.4.0-3ubuntu1 [1502 kB] Get:197 http://ftpmaster.internal/ubuntu/ raring/universe libsuperlu3 amd64 3.0+20070106-3 [172 kB] Get:198 http://ftpmaster.internal/ubuntu/ raring/universe libsuperlu3-dev amd64 3.0+20070106-3 [559 kB] Get:199 http://ftpmaster.internal/ubuntu/ raring/main xorg-sgml-doctools all 1:1.10-1 [12.0 kB] Get:200 http://ftpmaster.internal/ubuntu/ raring/main x11proto-core-dev all 7.0.23-1 [744 kB] Get:201 http://ftpmaster.internal/ubuntu/ raring/main libxau-dev amd64 1:1.0.7-1 [10.2 kB] Get:202 http://ftpmaster.internal/ubuntu/ raring/main libxdmcp-dev amd64 1:1.1.1-1 [26.9 kB] Get:203 http://ftpmaster.internal/ubuntu/ raring/main x11proto-input-dev all 2.2-1 [133 kB] Get:204 http://ftpmaster.internal/ubuntu/ raring/main x11proto-kb-dev all 1.0.6-2 [269 kB] Get:205 http://ftpmaster.internal/ubuntu/ raring/main xtrans-dev all 1.2.7-1 [84.3 kB] Get:206 http://ftpmaster.internal/ubuntu/ raring/main libxcb1-dev amd64 1.8.1-2 [82.6 kB] Get:207 http://ftpmaster.internal/ubuntu/ raring/main libx11-dev amd64 2:1.5.0-1 [912 kB] Get:208 http://ftpmaster.internal/ubuntu/ raring/main libxml2-dev amd64 2.9.0+dfsg1-4 [860 kB] Get:209 http://ftpmaster.internal/ubuntu/ raring/universe openmpi-bin amd64 1.4.5-1ubuntu1 [161 kB] Get:210 http://ftpmaster.internal/ubuntu/ raring/main pkg-config amd64 0.26-1ubuntu2 [41.3 kB] Get:211 http://ftpmaster.internal/ubuntu/ raring/main python-all amd64 2.7.3-10ubuntu3 [926 B] Get:212 http://ftpmaster.internal/ubuntu/ raring/main python2.7-dev amd64 2.7.3-13ubuntu1 [262 kB] Get:213 http://ftpmaster.internal/ubuntu/ raring/main python-dev amd64 2.7.3-10ubuntu3 [1128 B] Get:214 http://ftpmaster.internal/ubuntu/ raring/main python-all-dev amd64 2.7.3-10ubuntu3 [938 B] Get:215 http://ftpmaster.internal/ubuntu/ raring/main python-numpy amd64 1:1.7.0~b2-1ubuntu6 [2002 kB] Get:216 http://ftpmaster.internal/ubuntu/ raring/main swig2.0 amd64 2.0.8-1ubuntu1 [1170 kB] Get:217 http://ftpmaster.internal/ubuntu/ raring/universe mpi-default-bin amd64 1.0.1 [3042 B] Get:218 http://ftpmaster.internal/ubuntu/ raring/universe libblacs-mpi1 amd64 1.1-31ubuntu1 [64.9 kB] Get:219 http://ftpmaster.internal/ubuntu/ raring/universe libblacs-mpi-dev amd64 1.1-31ubuntu1 [72.7 kB] Get:220 http://ftpmaster.internal/ubuntu/ raring/universe libhdf5-openmpi-7 amd64 1.8.9-1~exp1ubuntu1 [1395 kB] Get:221 http://ftpmaster.internal/ubuntu/ raring/universe libhdf5-openmpi-dev amd64 1.8.9-1~exp1ubuntu1 [7274 kB] Get:222 http://ftpmaster.internal/ubuntu/ raring/universe libhdf5-mpi-dev amd64 1.8.9-1~exp1ubuntu1 [3082 B] Get:223 http://ftpmaster.internal/ubuntu/ raring/universe libhypre-2.8.0b amd64 2.8.0b-1 [1762 kB] Get:224 http://ftpmaster.internal/ubuntu/ raring/universe libhypre-dev all 2.8.0b-1 [157 kB] Get:225 http://ftpmaster.internal/ubuntu/ raring/universe libscalapack-mpi1 amd64 1.8.0-9 [3441 kB] Get:226 http://ftpmaster.internal/ubuntu/ raring/universe libmumps-4.10.0 amd64 4.10.0.dfsg-3 [2139 kB] Get:227 http://ftpmaster.internal/ubuntu/ raring/universe libscalapack-mpi-dev amd64 1.8.0-9 [3814 kB] Get:228 http://ftpmaster.internal/ubuntu/ raring/universe libmumps-dev amd64 4.10.0.dfsg-3 [2288 kB] Get:229 http://ftpmaster.internal/ubuntu/ raring/universe libscotch-5.1 amd64 5.1.12b.dfsg-2 [794 kB] Get:230 http://ftpmaster.internal/ubuntu/ raring/universe libptscotch-5.1 amd64 5.1.12b.dfsg-2 [1276 kB] Get:231 http://ftpmaster.internal/ubuntu/ raring/universe libspooles2.2 amd64 2.2-9 [558 kB] Get:232 http://ftpmaster.internal/ubuntu/ raring/universe libpetsc3.2 amd64 3.2.dfsg-6ubuntu1 [2746 kB] Get:233 http://ftpmaster.internal/ubuntu/ raring/universe libspooles-dev amd64 2.2-9 [794 kB] Get:234 http://ftpmaster.internal/ubuntu/ raring/universe libscotch-dev amd64 5.1.12b.dfsg-2 [4086 kB] Get:235 http://ftpmaster.internal/ubuntu/ raring/universe libptscotch-dev amd64 5.1.12b.dfsg-2 [6897 kB] Get:236 http://ftpmaster.internal/ubuntu/ raring/universe libpetsc3.2-dev amd64 3.2.dfsg-6ubuntu1 [5885 kB] Get:237 http://ftpmaster.internal/ubuntu/ raring/universe libslepc3.2 amd64 3.2-p5-1 [372 kB] Get:238 http://ftpmaster.internal/ubuntu/ raring/universe libslepc3.2-dev amd64 3.2-p5-1 [1059 kB] Get:239 http://ftpmaster.internal/ubuntu/ raring/universe ufc all 2.0.5-3 [7446 B] Get:240 http://ftpmaster.internal/ubuntu/ raring/universe python-ufc amd64 2.0.5-3 [55.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 180 MB in 16s (11.1 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... 13179 files and directories currently installed.) Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-2_amd64.deb) ... Selecting previously unselected package libmagic1:amd64. Unpacking libmagic1:amd64 (from .../libmagic1_5.11-2_amd64.deb) ... Selecting previously unselected package libpopt0:amd64. Unpacking libpopt0:amd64 (from .../libpopt0_1.16-7ubuntu3_amd64.deb) ... Selecting previously unselected package libasprintf0c2:amd64. Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.1.1-10ubuntu1_amd64.deb) ... Selecting previously unselected package libpipeline1:amd64. Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.2-1_amd64.deb) ... Selecting previously unselected package libxau6:amd64. Unpacking libxau6:amd64 (from .../libxau6_1%3a1.0.7-1_amd64.deb) ... Selecting previously unselected package libxdmcp6:amd64. Unpacking libxdmcp6:amd64 (from .../libxdmcp6_1%3a1.1.1-1_amd64.deb) ... Selecting previously unselected package libxcb1:amd64. 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Selecting previously unselected package libboost-thread1.49.0. Unpacking libboost-thread1.49.0 (from .../libboost-thread1.49.0_1.49.0-3.1ubuntu4_amd64.deb) ... Selecting previously unselected package libboost-thread1.49-dev. Unpacking libboost-thread1.49-dev (from .../libboost-thread1.49-dev_1.49.0-3.1ubuntu4_amd64.deb) ... Selecting previously unselected package libboost-thread-dev. Unpacking libboost-thread-dev (from .../libboost-thread-dev_1.49.0.1_amd64.deb) ... Selecting previously unselected package libbtf1.1.0. Unpacking libbtf1.1.0 (from .../libbtf1.1.0_1%3a3.4.0-3ubuntu1_amd64.deb) ... Selecting previously unselected package libcamd2.2.0. Unpacking libcamd2.2.0 (from .../libcamd2.2.0_1%3a3.4.0-3ubuntu1_amd64.deb) ... Selecting previously unselected package libccolamd2.7.1. Unpacking libccolamd2.7.1 (from .../libccolamd2.7.1_1%3a3.4.0-3ubuntu1_amd64.deb) ... Selecting previously unselected package libcgal9. Unpacking libcgal9 (from .../libcgal9_4.0.2-1_amd64.deb) ... Selecting previously unselected package libgmp-dev:amd64. Unpacking libgmp-dev:amd64 (from .../libgmp-dev_2%3a5.0.5+dfsg-2ubuntu3_amd64.deb) ... Selecting previously unselected package libmpfr-dev:amd64. Unpacking libmpfr-dev:amd64 (from .../libmpfr-dev_3.1.0-5_amd64.deb) ... Selecting previously unselected package libqt4-dev-bin. Unpacking libqt4-dev-bin (from .../libqt4-dev-bin_4%3a4.8.3+dfsg-0ubuntu3_amd64.deb) ... Selecting previously unselected package qt4-linguist-tools. Unpacking qt4-linguist-tools (from .../qt4-linguist-tools_4%3a4.8.3+dfsg-0ubuntu3_amd64.deb) ... Selecting previously unselected package qt4-qmake. Unpacking qt4-qmake (from .../qt4-qmake_4%3a4.8.3+dfsg-0ubuntu3_amd64.deb) ... Selecting previously unselected package libqt4-dev. Unpacking libqt4-dev (from .../libqt4-dev_4%3a4.8.3+dfsg-0ubuntu3_amd64.deb) ... Selecting previously unselected package zlib1g-dev:amd64. Unpacking zlib1g-dev:amd64 (from .../zlib1g-dev_1%3a1.2.7.dfsg-13ubuntu1_amd64.deb) ... Selecting previously unselected package libcgal-dev. Unpacking libcgal-dev (from .../libcgal-dev_4.0.2-1_amd64.deb) ... Selecting previously unselected package libcolamd2.7.1. Unpacking libcolamd2.7.1 (from .../libcolamd2.7.1_1%3a3.4.0-3ubuntu1_amd64.deb) ... Selecting previously unselected package libcholmod1.7.1. Unpacking libcholmod1.7.1 (from .../libcholmod1.7.1_1%3a3.4.0-3ubuntu1_amd64.deb) ... Selecting previously unselected package libcsparse2.2.3. Unpacking libcsparse2.2.3 (from .../libcsparse2.2.3_1%3a3.4.0-3ubuntu1_amd64.deb) ... Selecting previously unselected package libcxsparse2.2.3. Unpacking libcxsparse2.2.3 (from .../libcxsparse2.2.3_1%3a3.4.0-3ubuntu1_amd64.deb) ... Selecting previously unselected package libjpeg-turbo8-dev:amd64. Unpacking libjpeg-turbo8-dev:amd64 (from .../libjpeg-turbo8-dev_1.2.1-0ubuntu2_amd64.deb) ... Selecting previously unselected package libjpeg8-dev:amd64. Unpacking libjpeg8-dev:amd64 (from .../libjpeg8-dev_8c-2ubuntu7_amd64.deb) ... Selecting previously unselected package libjpeg-dev. Unpacking libjpeg-dev (from .../libjpeg-dev_8c-2ubuntu7_all.deb) ... Selecting previously unselected package libklu1.1.0. Unpacking libklu1.1.0 (from .../libklu1.1.0_1%3a3.4.0-3ubuntu1_amd64.deb) ... Selecting previously unselected package libldl2.0.1. Unpacking libldl2.0.1 (from .../libldl2.0.1_1%3a3.4.0-3ubuntu1_amd64.deb) ... Selecting previously unselected package libparpack2. Unpacking libparpack2 (from .../libparpack2_3.1.2-2~exp1_amd64.deb) ... Selecting previously unselected package libpthread-stubs0:amd64. Unpacking libpthread-stubs0:amd64 (from .../libpthread-stubs0_0.3-3_amd64.deb) ... Selecting previously unselected package libpthread-stubs0-dev:amd64. Unpacking libpthread-stubs0-dev:amd64 (from .../libpthread-stubs0-dev_0.3-3_amd64.deb) ... Selecting previously unselected package libpython-dev:amd64. Unpacking libpython-dev:amd64 (from .../libpython-dev_2.7.3-10ubuntu3_amd64.deb) ... 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Selecting previously unselected package mpi-default-bin. Unpacking mpi-default-bin (from .../mpi-default-bin_1.0.1_amd64.deb) ... Selecting previously unselected package libblacs-mpi1. Unpacking libblacs-mpi1 (from .../libblacs-mpi1_1.1-31ubuntu1_amd64.deb) ... Selecting previously unselected package libblacs-mpi-dev. Unpacking libblacs-mpi-dev (from .../libblacs-mpi-dev_1.1-31ubuntu1_amd64.deb) ... Selecting previously unselected package libhdf5-openmpi-7. Unpacking libhdf5-openmpi-7 (from .../libhdf5-openmpi-7_1.8.9-1~exp1ubuntu1_amd64.deb) ... Selecting previously unselected package libhdf5-openmpi-dev. Unpacking libhdf5-openmpi-dev (from .../libhdf5-openmpi-dev_1.8.9-1~exp1ubuntu1_amd64.deb) ... Selecting previously unselected package libhdf5-mpi-dev. Unpacking libhdf5-mpi-dev (from .../libhdf5-mpi-dev_1.8.9-1~exp1ubuntu1_amd64.deb) ... Selecting previously unselected package libhypre-2.8.0b. Unpacking libhypre-2.8.0b (from .../libhypre-2.8.0b_2.8.0b-1_amd64.deb) ... Selecting previously unselected package libhypre-dev. Unpacking libhypre-dev (from .../libhypre-dev_2.8.0b-1_all.deb) ... Selecting previously unselected package libscalapack-mpi1. Unpacking libscalapack-mpi1 (from .../libscalapack-mpi1_1.8.0-9_amd64.deb) ... Selecting previously unselected package libmumps-4.10.0. Unpacking libmumps-4.10.0 (from .../libmumps-4.10.0_4.10.0.dfsg-3_amd64.deb) ... Selecting previously unselected package libscalapack-mpi-dev. Unpacking libscalapack-mpi-dev (from .../libscalapack-mpi-dev_1.8.0-9_amd64.deb) ... Selecting previously unselected package libmumps-dev. Unpacking libmumps-dev (from .../libmumps-dev_4.10.0.dfsg-3_amd64.deb) ... Selecting previously unselected package libscotch-5.1. Unpacking libscotch-5.1 (from .../libscotch-5.1_5.1.12b.dfsg-2_amd64.deb) ... Selecting previously unselected package libptscotch-5.1. Unpacking libptscotch-5.1 (from .../libptscotch-5.1_5.1.12b.dfsg-2_amd64.deb) ... 