RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux kishi05 3.2.0-51-highbank #77-Ubuntu SMP PREEMPT Thu Jul 25 04:09:51 UTC 2013 armv7l Buildd toolchain package versions: launchpad-buildd_115~0.IS.08.04 python-lpbuildd_115~0.IS.08.04 bzr_2.5.1-0ubuntu2. Syncing the system clock with the buildd NTP service... 18 Sep 07:57:06 ntpdate[20788]: adjust time server 10.211.37.1 offset 0.000030 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-4982860', '/home/buildd/filecache-default/a2fc9f91384b34a9eec345fc176971a233ea7a2b'] Unpacking chroot for build PACKAGEBUILD-4982860 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-4982860'] Mounting chroot for build PACKAGEBUILD-4982860 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-4982860', 'deb http://ftpmaster.internal/ubuntu saucy main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu saucy-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu saucy-updates main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-4982860 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-4982860', 'armhf'] Updating debian chroot for build PACKAGEBUILD-4982860 Ign http://ftpmaster.internal saucy InRelease Ign http://archive-team.internal saucy InRelease Ign http://ftpmaster.internal saucy-security InRelease Ign http://archive-team.internal saucy Release.gpg Ign http://ftpmaster.internal saucy-updates InRelease Get:1 http://archive-team.internal saucy Release [728 B] Get:2 http://ftpmaster.internal saucy Release.gpg [933 B] Get:3 http://ftpmaster.internal saucy-security Release.gpg [933 B] Get:4 http://ftpmaster.internal saucy-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal saucy Release [49.6 kB] Get:6 http://ftpmaster.internal saucy-security Release [49.6 kB] Get:7 http://ftpmaster.internal saucy-updates Release [49.6 kB] Get:8 http://archive-team.internal saucy/main armhf Packages Ign http://archive-team.internal saucy/main Translation-en Get:9 http://ftpmaster.internal saucy/main armhf Packages [1244 kB] Get:10 http://ftpmaster.internal saucy/restricted armhf Packages [1161 B] Get:11 http://ftpmaster.internal saucy/universe armhf Packages [5493 kB] Get:12 http://ftpmaster.internal saucy/multiverse armhf Packages [113 kB] Get:13 http://ftpmaster.internal saucy/main Translation-en [713 kB] Get:14 http://ftpmaster.internal saucy/multiverse Translation-en [101 kB] Get:15 http://ftpmaster.internal saucy/restricted Translation-en [2904 B] Get:16 http://ftpmaster.internal saucy/universe Translation-en [3879 kB] Get:17 http://ftpmaster.internal saucy-security/main armhf Packages [14 B] Get:18 http://ftpmaster.internal saucy-security/restricted armhf Packages [14 B] Get:19 http://ftpmaster.internal saucy-security/universe armhf Packages [14 B] Get:20 http://ftpmaster.internal saucy-security/multiverse armhf Packages [14 B] Get:21 http://ftpmaster.internal saucy-security/main Translation-en [14 B] Get:22 http://ftpmaster.internal saucy-security/multiverse Translation-en [14 B] Get:23 http://ftpmaster.internal saucy-security/restricted Translation-en [14 B] Get:24 http://ftpmaster.internal saucy-security/universe Translation-en [14 B] Get:25 http://ftpmaster.internal saucy-updates/main armhf Packages [14 B] Get:26 http://ftpmaster.internal saucy-updates/restricted armhf Packages [14 B] Get:27 http://ftpmaster.internal saucy-updates/universe armhf Packages [14 B] Get:28 http://ftpmaster.internal saucy-updates/multiverse armhf Packages [14 B] Get:29 http://ftpmaster.internal saucy-updates/main Translation-en [14 B] Get:30 