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Setting up bsdmainutils (9.0.3ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.3-3) ... Building database of manual pages ... Setting up ucf (3.0025+nmu3) ... Setting up ttf-dejavu-core (2.33-3ubuntu1) ... Setting up fontconfig-config (2.10.2-0ubuntu1) ... Setting up libnettle4:amd64 (2.4-3) ... Setting up libxml2:amd64 (2.9.0+dfsg1-4) ... Setting up libarchive12:amd64 (3.0.4-2git2) ... Setting up x11-common (1:7.7+1ubuntu4) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.8-2) ... Setting up libsm6:amd64 (2:1.2.1-2) ... Setting up libxt6:amd64 (1:1.1.3-1) ... Setting up libaudio2:amd64 (1.9.3-5) ... Setting up libcroco3:amd64 (0.6.8-1) ... Setting up libcurl3:amd64 (7.28.0-3ubuntu1) ... Setting up libfreetype6:amd64 (2.4.10-0ubuntu1) ... Setting up libfontconfig1:amd64 (2.10.2-0ubuntu1) ... Setting up libunistring0:amd64 (0.9.3-5build1) ... Setting up libgettextpo0:amd64 (0.18.1.1-10ubuntu1) ... Setting up libgfortran3:amd64 (4.8-20130102-1ubuntu1) ... Setting up libglapi-mesa:amd64 (9.0.1-0ubuntu1) ... Setting up libx11-xcb1:amd64 (2:1.5.0-1) ... Setting up libxcb-glx0:amd64 (1.8.1-2) ... Setting up libxdamage1:amd64 (1:1.1.3-2build2) ... Setting up libxfixes3:amd64 (1:5.0-4ubuntu5) ... Setting up libxxf86vm1:amd64 (1:1.1.2-1) ... Setting up libgl1-mesa-glx:amd64 (9.0.1-0ubuntu1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/mesa/ld.so.conf to provide /etc/ld.so.conf.d/x86_64-linux-gnu_GL.conf (x86_64-linux-gnu_gl_conf) in auto mode Setting up libgmpxx4ldbl:amd64 (2:5.0.5+dfsg-2ubuntu3) ... Setting up libicu48:amd64 (4.8.1.1-10) ... Setting up libjpeg-turbo8:amd64 (1.2.1-0ubuntu2) ... Setting up liblcms1:amd64 (1.19.dfsg-1.2ubuntu2) ... Setting up libjpeg8:amd64 (8c-2ubuntu7) ... Setting up libmng1:amd64 (1.0.10-3build1) ... Setting up libpython2.7-minimal:amd64 (2.7.3-13ubuntu1) ... Setting up mime-support (3.52-1ubuntu2) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython2.7-stdlib:amd64 (2.7.3-13ubuntu1) ... Setting up libpython2.7:amd64 (2.7.3-13ubuntu1) ... Setting up libexpat1-dev:amd64 (2.1.0-2) ... Setting up libpython2.7-dev:amd64 (2.7.3-13ubuntu1) ... Setting up libqtcore4:amd64 (4:4.8.3+dfsg-0ubuntu3) ... Setting up libqt4-xml:amd64 (4:4.8.3+dfsg-0ubuntu3) ... Setting up libqt4-dbus:amd64 (4:4.8.3+dfsg-0ubuntu3) ... Setting up libqt4-network:amd64 (4:4.8.3+dfsg-0ubuntu3) ... Setting up libqt4-script:amd64 (4:4.8.3+dfsg-0ubuntu3) ... Setting up libqt4-sql:amd64 (4:4.8.3+dfsg-0ubuntu3) ... Setting up libqt4-xmlpatterns:amd64 (4:4.8.3+dfsg-0ubuntu3) ... Setting up fontconfig (2.10.2-0ubuntu1) ... Regenerating fonts cache... done. Setting up libjbig0:amd64 (2.0-2ubuntu1) ... Setting up libtiff5:amd64 (4.0.2-4ubuntu2) ... Setting up libxi6:amd64 (2:1.6.1-1) ... Setting up libxrender1:amd64 (1:0.9.7-1) ... Setting up libqt4-test:amd64 (4:4.8.3+dfsg-0ubuntu3) ... Setting up file (5.11-2) ... Setting up netbase (5.0ubuntu1) ... Setting up gettext-base (0.18.1.1-10ubuntu1) ... Setting up libnuma1 (2.0.8-1) ... Setting up libsigsegv2 (2.9-4ubuntu3) ... Setting up m4 (1.4.16-4ubuntu1) ... Setting up autoconf (2.69-1ubuntu1) ... Setting up autotools-dev (20120608.1) ... Setting up automake (1:1.11.6-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode Setting up html2text (1.3.2a-15build1) ... Setting up libasprintf-dev:amd64 (0.18.1.1-10ubuntu1) ... Setting up libgettextpo-dev:amd64 (0.18.1.1-10ubuntu1) ... Setting up gettext (0.18.1.1-10ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.8.0-0ubuntu10) ... Setting up debhelper (9.20120909ubuntu1) ... Setting up liburi-perl (1.60-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.69-2) ... Setting up libhtml-tree-perl (5.02-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.03-1) ... Setting up libhttp-cookies-perl (6.00-2) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.48-1) ... Setting up libio-socket-ssl-perl (1.76-2ubuntu1) ... Setting up libnet-http-perl (6.03-2) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up python2.7-minimal (2.7.3-13ubuntu1) ... Linking and byte-compiling packages for runtime python2.7... Setting up python2.7 (2.7.3-13ubuntu1) ... Setting up python-minimal (2.7.3-10ubuntu3) ... Setting up python (2.7.3-10ubuntu3) ... Setting up python-scour (0.26-3) ... Setting up libxmlrpc-core-c3 (1.16.33-3.2ubuntu1) ... Setting up emacsen-common (2.0.3) ... Setting up cmake-data (2.8.10.1-0ubuntu3) ... Install emacsen-common for emacs Install cmake-data for emacs Setting up cmake (2.8.10.1-0ubuntu3) ... Setting up libgfortran-4.8-dev:amd64 (4.8-20130102-1ubuntu1) ... Setting up gfortran-4.8 (4.8-20130102-1ubuntu1) ... Setting up gfortran (4:4.8-0ubuntu10) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode Setting up hdf5-helpers (1.8.9-1~exp1ubuntu1) ... Setting up libamd2.2.0 (1:3.4.0-3ubuntu1) ... Setting up libblas3 (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up liblapack3 (3.4.2-1~exp3) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libarmadillo3 (1:3.2.3+dfsg-1) ... Setting up libarmadillo-dev (1:3.2.3+dfsg-1) ... Setting up libarpack2 (3.1.2-2~exp1) ... Setting up libblas-dev (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up liblapack-dev (3.4.2-1~exp3) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libarpack2-dev (3.1.2-2~exp1) ... Setting up libboost1.49-dev (1.49.0-3.1ubuntu4) ... Setting up libboost-date-time1.49.0 (1.49.0-3.1ubuntu4) ... Setting up libboost-serialization1.49.0 (1.49.0-3.1ubuntu4) ... Setting up libboost-serialization1.49-dev (1.49.0-3.1ubuntu4) ... Setting up libboost-date-time1.49-dev (1.49.0-3.1ubuntu4) ... Setting up libboost-dev (1.49.0.1) ... Setting up libboost-system1.49.0 (1.49.0-3.1ubuntu4) ... Setting up libboost-filesystem1.49.0 (1.49.0-3.1ubuntu4) ... Setting up libboost-system1.49-dev (1.49.0-3.1ubuntu4) ... Setting up libboost-filesystem1.49-dev (1.49.0-3.1ubuntu4) ... Setting up libboost-filesystem-dev (1.49.0.1) ... Setting up libboost-regex1.49.0 (1.49.0-3.1ubuntu4) ... Setting up libicu-dev (4.8.1.1-10) ... Setting up libboost-regex1.49-dev (1.49.0-3.1ubuntu4) ... Setting up libboost-iostreams1.49.0 (1.49.0-3.1ubuntu4) ... Setting up libboost-iostreams1.49-dev (1.49.0-3.1ubuntu4) ... Setting up libboost-iostreams-dev (1.49.0.1) ... Setting up libboost-math1.49.0 (1.49.0-3.1ubuntu4) ... Setting up libboost-math1.49-dev (1.49.0-3.1ubuntu4) ... Setting up libboost-math-dev (1.49.0.1) ... Setting up libibverbs1 (1.1.6-1ubuntu1) ... Setting up libtorque2 (2.4.16+dfsg-1build1) ... Setting up libopenmpi1.3 (1.4.5-1ubuntu1) ... Setting up libboost-mpi1.49.0 (1.49.0-3.1ubuntu4) ... Setting up openmpi-common (1.4.5-1ubuntu1) ... Setting up libibverbs-dev (1.1.6-1ubuntu1) ... Setting up libopenmpi-dev (1.4.5-1ubuntu1) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up mpi-default-dev (1.0.1) ... Setting up libboost-mpi1.49-dev (1.49.0-3.1ubuntu4) ... Setting up libboost-mpi-dev (1.49.0.1) ... Setting up libboost-program-options1.49.0 (1.49.0-3.1ubuntu4) ... Setting up libboost-program-options1.49-dev (1.49.0-3.1ubuntu4) ... Setting up libboost-program-options-dev (1.49.0.1) ... Setting up libboost-serialization-dev (1.49.0.1) ... Setting up libboost-thread1.49.0 (1.49.0-3.1ubuntu4) ... Setting up libboost-thread1.49-dev (1.49.0-3.1ubuntu4) ... Setting up libboost-thread-dev (1.49.0.1) ... Setting up libbtf1.1.0 (1:3.4.0-3ubuntu1) ... Setting up libcamd2.2.0 (1:3.4.0-3ubuntu1) ... Setting up libccolamd2.7.1 (1:3.4.0-3ubuntu1) ... Setting up libgmp-dev:amd64 (2:5.0.5+dfsg-2ubuntu3) ... Setting up libmpfr-dev:amd64 (3.1.0-5) ... Setting up qt4-linguist-tools (4:4.8.3+dfsg-0ubuntu3) ... update-alternatives: using /usr/bin/lupdate-qt4 to provide /usr/bin/lupdate (lupdate) in auto mode update-alternatives: using /usr/bin/lrelease-qt4 to provide /usr/bin/lrelease (lrelease) in auto mode Setting up qt4-qmake (4:4.8.3+dfsg-0ubuntu3) ... update-alternatives: using /usr/bin/qmake-qt4 to provide /usr/bin/qmake (qmake) in auto mode Setting up zlib1g-dev:amd64 (1:1.2.7.dfsg-13ubuntu1) ... Setting up libcolamd2.7.1 (1:3.4.0-3ubuntu1) ... Setting up libcholmod1.7.1 (1:3.4.0-3ubuntu1) ... Setting up libcsparse2.2.3 (1:3.4.0-3ubuntu1) ... Setting up libcxsparse2.2.3 (1:3.4.0-3ubuntu1) ... Setting up libjpeg-turbo8-dev:amd64 (1.2.1-0ubuntu2) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu7) ... Setting up libjpeg-dev (8c-2ubuntu7) ... Setting up libklu1.1.0 (1:3.4.0-3ubuntu1) ... Setting up libldl2.0.1 (1:3.4.0-3ubuntu1) ... Setting up libparpack2 (3.1.2-2~exp1) ... Setting up libpthread-stubs0:amd64 (0.3-3) ... Setting up libpthread-stubs0-dev:amd64 (0.3-3) ... Setting up libpython-dev:amd64 (2.7.3-10ubuntu3) ... Setting up libumfpack5.4.0 (1:3.4.0-3ubuntu1) ... Setting up libsuitesparse-dev (1:3.4.0-3ubuntu1) ... Setting up libsuperlu3 (3.0+20070106-3) ... Setting up libsuperlu3-dev (3.0+20070106-3) ... Setting up xorg-sgml-doctools (1:1.10-1) ... Setting up x11proto-core-dev (7.0.23-1) ... Setting up libxau-dev:amd64 (1:1.0.7-1) ... Setting up libxdmcp-dev:amd64 (1:1.1.1-1) ... Setting up x11proto-input-dev (2.2-1) ... Setting up x11proto-kb-dev (1.0.6-2) ... Setting up xtrans-dev (1.2.7-1) ... Setting up libxcb1-dev:amd64 (1.8.1-2) ... Setting up libx11-dev:amd64 (2:1.5.0-1) ... Setting up libxml2-dev:amd64 (2.9.0+dfsg1-4) ... Setting up openmpi-bin (1.4.5-1ubuntu1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode Setting up pkg-config (0.26-1ubuntu2) ... Setting up python-all (2.7.3-10ubuntu3) ... Setting up python2.7-dev (2.7.3-13ubuntu1) ... Setting up python-dev (2.7.3-10ubuntu3) ... Setting up python-all-dev (2.7.3-10ubuntu3) ... Setting up python-numpy (1:1.7.0~b2-1ubuntu6) ... Setting up swig2.0 (2.0.8-1ubuntu1) ... Setting up mpi-default-bin (1.0.1) ... Setting up libblacs-mpi1 (1.1-31ubuntu1) ... Setting up libblacs-mpi-dev (1.1-31ubuntu1) ... Setting up libhdf5-openmpi-7 (1.8.9-1~exp1ubuntu1) ... Setting up libhdf5-openmpi-dev (1.8.9-1~exp1ubuntu1) ... Setting up libhdf5-mpi-dev (1.8.9-1~exp1ubuntu1) ... Setting up libhypre-2.8.0b (2.8.0b-1) ... Setting up libhypre-dev (2.8.0b-1) ... Setting up libscalapack-mpi1 (1.8.0-9) ... Setting up libmumps-4.10.0 (4.10.0.dfsg-3) ... Setting up libscalapack-mpi-dev (1.8.0-9) ... Setting up libmumps-dev (4.10.0.dfsg-3) ... Setting up libscotch-5.1 (5.1.12b.dfsg-2) ... Setting up libptscotch-5.1 (5.1.12b.dfsg-2) ... Setting up libspooles2.2 (2.2-9) ... Setting up libpetsc3.2 (3.2.dfsg-6ubuntu1) ... Setting up libspooles-dev (2.2-9) ... Setting up libscotch-dev (5.1.12b.dfsg-2) ... Setting up libptscotch-dev (5.1.12b.dfsg-2) ... Setting up libpetsc3.2-dev (3.2.dfsg-6ubuntu1) ... update-alternatives: using /usr/lib/petscdir/3.2 to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/petscdir/3.2/aclocal/math-blaslapack.m4 to provide /usr/share/aclocal/math-blaslapack.m4 (math-blaslapack.m4) in auto mode Setting up libslepc3.2 (3.2-p5-1) ... Setting up libslepc3.2-dev (3.2-p5-1) ... update-alternatives: using /usr/lib/slepcdir/3.2 to provide /usr/lib/slepc (slepc) in auto mode Setting up ufc (2.0.5-3) ... Setting up python-ufc (2.0.5-3) ... Setting up libqtgui4:amd64 (4:4.8.3+dfsg-0ubuntu3) ... Setting up libqt4-declarative:amd64 (4:4.8.3+dfsg-0ubuntu3) ... Setting up libqt4-designer:amd64 (4:4.8.3+dfsg-0ubuntu3) ... Setting up libqt4-help:amd64 (4:4.8.3+dfsg-0ubuntu3) ... Setting up libqt4-opengl:amd64 (4:4.8.3+dfsg-0ubuntu3) ... Setting up libqt4-qt3support:amd64 (4:4.8.3+dfsg-0ubuntu3) ... Setting up libqt4-scripttools:amd64 (4:4.8.3+dfsg-0ubuntu3) ... Setting up libqt4-svg:amd64 (4:4.8.3+dfsg-0ubuntu3) ... Setting up liblwp-protocol-https-perl (6.03-1) ... Setting up libwww-perl (6.04-1) ... Setting up libxml-parser-perl (2.41-1build2) ... Setting up intltool (0.50.2-2) ... Setting up dh-translations (117) ... Setting up cdbs (0.4.119ubuntu1) ... Setting up libcgal9 (4.0.2-1) ... Setting up libqt4-dev-bin (4:4.8.3+dfsg-0ubuntu3) ... update-alternatives: using /usr/bin/moc-qt4 to provide /usr/bin/moc (moc) in auto mode update-alternatives: using /usr/bin/uic-qt4 to provide /usr/bin/uic (uic) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/uic.1.gz because associated file /usr/share/man/man1/uic-qt4.1.gz (of link group uic) doesn't exist Setting up libqt4-dev (4:4.8.3+dfsg-0ubuntu3) ... Setting up libcgal-dev (4.0.2-1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.16-0ubuntu8 make_3.81-8.2ubuntu2 dpkg-dev_1.16.9ubuntu2 gcc-4.8_4.8-20130102-1ubuntu1 g++-4.8_4.8-20130102-1ubuntu1 binutils_2.23.1-0ubuntu5 libstdc++-4.8-dev_4.8-20130102-1ubuntu1 libstdc++6_4.8-20130102-1ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Fri Nov 9 19:47:33 2012 UTC using RSA key ID B5CD1ACC gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./dolfin_1.0.0-7ubuntu1.dsc dpkg-source: info: extracting dolfin in dolfin-1.0.0 dpkg-source: info: unpacking dolfin_1.0.0.orig.tar.gz dpkg-source: info: unpacking dolfin_1.0.0-7ubuntu1.debian.tar.gz dpkg-source: info: applying fix_swig_2.0.5_bug.patch dpkg-source: info: applying gcc4.7.patch dpkg-buildpackage: source package dolfin dpkg-buildpackage: source version 1.0.0-7ubuntu1 dpkg-source --before-build dolfin-1.0.0 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean test -x debian/rules dh_testroot rmdir obj-x86_64-linux-gnu rmdir: failed to remove 'obj-x86_64-linux-gnu': No such file or directory make: [cleanbuilddir] Error 1 (ignored) rm -f debian/stamp-makefile-build debian/stamp-makefile-install /usr/bin/make -C obj-x86_64-linux-gnu -k clean make: *** obj-x86_64-linux-gnu: No such file or directory. Stop. make: [makefile-clean] Error 2 (ignored) rm -rf obj-x86_64-linux-gnu dh_clean rm -f debian/copyright_newhints rm -f debian/cdbs-install-list debian/cdbs-package-list debian/stamp-copyright-check rm -rf "debian/upstream-cruft" rm -f debian/stamp-upstream-cruft rm -rf install-stamp-python2.7 debian/rules build-arch test -x debian/rules mkdir -p "obj-x86_64-linux-gnu" /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_STRIP_ARGS is a deprecated variable WARNING: copyright-check disabled - licensecheck (from devscripts package) is missing. touch debian/stamp-copyright-check touch debian/stamp-upstream-cruft cd obj-x86_64-linux-gnu && cmake /build/buildd/dolfin-1.0.0/. -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_C_COMPILER:FILEPATH="cc" -DCMAKE_CXX_COMPILER:FILEPATH="g++" -DCMAKE_C_FLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2" -DCMAKE_CXX_FLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2" -DCMAKE_SKIP_RPATH=ON -DCMAKE_VERBOSE_MAKEFILE=ON -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFIN_ENABLE_TRILINOS:BOOL=OFF -D DOLFIN_ENABLE_CGAL:BOOL=ON -D DOLFIN_ENABLE_MTL4:BOOL=OFF -D DOLFIN_ENABLE_PARMETIS:BOOL=OFF -D DOLFIN_ENABLE_UNIT_TESTS:BOOL=OFF -D SWIG_EXECUTABLE:FILEPATH=/usr/bin/swig2.0 -D DOLFIN_ENABLE_MPI:BOOL=ON -D PETSC_DIR:PATH=/usr/lib/petscdir/3.2 -D SLEPC_DIR:PATH=/usr/lib/slepcdir/3.2 -D PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2.7 -D PYTHON_LIBRARY:FILEPATH=/usr/lib/libpython2.7.so -D PYTHON_INCLUDE_DIR:PATH=/usr/include/python2.7 .. -- The C compiler identification is GNU 4.8.0 -- The CXX compiler identification is GNU 4.8.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ -- Check for working CXX compiler: /usr/bin/g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DISABLE_PEDANTIC_CHECKS -- Performing Test HAVE_DISABLE_PEDANTIC_CHECKS - Success -- Performing Test HAVE_STD -- Performing Test HAVE_STD - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Found MPI_C: /usr/lib/openmpi/lib/libmpi.so;/usr/lib/openmpi/lib/libopen-rte.so;/usr/lib/openmpi/lib/libopen-pal.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so -- Found MPI_CXX: /usr/lib/openmpi/lib/libmpi_cxx.so;/usr/lib/openmpi/lib/libmpi.so;/usr/lib/openmpi/lib/libopen-rte.so;/usr/lib/openmpi/lib/libopen-pal.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so -- Try OpenMP C flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Try OpenMP CXX flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Found OpenMP: -fopenmp -- Performing Test OPENMP_UINT_TEST_RUNS -- Performing Test OPENMP_UINT_TEST_RUNS - Success -- Boost version: 1.49.0 -- Found the following Boost libraries: -- filesystem -- program_options -- system -- thread -- iostreams -- math_tr1 -- mpi -- serialization -- UFC version: 2.0.5 -- Checking for package 'Armadillo' -- Performing Test ARMADILLO_TEST_RUNS -- Performing Test ARMADILLO_TEST_RUNS - Success -- Found Armadillo: /usr/lib/libarmadillo.so -- Found LibXml2: /usr/lib/x86_64-linux-gnu/libxml2.so (found version "2.9.0") -- Found PythonInterp: /usr/bin/python2.7 (found version "2.7.3") -- Could NOT find PythonLibs (missing: PYTHON_INCLUDE_DIRS) (found version "2.7.3") -- Checking for package 'SCOTCH-PT' -- Performing test SCOTCH_TEST_RUNS -- Performing test SCOTCH_TEST_RUNS - Success -- Found SCOTCH: /usr/lib/libptscotch.so;/usr/lib/libptscotcherr.so -- Checking for package 'AMD' -- Found AMD: /usr/lib/libamd.so -- Checking for package 'BLAS' -- Found BLAS: /usr/lib/libblas.so -- Checking for package 'UMFPACK' -- Checking for package 'AMD' -- Checking for package 'BLAS' -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- Checking for package 'BLAS' -- ParMETIS could not be found/configured. (missing: PARMETIS_LIBRARIES PARMETIS_TEST_RUNS PARMETIS_INCLUDE_DIRS) -- Checking for package 'LAPACK' -- Found LAPACK: /usr/lib/liblapack.so -- Performing Test CHOLMOD_TEST_RUNS -- Performing Test CHOLMOD_TEST_RUNS - Success -- Found CHOLMOD: /usr/lib/libcholmod.so;/usr/lib/libamd.so;/usr/lib/libcamd.so;/usr/lib/libcolamd.so;/usr/lib/libccolamd.so;/usr/lib/libblas.so;/usr/lib/liblapack.so -- Performing Test UMFPACK_TEST_RUNS -- Performing Test UMFPACK_TEST_RUNS - Success -- Found UMFPACK: /usr/include/suitesparse -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- Checking for package 'BLAS' -- ParMETIS could not be found/configured. (missing: PARMETIS_LIBRARIES PARMETIS_TEST_RUNS PARMETIS_INCLUDE_DIRS) -- Checking for package 'LAPACK' -- Checking for package 'PETSc' -- PETSC_DIR is /usr/lib/petscdir/3.2 -- PETSC_ARCH is linux-gnu-c-opt -- Found petscconf.h -- Performing Test PETSC_TEST_RUNS -- Performing Test PETSC_TEST_RUNS - Success -- PETSc test runs -- Found PETSc: /usr/lib/petscdir/3.2/linux-gnu-c-opt/lib/libpetsc.so -- Checking for package 'SLEPc' -- SLEPC_DIR is /usr/lib/slepcdir/3.2 -- Unable to find library parpack -- Performing Test SLEPC_TEST_RUNS -- Performing Test SLEPC_TEST_RUNS - Success -- SLEPc test runs -- Found SLEPc: /usr/lib/libslepc.so;/usr/lib/libarpack.so -- Checking for package 'CGAL' -- Performing Test CGAL_TEST_RUNS -- Performing Test CGAL_TEST_RUNS - Failed -- CGAL could not be found. Be sure to set CGAL_DIR (missing: CGAL_TEST_RUNS) -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.7") -- -- The following optional packages were found: -- ------------------------------------------- -- (OK) OPENMP -- (OK) MPI -- (OK) PETSC -- (OK) SLEPC -- (OK) UMFPACK -- (OK) CHOLMOD -- (OK) SCOTCH -- (OK) ZLIB -- -- The following optional packages were not enabled: -- ------------------------------------------------- -- (--) TRILINOS -- (--) MTL4 -- (--) PARMETIS -- -- The following optional packages could not be found: -- --------------------------------------------------- -- (**) CGAL -- (**) PYTHON -- (**) SPHINX -- CMake Warning at CMakeLists.txt:584 (message): Disabling generation of documentation because Sphinx is missing. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: SWIG_EXECUTABLE -- Build files have been written to: /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu /usr/bin/make -C obj-x86_64-linux-gnu make[1]: Entering directory `/build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu' /usr/bin/cmake -H/build/buildd/dolfin-1.0.0 -B/build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory `/build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu' /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/depend make[3]: Entering directory `/build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu' cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/dolfin-1.0.0 /build/buildd/dolfin-1.0.0/dolfin /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin/CMakeFiles/dolfin.dir/DependInfo.cmake --color= Scanning dependencies of target dolfin make[3]: Leaving directory `/build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu' /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/build make[3]: Entering directory `/build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 0%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/adaptivity/GenericAdaptiveVariationalSolver.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 22 [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/adaptivity/adapt.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/adaptivity/GoalFunctional.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/SpecialFacetFunction.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/adaptivity/SpecialFacetFunction.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/adaptivity/SpecialFacetFunction.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 23 [ 2%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/adaptivity/TimeSeries.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 2%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/adaptivity/adaptivesolve.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 24 [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/adaptivity/ErrorControl.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/adaptivity/Extrapolation.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 25 [ 5%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/adaptivity/AdaptiveLinearVariationalSolver.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 5%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/adaptivity/marking.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 5%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/adaptivity/AdaptiveNonlinearVariationalSolver.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 26 [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/LocalAssembler.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/adaptivity/LocalAssembler.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/adaptivity/LocalAssembler.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/ale/HarmonicSmoothing.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 27 [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/ALE.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/ale/ALE.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/ale/ALE.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/init.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/common/init.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/common/init.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/MPI.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/common/MPI.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/common/MPI.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 28 [ 8%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/timing.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/common/timing.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/common/timing.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 8%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/Variable.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/common/Variable.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/common/Variable.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 29 [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/utils.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/common/utils.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/common/utils.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/common/UniqueIdGenerator.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/defines.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/common/defines.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/common/defines.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 30 [ 11%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/common/SubSystemsManager.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 11%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/OpenMpAssembler.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/OpenMpAssembler.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/OpenMpAssembler.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 31 [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/DirichletBC.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/BoundaryCondition.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/BoundaryCondition.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/BoundaryCondition.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/FiniteElement.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 32 [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DomainAssigner.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/DomainAssigner.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/DomainAssigner.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/UFC.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/UFC.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/UFC.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 33 [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/LinearVariationalSolver.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/PointSource.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/PointSource.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/PointSource.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/LinearVariationalProblem.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 34 [ 16%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/SystemAssembler.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 16%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/solve.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/solve.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/solve.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 35 [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/AssemblerTools.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/AssemblerTools.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/AssemblerTools.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DofMap.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/DofMap.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/DofMap.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Equation.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/Equation.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/Equation.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 36 [ 19%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/DofMapBuilder.cpp /build/buildd/dolfin-1.0.0/dolfin/fem/DofMapBuilder.cpp: In static member function 'static void dolfin::DofMapBuilder::compute_ownership(dolfin::DofMapBuilder::set&, dolfin::DofMapBuilder::set&, dolfin::DofMapBuilder::set&, const dolfin::DofMap&, const set&, const dolfin::Mesh&)': /build/buildd/dolfin-1.0.0/dolfin/fem/DofMapBuilder.cpp:234:14: warning: unused variable '_owned_dim' [-Wunused-variable] const uint _owned_dim = owned_dofs.size(); ^ /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 19%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/assemble.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/assemble.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/assemble.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 37 [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Assembler.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/Assembler.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/Assembler.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/VariationalProblem.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/VariationalProblem.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/VariationalProblem.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Form.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/Form.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/Form.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 38 [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/NonlinearVariationalSolver.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/SparsityPatternBuilder.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 39 [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/PeriodicBC.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/PeriodicBC.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/PeriodicBC.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/fem/NonlinearVariationalProblem.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Constant.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/function/Constant.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/function/Constant.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 40 [ 24%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/function/GenericFunction.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 24%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/function/SpecialFunctions.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 41 [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Function.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/function/Function.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/function/Function.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/function/FunctionSpace.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Expression.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/function/Expression.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/function/Expression.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 42 [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/SubSpace.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/function/SubSpace.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/function/SubSpace.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/function/CoefficientAssigner.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 43 [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/graph/GraphColoring.cpp In file included from /build/buildd/dolfin-1.0.0/dolfin/graph/GraphColoring.cpp:28:0: /build/buildd/dolfin-1.0.0/dolfin/graph/BoostGraphInterface.h: In static member function 'static dolfin::uint dolfin::BoostGraphInterface::compute_local_vertex_coloring(const T&, dolfin::Array&)': /build/buildd/dolfin-1.0.0/dolfin/graph/BoostGraphInterface.h:55:66: warning: typedef 'vert_descriptor' locally defined but not used [-Wunused-local-typedefs] typedef typename boost::graph_traits::vertex_descriptor vert_descriptor; ^ /build/buildd/dolfin-1.0.0/dolfin/graph/BoostGraphInterface.h:56:64: warning: typedef 'vert_iterator' locally defined but not used [-Wunused-local-typedefs] typedef typename boost::graph_traits::vertex_iterator vert_iterator; ^ /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/graph/ZoltanInterface.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/BoostGraphInterface.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/graph/BoostGraphInterface.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/graph/BoostGraphInterface.cpp In file included from /build/buildd/dolfin-1.0.0/dolfin/graph/BoostGraphInterface.cpp:35:0: /build/buildd/dolfin-1.0.0/dolfin/graph/BoostGraphInterface.h: In static member function 'static dolfin::uint dolfin::BoostGraphInterface::compute_local_vertex_coloring(const T&, dolfin::Array&)': /build/buildd/dolfin-1.0.0/dolfin/graph/BoostGraphInterface.h:55:66: warning: typedef 'vert_descriptor' locally defined but not used [-Wunused-local-typedefs] typedef typename boost::graph_traits::vertex_descriptor vert_descriptor; ^ /build/buildd/dolfin-1.0.0/dolfin/graph/BoostGraphInterface.h:56:64: warning: typedef 'vert_iterator' locally defined but not used [-Wunused-local-typedefs] typedef typename boost::graph_traits::vertex_iterator vert_iterator; ^ /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 44 [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/graph/GraphBuilder.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/graph/SCOTCH.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 45 [ 30%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/MatrixRenumbering.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/graph/MatrixRenumbering.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/graph/MatrixRenumbering.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 30%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/graph/ParMETIS.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 30%] Building CXX object dolfin/CMakeFiles/dolfin.dir/intersection/PrimitiveIntersector.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/intersection/PrimitiveIntersector.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/intersection/PrimitiveIntersector.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 46 [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/intersection/IntersectionOperator.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/intersection/IntersectionOperator.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/intersection/IntersectionOperator.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/intersection/Triangle_3_Tetrahedron_3_do_intersect_SCK.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/intersection/Triangle_3_Tetrahedron_3_do_intersect_SCK.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/intersection/Triangle_3_Tetrahedron_3_do_intersect_SCK.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 47 [ 33%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLFunctionPlotData.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/io/XMLFunctionPlotData.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/io/XMLFunctionPlotData.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 33%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/GenericFile.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/io/GenericFile.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/io/GenericFile.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 33%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/File.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/io/File.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/io/File.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 48 [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/io/XMLParameters.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/pugixml.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/io/pugixml.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/io/pugixml.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 49 [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLVector.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/io/XMLVector.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/io/XMLVector.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/io/VTKWriter.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 50 [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLFile.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/io/XMLFile.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/io/XMLFile.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/io/XMLMesh.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/VTKFile.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/io/VTKFile.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/io/VTKFile.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 51 [ 38%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/RAWFile.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/io/RAWFile.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/io/RAWFile.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 38%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/xmlutils.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/io/xmlutils.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/io/xmlutils.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 52 [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/io/XMLFunctionData.cpp /build/buildd/dolfin-1.0.0/dolfin/io/XMLFunctionData.cpp: In static member function 'static void dolfin::XMLFunctionData::read(dolfin::Function&, pugi::xml_node)': /build/buildd/dolfin-1.0.0/dolfin/io/XMLFunctionData.cpp:70:16: warning: unused variable 'size' [-Wunused-variable] const uint size = xml_function_data_node.attribute("size").as_uint(); ^ /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/base64.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/io/base64.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/io/base64.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/BinaryFile.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/io/BinaryFile.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/io/BinaryFile.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 53 [ 41%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLLocalMeshSAX.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/io/XMLLocalMeshSAX.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/io/XMLLocalMeshSAX.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 41%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XYZFile.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/io/XYZFile.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/io/XYZFile.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 54 [ 42%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/SparsityPattern.cpp /build/buildd/dolfin-1.0.0/dolfin/la/SparsityPattern.cpp: In member function 'virtual void dolfin::SparsityPattern::apply()': /build/buildd/dolfin-1.0.0/dolfin/la/SparsityPattern.cpp:222:14: warning: unused variable 'num_processes' [-Wunused-variable] const uint num_processes = MPI::num_processes(); ^ /build/buildd/dolfin-1.0.0/dolfin/la/SparsityPattern.cpp:223:14: warning: unused variable 'proc_number' [-Wunused-variable] const uint proc_number = MPI::process_number(); ^ /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 42%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EpetraVector.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/EpetraVector.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/EpetraVector.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 42%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/PETScMatrix.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 55 [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EpetraFactory.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/EpetraFactory.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/EpetraFactory.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/PETScBaseMatrix.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 56 [ 44%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/uBLASKrylovSolver.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/uBLASKrylovSolver.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/uBLASKrylovSolver.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 44%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/MTL4Matrix.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/MTL4Matrix.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/MTL4Matrix.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 44%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/STLMatrix.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/STLMatrix.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/STLMatrix.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 57 [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/DefaultFactory.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LUSolver.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/LUSolver.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/LUSolver.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 58 [ 47%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/GenericMatrix.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 47%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BlockVector.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/BlockVector.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/BlockVector.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 47%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/PETScFactory.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 59 [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/ITLKrylovSolver.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/ITLKrylovSolver.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/ITLKrylovSolver.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/SLEPcEigenSolver.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 60 [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/BlockMatrix.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScUserPreconditioner.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/PETScUserPreconditioner.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/PETScUserPreconditioner.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/solve.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/solve.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/solve.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 61 [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/PETScKrylovSolver.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EpetraSparsityPattern.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/EpetraSparsityPattern.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/EpetraSparsityPattern.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 62 [ 52%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScVector.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/PETScVector.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/PETScVector.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 52%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/uBLASVector.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/uBLASVector.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/uBLASVector.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 52%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/SingularSolver.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/SingularSolver.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/SingularSolver.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 63 [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/LinearSolver.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScKrylovMatrix.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/PETScKrylovMatrix.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/PETScKrylovMatrix.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 64 [ 55%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EpetraLUSolver.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/EpetraLUSolver.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/EpetraLUSolver.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 55%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/MTL4Factory.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/MTL4Factory.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/MTL4Factory.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 55%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/PETScLUSolver.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 65 [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EpetraKrylovSolver.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/EpetraKrylovSolver.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/EpetraKrylovSolver.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/uBLASDummyPreconditioner.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/uBLASDummyPreconditioner.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/uBLASDummyPreconditioner.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 66 [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EpetraMatrix.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/EpetraMatrix.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/EpetraMatrix.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/CholmodCholeskySolver.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/CholmodCholeskySolver.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/CholmodCholeskySolver.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TrilinosPreconditioner.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/TrilinosPreconditioner.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/TrilinosPreconditioner.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 67 [ 58%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/uBLASKrylovMatrix.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/uBLASKrylovMatrix.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/uBLASKrylovMatrix.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 58%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/KrylovSolver.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 68 [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/uBLASILUPreconditioner.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/uBLASILUPreconditioner.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/uBLASILUPreconditioner.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/STLFactory.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/STLFactory.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/STLFactory.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/PETScPreconditioner.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 69 [ 61%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/UmfpackLUSolver.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/UmfpackLUSolver.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/UmfpackLUSolver.cpp /build/buildd/dolfin-1.0.0/dolfin/la/UmfpackLUSolver.cpp: In member function 'void dolfin::UmfpackLUSolver::symbolic_factorize()': /build/buildd/dolfin-1.0.0/dolfin/la/UmfpackLUSolver.cpp:193:22: warning: unused variable 'nnz' [-Wunused-variable] const uint nnz = boost::tuples::get<3>(data); ^ /build/buildd/dolfin-1.0.0/dolfin/la/UmfpackLUSolver.cpp: In member function 'void dolfin::UmfpackLUSolver::numeric_factorize()': /build/buildd/dolfin-1.0.0/dolfin/la/UmfpackLUSolver.cpp:221:22: warning: unused variable 'nnz' [-Wunused-variable] const uint nnz = boost::tuples::get<3>(data); ^ /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 61%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/MTL4Vector.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/la/MTL4Vector.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/la/MTL4Vector.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 70 [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Logger.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/log/Logger.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/log/Logger.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/LogManager.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/log/LogManager.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/log/LogManager.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/LogStream.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/log/LogStream.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/log/LogStream.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 71 [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Table.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/log/Table.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/log/Table.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Progress.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/log/Progress.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/log/Progress.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 72 [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/log.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/log/log.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/log/log.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Event.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/log/Event.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/log/Event.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/Lagrange.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/math/Lagrange.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/math/Lagrange.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 73 [ 66%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/basic.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/math/basic.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/math/basic.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 66%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/Legendre.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/math/Legendre.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/math/Legendre.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 74 [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/Mesh.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshConnectivity.cpp /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshConnectivity.cpp: In copy constructor 'dolfin::MeshConnectivity::MeshConnectivity(const dolfin::MeshConnectivity&)': /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshConnectivity.cpp:33:1: warning: 'dolfin::MeshConnectivity::d0' is initialized with itself [-Winit-self] MeshConnectivity::MeshConnectivity(const MeshConnectivity& connectivity) ^ /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshConnectivity.cpp:33:1: warning: 'dolfin::MeshConnectivity::d1' is initialized with itself [-Winit-self] /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 75 [ 69%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/UnitSphere.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/UnitSphere.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/UnitSphere.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 69%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Rectangle.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/Rectangle.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/Rectangle.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 69%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/SubMesh.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 76 [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/DynamicMeshEditor.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/UnitCircle.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/UnitCircle.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/UnitCircle.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 77 [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/FacetCell.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshRenumbering.cpp /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshRenumbering.cpp: In static member function 'static dolfin::Mesh dolfin::MeshRenumbering::renumber_by_color(const dolfin::Mesh&, std::vector)': /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshRenumbering.cpp:110:29: warning: unused variable 'colors' [-Wunused-variable] const MeshFunction& colors = mesh_coloring->second.first; ^ /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshRenumbering.cpp:139:42: warning: variable 'insert' set but not used [-Wunused-but-set-variable] std::pair insert ^ /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshRenumbering.cpp: In static member function 'static void dolfin::MeshRenumbering::compute_renumbering(const dolfin::Mesh&, const std::vector&, std::vector&, std::vector&)': /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshRenumbering.cpp:156:14: warning: unused variable 'num_cells' [-Wunused-variable] const uint num_cells = mesh.num_cells(); ^ /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshRenumbering.cpp:188:29: warning: unused variable 'colors_old' [-Wunused-variable] const MeshFunction& colors_old = mesh_coloring->second.first; ^ /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshColoring.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 78 [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/TopologyComputation.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/ParallelData.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/ParallelData.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/ParallelData.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 79 [ 74%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshFunction.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 74%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Point.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/Point.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/Point.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 74%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshPartitioning.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 80 [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshDomains.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshHierarchy.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 81 [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/PointCell.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshGeometry.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/BoundaryMesh.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 82 [ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/UnitTriangle.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/UnitTriangle.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/UnitTriangle.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshData.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 83 [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshOrdering.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/LocalMeshData.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/TriangleCell.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 84 [ 80%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/IntervalCell.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 80%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshTopology.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 85 [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/CellType.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/CellType.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/CellType.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshEditor.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/BoundaryComputation.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 86 [ 83%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshDistributed.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/MeshDistributed.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshDistributed.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 83%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/UnitCube.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/UnitCube.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/UnitCube.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 87 [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/UnitTetrahedron.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/UnitTetrahedron.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/UnitTetrahedron.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshHierarchyAlgorithms.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/MeshHierarchyAlgorithms.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshHierarchyAlgorithms.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshSmoothing.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 88 [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Facet.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/Facet.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/Facet.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/UnitInterval.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/UnitInterval.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/UnitInterval.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 89 [ 87%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Edge.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/Edge.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/Edge.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 87%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/MeshEntity.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 87%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/SubDomain.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 90 [ 88%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/UnitSquare.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/UnitSquare.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/UnitSquare.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 88%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Face.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/Face.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/Face.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 91 [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/TetrahedronCell.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Interval.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/Interval.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/Interval.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Box.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/mesh/Box.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/mesh/Box.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 92 [ 91%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/nls/NewtonSolver.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 91%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/parameter/Parameter.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 93 [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/parameter/GlobalParameters.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/parameter/Parameters.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/plot/plot.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/plot/plot.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/plot/plot.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 94 [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/plot/FunctionPlotData.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/plot/FunctionPlotData.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/plot/FunctionPlotData.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/quadrature/LobattoQuadrature.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/quadrature/LobattoQuadrature.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/quadrature/LobattoQuadrature.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 95 [ 94%] Building CXX object dolfin/CMakeFiles/dolfin.dir/quadrature/BarycenterQuadrature.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/quadrature/BarycenterQuadrature.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/quadrature/BarycenterQuadrature.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 94%] Building CXX object dolfin/CMakeFiles/dolfin.dir/quadrature/Quadrature.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/quadrature/Quadrature.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/quadrature/Quadrature.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 94%] Building CXX object dolfin/CMakeFiles/dolfin.dir/quadrature/GaussianQuadrature.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/quadrature/GaussianQuadrature.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/quadrature/GaussianQuadrature.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 96 [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/quadrature/GaussQuadrature.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/quadrature/GaussQuadrature.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/quadrature/GaussQuadrature.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/quadrature/RadauQuadrature.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/quadrature/RadauQuadrature.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/quadrature/RadauQuadrature.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 97 [ 97%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/refinement/RegularCutRefinement.cpp /build/buildd/dolfin-1.0.0/dolfin/refinement/RegularCutRefinement.cpp: In static member function 'static void dolfin::RegularCutRefinement::refine_marked(dolfin::Mesh&, const dolfin::Mesh&, const std::vector&, const dolfin::IndexSet&)': /build/buildd/dolfin-1.0.0/dolfin/refinement/RegularCutRefinement.cpp:295:19: warning: unused variable 'twin_marker' [-Wunused-variable] const int twin_marker = refinement_markers[bisection_twin]; ^ /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 97%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/BisectionRefinement.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/refinement/BisectionRefinement.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/refinement/BisectionRefinement.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 97%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/refine.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/refinement/refine.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/refinement/refine.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 98 [ 98%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/LocalMeshRefinement.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/refinement/LocalMeshRefinement.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/refinement/LocalMeshRefinement.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [ 98%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/UniformMeshRefinement.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/refinement/UniformMeshRefinement.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/refinement/UniformMeshRefinement.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 99 [100%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/refinement/LocalMeshCoarsening.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles [100%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/RivaraRefinement.cpp.o cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/g++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_VERSION=\"1.0.0\" -DHAS_CHOLMOD -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DMPICH_IGNORE_CXX_SEEK -Ddolfin_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -fPIC -I/build/buildd/dolfin-1.0.0 -I/usr/include/libxml2 -I/usr/lib/slepcdir/3.2 -I/usr/lib/slepcdir/3.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.2/include -I/usr/lib/petscdir/3.2/include -I/usr/lib/petscdir/3.2/linux-gnu-c-opt/include -I/usr/include/scotch -I/usr/include/spooles -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -o CMakeFiles/dolfin.dir/refinement/RivaraRefinement.cpp.o -c /build/buildd/dolfin-1.0.0/dolfin/refinement/RivaraRefinement.cpp Linking CXX shared library libdolfin.so cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin && /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfin.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -DNDEBUG -shared -Wl,-soname,libdolfin.so.1.0 -o libdolfin.so.1.0.0 CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o 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make[3]: Leaving directory `/build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 [100%] Built target dolfin make[2]: Leaving directory `/build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory `/build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu' touch debian/stamp-makefile-build DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/fakeroot debian/rules binary-arch test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "obj-x86_64-linux-gnu" /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_STRIP_ARGS is a deprecated variable DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/make -C obj-x86_64-linux-gnu install DESTDIR=/build/buildd/dolfin-1.0.0/debian/tmp/ make[1]: Entering directory `/build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu' /usr/bin/cmake -H/build/buildd/dolfin-1.0.0 -B/build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory `/build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu' /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/depend make[3]: Entering directory `/build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu' cd /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/dolfin-1.0.0 /build/buildd/dolfin-1.0.0/dolfin /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/dolfin/CMakeFiles/dolfin.dir/DependInfo.cmake --color= make[3]: Leaving directory `/build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu' /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/build make[3]: Entering directory `/build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for `dolfin/CMakeFiles/dolfin.dir/build'. make[3]: Leaving directory `/build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 [100%] Built target dolfin make[2]: Leaving directory `/build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory `/build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for `preinstall'. make[2]: Leaving directory `/build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/lib/python2.7/dist-packages/dolfin_utils -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/lib/python2.7/dist-packages/dolfin_utils/documentation -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/lib/python2.7/dist-packages/dolfin_utils/documentation/extractdocumentation.py -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/lib/python2.7/dist-packages/dolfin_utils/documentation/docstringutils.py -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/lib/python2.7/dist-packages/dolfin_utils/documentation/generatecpprst.py -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/lib/python2.7/dist-packages/dolfin_utils/documentation/generatepythonrst.py -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/lib/python2.7/dist-packages/dolfin_utils/documentation/__init__.py -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/lib/python2.7/dist-packages/dolfin_utils/documentation/indextemplates.py -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/lib/python2.7/dist-packages/dolfin_utils/pjobs -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/lib/python2.7/dist-packages/dolfin_utils/pjobs/torque.py -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/lib/python2.7/dist-packages/dolfin_utils/pjobs/sge.py -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/lib/python2.7/dist-packages/dolfin_utils/pjobs/__init__.py -- Installing: 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/build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/EpetraLUSolver.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/PETScObject.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/UmfpackLUSolver.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/ITLKrylovSolver.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/GenericLinearSolver.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/uBLASILUPreconditioner.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/mtl4.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/uBLASDummyPreconditioner.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/GenericTensor.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/PETScKrylovMatrix.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/SingularSolver.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/LUSolver.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/solve.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/CholmodCholeskySolver.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/GenericVector.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/EpetraFactory.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/EpetraVector.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/uBLASFactory.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/dolfin_la.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/uBLASPreconditioner.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/SLEPcEigenSolver.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/MTL4Factory.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/Matrix.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/DefaultFactory.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/MTL4Vector.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/PETScLUSolver.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/BlockMatrix.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/EpetraKrylovSolver.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/LinearAlgebraFactory.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/uBLASVector.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/uBLASKrylovSolver.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/ublas.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/Vector.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/uBLASSparseMatrix.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/SparsityPattern.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/PETScFactory.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/PETScVector.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/la/EpetraSparsityPattern.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/log/Logger.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/log/LogManager.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/log/dolfin_log.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/log/LogLevel.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/log/log.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/log/Progress.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/log/Event.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/log/Table.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/log/LogStream.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/math/Legendre.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/math/dolfin_math.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/math/basic.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/math/Lagrange.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/UnitTriangle.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/MeshRenumbering.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/UnitTetrahedron.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/IntervalCell.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/MeshGeometry.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/MeshDistributed.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/MeshEntity.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/PointCell.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/MeshOrdering.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/MeshSmoothing.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/TopologyComputation.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/MeshColoring.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/MeshValueCollection.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/MeshData.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/dolfin_mesh.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/TetrahedronCell.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/MeshTopology.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/UnitSquare.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/UnitSphere.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/MeshDomains.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/ParallelData.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/MeshHierarchy.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/Rectangle.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/Facet.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/SubMesh.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/UnitCircle.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/MeshPartitioning.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/MeshEntityIterator.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/CellType.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/LocalMeshValueCollection.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/DynamicMeshEditor.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/BoundaryMesh.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/Cell.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/MeshHierarchyAlgorithms.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/Face.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/Edge.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/Point.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/UnitCube.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/Vertex.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/LocalMeshData.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/Box.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/Interval.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/DomainBoundary.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/MeshConnectivity.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/FacetCell.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/MeshEditor.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/MeshFunction.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/SubDomain.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/SubsetIterator.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/UnitInterval.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/Mesh.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/TriangleCell.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/mesh/BoundaryComputation.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/nls/NonlinearProblem.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/nls/dolfin_nls.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/nls/NewtonSolver.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/parameter/Parameters.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/parameter/dolfin_parameter.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/parameter/GlobalParameters.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/parameter/Parameter.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/plot/dolfin_plot.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/plot/plot.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/plot/FunctionPlotData.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/quadrature/GaussianQuadrature.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/quadrature/LobattoQuadrature.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/quadrature/RadauQuadrature.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/quadrature/GaussQuadrature.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/quadrature/dolfin_quadrature.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/quadrature/BarycenterQuadrature.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/quadrature/Quadrature.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/refinement/BisectionRefinement.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/refinement/refine.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/refinement/dolfin_refinement.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/refinement/RegularCutRefinement.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/refinement/UniformMeshRefinement.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/refinement/LocalMeshRefinement.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/refinement/LocalMeshCoarsening.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/include/dolfin/refinement/RivaraRefinement.h -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/lib/libdolfin.so.1.0.0 -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/lib/libdolfin.so.1.0 -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/lib/libdolfin.so -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/lib/pkgconfig/dolfin.pc -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/share/dolfin/cmake/dolfin-config.cmake -- Installing: /build/buildd/dolfin-1.0.0/debian/tmp/usr/share/dolfin/cmake/dolfin-config-version.cmake ---------------------------------------------------------------------------- DOLFIN has now been installed in /usr and the demo programs have been installed in /usr/share/dolfin/demo Before rushing off to try the demos, don't forget to update your environment variables. This can be done easily using the helper file 'dolfin.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/share/dolfin/dolfin.conf For future reference, we recommend that you add this command to your configuration (.bashrc, .profile or similar). ---------------------------------------------------------------------------- make[1]: Leaving directory `/build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu' touch debian/stamp-makefile-install Adding cdbs dependencies to debian/libdolfin1.0-dev.substvars dh_installdirs -plibdolfin1.0-dev Adding cdbs dependencies to debian/libdolfin1.0.substvars dh_installdirs -plibdolfin1.0 Adding cdbs dependencies to debian/libdolfin1.0-dbg.substvars dh_installdirs -plibdolfin1.0-dbg Adding cdbs dependencies to debian/python-dolfin.substvars dh_installdirs -ppython-dolfin cd obj-x86_64-linux-gnu && rm CMakeCache.txt && \ cmake -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_C_COMPILER:FILEPATH="cc" -DCMAKE_CXX_COMPILER:FILEPATH="g++" -DCMAKE_C_FLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2" -DCMAKE_CXX_FLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2" -DCMAKE_SKIP_RPATH=ON -DCMAKE_VERBOSE_MAKEFILE=ON -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFIN_ENABLE_TRILINOS:BOOL=OFF -D DOLFIN_ENABLE_CGAL:BOOL=ON -D DOLFIN_ENABLE_MTL4:BOOL=OFF -D DOLFIN_ENABLE_PARMETIS:BOOL=OFF -D DOLFIN_ENABLE_UNIT_TESTS:BOOL=OFF -D SWIG_EXECUTABLE:FILEPATH=/usr/bin/swig2.0 -D DOLFIN_ENABLE_MPI:BOOL=ON -D PETSC_DIR:PATH=/usr/lib/petscdir/3.2 -D SLEPC_DIR:PATH=/usr/lib/slepcdir/3.2 -D PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2.7 -D PYTHON_LIBRARY:FILEPATH=/usr/lib/libpython2.7.so -D PYTHON_INCLUDE_DIR:PATH=/usr/include/python2.7 .. \ -D PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2.7 \ -D PYTHON_LIBRARY:FILEPATH=/usr/lib/libpython2.7.so \ -D PYTHON_INCLUDE_DIR:PATH=/usr/include/python2.7 \ .. -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DISABLE_PEDANTIC_CHECKS -- Performing Test HAVE_DISABLE_PEDANTIC_CHECKS - Success -- Performing Test HAVE_STD -- Performing Test HAVE_STD - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Found MPI_C: /usr/lib/openmpi/lib/libmpi.so;/usr/lib/openmpi/lib/libopen-rte.so;/usr/lib/openmpi/lib/libopen-pal.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so -- Found MPI_CXX: /usr/lib/openmpi/lib/libmpi_cxx.so;/usr/lib/openmpi/lib/libmpi.so;/usr/lib/openmpi/lib/libopen-rte.so;/usr/lib/openmpi/lib/libopen-pal.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so -- Try OpenMP C flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Try OpenMP CXX flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Found OpenMP: -fopenmp -- Performing Test OPENMP_UINT_TEST_RUNS -- Performing Test OPENMP_UINT_TEST_RUNS - Success -- Boost version: 1.49.0 -- Found the following Boost libraries: -- filesystem -- program_options -- system -- thread -- iostreams -- math_tr1 -- mpi -- serialization -- UFC version: 2.0.5 -- Checking for package 'Armadillo' -- Performing Test ARMADILLO_TEST_RUNS -- Performing Test ARMADILLO_TEST_RUNS - Success -- Found Armadillo: /usr/lib/libarmadillo.so -- Found LibXml2: /usr/lib/x86_64-linux-gnu/libxml2.so (found version "2.9.0") -- Found PythonInterp: /usr/bin/python2.7 (found version "2.7.3") -- Could NOT find PythonLibs (missing: PYTHON_INCLUDE_DIRS) (found version "2.7.3") -- Checking for package 'SCOTCH-PT' -- Performing test SCOTCH_TEST_RUNS -- Performing test SCOTCH_TEST_RUNS - Success -- Found SCOTCH: /usr/lib/libptscotch.so;/usr/lib/libptscotcherr.so -- Checking for package 'AMD' -- Found AMD: /usr/lib/libamd.so -- Checking for package 'BLAS' -- Found BLAS: /usr/lib/libblas.so -- Checking for package 'UMFPACK' -- Checking for package 'AMD' -- Checking for package 'BLAS' -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- Checking for package 'BLAS' -- ParMETIS could not be found/configured. (missing: PARMETIS_LIBRARIES PARMETIS_TEST_RUNS PARMETIS_INCLUDE_DIRS) -- Checking for package 'LAPACK' -- Found LAPACK: /usr/lib/liblapack.so -- Performing Test CHOLMOD_TEST_RUNS -- Performing Test CHOLMOD_TEST_RUNS - Success -- Found CHOLMOD: /usr/lib/libcholmod.so;/usr/lib/libamd.so;/usr/lib/libcamd.so;/usr/lib/libcolamd.so;/usr/lib/libccolamd.so;/usr/lib/libblas.so;/usr/lib/liblapack.so -- Performing Test UMFPACK_TEST_RUNS -- Performing Test UMFPACK_TEST_RUNS - Success -- Found UMFPACK: /usr/include/suitesparse -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- Checking for package 'BLAS' -- ParMETIS could not be found/configured. (missing: PARMETIS_LIBRARIES PARMETIS_TEST_RUNS PARMETIS_INCLUDE_DIRS) -- Checking for package 'LAPACK' -- Checking for package 'PETSc' -- PETSC_DIR is /usr/lib/petscdir/3.2 -- PETSC_ARCH is linux-gnu-c-opt -- Found petscconf.h -- Performing Test PETSC_TEST_RUNS -- Performing Test PETSC_TEST_RUNS - Success -- PETSc test runs -- Found PETSc: /usr/lib/petscdir/3.2/linux-gnu-c-opt/lib/libpetsc.so -- Checking for package 'SLEPc' -- SLEPC_DIR is /usr/lib/slepcdir/3.2 -- Unable to find library parpack -- Performing Test SLEPC_TEST_RUNS -- Performing Test SLEPC_TEST_RUNS - Success -- SLEPc test runs -- Found SLEPc: /usr/lib/libslepc.so;/usr/lib/libarpack.so -- Checking for package 'CGAL' -- Performing Test CGAL_TEST_RUNS -- Performing Test CGAL_TEST_RUNS - Failed -- CGAL could not be found. Be sure to set CGAL_DIR (missing: CGAL_TEST_RUNS) -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.7") -- -- The following optional packages were found: -- ------------------------------------------- -- (OK) OPENMP -- (OK) MPI -- (OK) PETSC -- (OK) SLEPC -- (OK) UMFPACK -- (OK) CHOLMOD -- (OK) SCOTCH -- (OK) ZLIB -- -- The following optional packages were not enabled: -- ------------------------------------------------- -- (--) TRILINOS -- (--) MTL4 -- (--) PARMETIS -- -- The following optional packages could not be found: -- --------------------------------------------------- -- (**) CGAL -- (**) PYTHON -- (**) SPHINX -- CMake Warning at CMakeLists.txt:584 (message): Disabling generation of documentation because Sphinx is missing. -- Configuring done You have changed variables that require your cache to be deleted. Configure will be re-run and you may have to reset some variables. The following variables have changed: CMAKE_C_COMPILER= cc CMAKE_CXX_COMPILER= g++ -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DISABLE_PEDANTIC_CHECKS -- Performing Test HAVE_DISABLE_PEDANTIC_CHECKS - Success -- Performing Test HAVE_STD -- Performing Test HAVE_STD - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Found MPI_C: /usr/lib/openmpi/lib/libmpi.so;/usr/lib/openmpi/lib/libopen-rte.so;/usr/lib/openmpi/lib/libopen-pal.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so -- Found MPI_CXX: /usr/lib/openmpi/lib/libmpi_cxx.so;/usr/lib/openmpi/lib/libmpi.so;/usr/lib/openmpi/lib/libopen-rte.so;/usr/lib/openmpi/lib/libopen-pal.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so -- Try OpenMP C flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Try OpenMP CXX flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Found OpenMP: -fopenmp -- Performing Test OPENMP_UINT_TEST_RUNS -- Performing Test OPENMP_UINT_TEST_RUNS - Success -- Boost version: 1.49.0 -- Found the following Boost libraries: -- filesystem -- program_options -- system -- thread -- iostreams -- math_tr1 -- mpi -- serialization -- UFC version: 2.0.5 -- Checking for package 'Armadillo' -- Performing Test ARMADILLO_TEST_RUNS -- Performing Test ARMADILLO_TEST_RUNS - Success -- Found Armadillo: /usr/lib/libarmadillo.so -- Found LibXml2: /usr/lib/x86_64-linux-gnu/libxml2.so (found version "2.9.0") -- Found PythonInterp: /usr/bin/python (found version "2.7.3") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython2.7.so (found version "2.7.3") -- NumPy headers found -- Found SWIG: /usr/bin/swig2.0 (found version "2.0.8") -- ParMETIS could not be found/configured. (missing: PARMETIS_LIBRARIES PARMETIS_TEST_RUNS PARMETIS_INCLUDE_DIRS) -- Checking for package 'SCOTCH-PT' -- Performing test SCOTCH_TEST_RUNS -- Performing test SCOTCH_TEST_RUNS - Success -- Found SCOTCH: /usr/lib/libptscotch.so;/usr/lib/libptscotcherr.so -- Checking for package 'AMD' -- Found AMD: /usr/lib/libamd.so -- Checking for package 'BLAS' -- Found BLAS: /usr/lib/libblas.so -- Checking for package 'UMFPACK' -- Checking for package 'AMD' -- Checking for package 'BLAS' -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- Checking for package 'BLAS' -- ParMETIS could not be found/configured. (missing: PARMETIS_LIBRARIES PARMETIS_TEST_RUNS PARMETIS_INCLUDE_DIRS) -- Checking for package 'LAPACK' -- Found LAPACK: /usr/lib/liblapack.so -- Performing Test CHOLMOD_TEST_RUNS -- Performing Test CHOLMOD_TEST_RUNS - Success -- Found CHOLMOD: /usr/lib/libcholmod.so;/usr/lib/libamd.so;/usr/lib/libcamd.so;/usr/lib/libcolamd.so;/usr/lib/libccolamd.so;/usr/lib/libblas.so;/usr/lib/liblapack.so -- Performing Test UMFPACK_TEST_RUNS -- Performing Test UMFPACK_TEST_RUNS - Success -- Found UMFPACK: /usr/include/suitesparse -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- Checking for package 'BLAS' -- ParMETIS could not be found/configured. (missing: PARMETIS_LIBRARIES PARMETIS_TEST_RUNS PARMETIS_INCLUDE_DIRS) -- Checking for package 'LAPACK' -- Checking for Trilinos -- Trilinos could not be found -- Checking for package 'MTL4' -- Checking for package 'BLAS' -- MTL4 could not be found. Be sure to set MTL4_DIR (missing: MTL4_INCLUDE_DIRS MTL4_TEST_RUNS) -- Checking for package 'PETSc' -- PETSC_DIR is PETSC_DIR-NOTFOUND -- PETSC_ARCH is empty -- Unable to find petscconf.h -- PETSc could not be found. Be sure to set PETSC_DIR and PETSC_ARCH. (missing: PETSC_LIBRARIES PETSC_DIR PETSC_INCLUDE_DIRS PETSC_TEST_RUNS) -- Checking for package 'CGAL' -- Performing Test CGAL_TEST_RUNS -- Performing Test CGAL_TEST_RUNS - Success -- Found CGAL: /usr/lib/libCGAL.so;/usr/lib/x86_64-linux-gnu/libgmpxx.so;/usr/lib/x86_64-linux-gnu/libmpfr.so;/usr/lib/x86_64-linux-gnu/libgmp.so;/usr/lib/libboost_thread-mt.so -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.7") -- Checking for package 'CPPUNIT' -- CPPUNIT could not be found. Be sure to set CPPUNIT_DIR. (missing: CPPUNIT_LIBRARIES CPPUNIT_INCLUDE_DIRS) -- Checking for package 'Sphinx' -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE SPHINX_VERSION_OK) (Required is at least version "1.0.7") -- -- The following optional packages were found: -- ------------------------------------------- -- (OK) OPENMP -- (OK) MPI -- (OK) UMFPACK -- (OK) CHOLMOD -- (OK) SCOTCH -- (OK) CGAL -- (OK) ZLIB -- (OK) PYTHON -- -- The following optional packages could not be found: -- --------------------------------------------------- -- (**) PETSC -- (**) SLEPC -- (**) TRILINOS -- (**) MTL4 -- (**) PARMETIS -- (**) SPHINX -- CMake Warning at dolfin/CMakeLists.txt:227 (message): UFC compiled with different version of SWIG. Please install SWIG version 2.0.7 or recompile UFC with present SWIG. CMake Warning at CMakeLists.txt:584 (message): Disabling generation of documentation because Sphinx is missing. -- Configuring done You have changed variables that require your cache to be deleted. Configure will be re-run and you may have to reset some variables. The following variables have changed: CMAKE_C_COMPILER= cc CMAKE_CXX_COMPILER= g++ -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DISABLE_PEDANTIC_CHECKS -- Performing Test HAVE_DISABLE_PEDANTIC_CHECKS - Success -- Performing Test HAVE_STD -- Performing Test HAVE_STD - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Found MPI_C: /usr/lib/openmpi/lib/libmpi.so;/usr/lib/openmpi/lib/libopen-rte.so;/usr/lib/openmpi/lib/libopen-pal.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so -- Found MPI_CXX: /usr/lib/openmpi/lib/libmpi_cxx.so;/usr/lib/openmpi/lib/libmpi.so;/usr/lib/openmpi/lib/libopen-rte.so;/usr/lib/openmpi/lib/libopen-pal.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libnsl.so;/usr/lib/x86_64-linux-gnu/libutil.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/libdl.so -- Try OpenMP C flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Try OpenMP CXX flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Found OpenMP: -fopenmp -- Performing Test OPENMP_UINT_TEST_RUNS -- Performing Test OPENMP_UINT_TEST_RUNS - Success -- Boost version: 1.49.0 -- Found the following Boost libraries: -- filesystem -- program_options -- system -- thread -- iostreams -- math_tr1 -- mpi -- serialization -- UFC version: 2.0.5 -- Checking for package 'Armadillo' -- Performing Test ARMADILLO_TEST_RUNS -- Performing Test ARMADILLO_TEST_RUNS - Success -- Found Armadillo: /usr/lib/libarmadillo.so -- Found LibXml2: /usr/lib/x86_64-linux-gnu/libxml2.so (found version "2.9.0") -- Found PythonInterp: /usr/bin/python (found version "2.7.3") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython2.7.so (found version "2.7.3") -- NumPy headers found -- Found SWIG: /usr/bin/swig2.0 (found version "2.0.8") -- ParMETIS could not be found/configured. (missing: PARMETIS_LIBRARIES PARMETIS_TEST_RUNS PARMETIS_INCLUDE_DIRS) -- Checking for package 'SCOTCH-PT' -- Performing test SCOTCH_TEST_RUNS -- Performing test SCOTCH_TEST_RUNS - Success -- Found SCOTCH: /usr/lib/libptscotch.so;/usr/lib/libptscotcherr.so -- Checking for package 'AMD' -- Found AMD: /usr/lib/libamd.so -- Checking for package 'BLAS' -- Found BLAS: /usr/lib/libblas.so -- Checking for package 'UMFPACK' -- Checking for package 'AMD' -- Checking for package 'BLAS' -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- Checking for package 'BLAS' -- ParMETIS could not be found/configured. (missing: PARMETIS_LIBRARIES PARMETIS_TEST_RUNS PARMETIS_INCLUDE_DIRS) -- Checking for package 'LAPACK' -- Found LAPACK: /usr/lib/liblapack.so -- Performing Test CHOLMOD_TEST_RUNS -- Performing Test CHOLMOD_TEST_RUNS - Success -- Found CHOLMOD: /usr/lib/libcholmod.so;/usr/lib/libamd.so;/usr/lib/libcamd.so;/usr/lib/libcolamd.so;/usr/lib/libccolamd.so;/usr/lib/libblas.so;/usr/lib/liblapack.so -- Performing Test UMFPACK_TEST_RUNS -- Performing Test UMFPACK_TEST_RUNS - Success -- Found UMFPACK: /usr/include/suitesparse -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- Checking for package 'BLAS' -- ParMETIS could not be found/configured. (missing: PARMETIS_LIBRARIES PARMETIS_TEST_RUNS PARMETIS_INCLUDE_DIRS) -- Checking for package 'LAPACK' -- Checking for Trilinos CMake Error: An attempt was made to access a variable: TRILINOS_DIR that has not been defined. This variable is created by the FIND_PACKAGE command. CMake version 1.6 always converted the variable name to upper-case, but this behavior is no longer the case. To fix this you might need to set the cache value of CMAKE_BACKWARDS_COMPATIBILITY to 1.6 or less. If you are writing a CMake listfile, you should change the variable reference to use the case of the argument to FIND_PACKAGE. -- Trilinos could not be found -- Checking for package 'MTL4' -- Checking for package 'BLAS' -- MTL4 could not be found. Be sure to set MTL4_DIR (missing: MTL4_INCLUDE_DIRS MTL4_TEST_RUNS) -- Checking for package 'PETSc' -- PETSC_DIR is PETSC_DIR-NOTFOUND -- PETSC_ARCH is empty -- Unable to find petscconf.h -- PETSc could not be found. Be sure to set PETSC_DIR and PETSC_ARCH. (missing: PETSC_LIBRARIES PETSC_DIR PETSC_INCLUDE_DIRS PETSC_TEST_RUNS) -- Checking for package 'CGAL' -- Performing Test CGAL_TEST_RUNS -- Performing Test CGAL_TEST_RUNS - Success -- Found CGAL: /usr/lib/libCGAL.so;/usr/lib/x86_64-linux-gnu/libgmpxx.so;/usr/lib/x86_64-linux-gnu/libmpfr.so;/usr/lib/x86_64-linux-gnu/libgmp.so;/usr/lib/libboost_thread-mt.so -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.7") -- Checking for package 'CPPUNIT' -- CPPUNIT could not be found. Be sure to set CPPUNIT_DIR. (missing: CPPUNIT_LIBRARIES CPPUNIT_INCLUDE_DIRS) -- Checking for package 'Sphinx' -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE SPHINX_VERSION_OK) (Required is at least version "1.0.7") -- -- The following optional packages were found: -- ------------------------------------------- -- (OK) OPENMP -- (OK) MPI -- (OK) UMFPACK -- (OK) CHOLMOD -- (OK) SCOTCH -- (OK) CGAL -- (OK) ZLIB -- (OK) PYTHON -- -- The following optional packages could not be found: -- --------------------------------------------------- -- (**) PETSC -- (**) SLEPC -- (**) TRILINOS -- (**) MTL4 -- (**) PARMETIS -- (**) SPHINX -- CMake Warning at dolfin/CMakeLists.txt:227 (message): UFC compiled with different version of SWIG. Please install SWIG version 2.0.7 or recompile UFC with present SWIG. CMake Warning at CMakeLists.txt:584 (message): Disabling generation of documentation because Sphinx is missing. -- Configuring incomplete, errors occurred! You have changed variables that require your cache to be deleted. Configure will be re-run and you may have to reset some variables. The following variables have changed: CMAKE_C_COMPILER= cc CMAKE_CXX_COMPILER= g++ -- Generating done -- Build files have been written to: /build/buildd/dolfin-1.0.0/obj-x86_64-linux-gnu make: *** [install-stamp-python2.7] Error 1 dpkg-buildpackage: error: /usr/bin/fakeroot debian/rules binary-arch gave error exit status 2 ****************************************************************************** Build finished at 20130104-0257 FAILED [dpkg-buildpackage died] ****************************************************************************** Finished at 20130104-0257 Build needed 00:11:54, 402680k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '32593683fd63c9e9ad3ca732d20591ceb4715a39'] Scanning for processes to kill in build /home/buildd/build-32593683fd63c9e9ad3ca732d20591ceb4715a39/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '32593683fd63c9e9ad3ca732d20591ceb4715a39'] Unmounting chroot for build 32593683fd63c9e9ad3ca732d20591ceb4715a39... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '32593683fd63c9e9ad3ca732d20591ceb4715a39'] Removing build 32593683fd63c9e9ad3ca732d20591ceb4715a39