http://ftpmaster.internal saucy-updates/multiverse Translation-en [14 B] Get:31 http://ftpmaster.internal saucy-updates/restricted Translation-en [14 B] Get:32 http://ftpmaster.internal saucy-updates/universe Translation-en [14 B] Fetched 11.7 MB in 14s (806 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https binutils cpp-4.8 g++-4.8 gcc-4.8 gcc-4.8-base ifupdown libapt-pkg4.12 libasan0 libatomic1 libcurl3-gnutls libgcc-4.8-dev libgcc1 libgomp1 libgpg-error0 libstdc++-4.8-dev libstdc++6 libudev1 linux-libc-dev lsb-base mountall udev 23 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 27.7 MB of archives. After this operation, 63.5 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libgomp1 libasan0 gcc-4.8-base libgcc1 libatomic1 cpp-4.8 binutils libstdc++-4.8-dev g++-4.8 gcc-4.8 libgcc-4.8-dev libstdc++6 libapt-pkg4.12 apt lsb-base udev libudev1 mountall libcurl3-gnutls libgpg-error0 ifupdown apt-transport-https linux-libc-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ saucy/main libgomp1 armhf 4.8.1-10ubuntu3 [25.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ saucy/main libasan0 armhf 4.8.1-10ubuntu3 [67.5 kB] Get:3 http://ftpmaster.internal/ubuntu/ saucy/main gcc-4.8-base armhf 4.8.1-10ubuntu3 [16.4 kB] Get:4 http://ftpmaster.internal/ubuntu/ saucy/main libgcc1 armhf 1:4.8.1-10ubuntu3 [48.9 kB] Get:5 http://ftpmaster.internal/ubuntu/ saucy/main libatomic1 armhf 4.8.1-10ubuntu3 [6766 B] Get:6 http://ftpmaster.internal/ubuntu/ saucy/main cpp-4.8 armhf 4.8.1-10ubuntu3 [5186 kB] Get:7 http://ftpmaster.internal/ubuntu/ saucy/main binutils armhf 2.23.52.20130913-0ubuntu1 [3430 kB] Get:8 http://ftpmaster.internal/ubuntu/ saucy/main libstdc++-4.8-dev armhf 4.8.1-10ubuntu3 [1807 kB] Get:9 http://ftpmaster.internal/ubuntu/ saucy/main g++-4.8 armhf 4.8.1-10ubuntu3 [6376 kB] Get:10 http://ftpmaster.internal/ubuntu/ saucy/main gcc-4.8 armhf 4.8.1-10ubuntu3 [5905 kB] Get:11 http://ftpmaster.internal/ubuntu/ saucy/main libgcc-4.8-dev armhf 4.8.1-10ubuntu3 [303 kB] Get:12 http://ftpmaster.internal/ubuntu/ saucy/main libstdc++6 armhf 4.8.1-10ubuntu3 [278 kB] Get:13 http://ftpmaster.internal/ubuntu/ saucy/main libapt-pkg4.12 armhf 0.9.9.1~ubuntu3 [752 kB] Get:14 http://ftpmaster.internal/ubuntu/ saucy/main apt armhf 0.9.9.1~ubuntu3 [1202 kB] Get:15 http://ftpmaster.internal/ubuntu/ saucy/main lsb-base all 4.1+Debian11ubuntu4 [14.2 kB] Get:16 http://ftpmaster.internal/ubuntu/ saucy/main udev armhf 204-0ubuntu11 [1007 kB] Get:17 http://ftpmaster.internal/ubuntu/ saucy/main libudev1 armhf 204-0ubuntu11 [32.4 kB] Get:18 http://ftpmaster.internal/ubuntu/ saucy/main mountall armhf 2.51 [68.0 kB] Get:19 http://ftpmaster.internal/ubuntu/ saucy/main libcurl3-gnutls armhf 7.32.0-1ubuntu1 [162 kB] Get:20 http://ftpmaster.internal/ubuntu/ saucy/main libgpg-error0 armhf 1.12-0.2 [11.9 kB] Get:21 http://ftpmaster.internal/ubuntu/ saucy/main ifupdown armhf 0.7.44ubuntu3 [52.0 kB] Get:22 http://ftpmaster.internal/ubuntu/ saucy/main apt-transport-https armhf 0.9.9.1~ubuntu3 [15.4 kB] Get:23 http://ftpmaster.internal/ubuntu/ saucy/main linux-libc-dev armhf 3.11.0-7.14 [915 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.7 MB in 3s (7334 kB/s) (Reading database ... 11884 files and directories currently installed.) Preparing to replace libgomp1:armhf 4.8.1-9ubuntu1 (using .../libgomp1_4.8.1-10ubuntu3_armhf.deb) ... Unpacking replacement libgomp1:armhf ... Preparing to replace libasan0:armhf 4.8.1-9ubuntu1 (using .../libasan0_4.8.1-10ubuntu3_armhf.deb) ... Unpacking replacement libasan0:armhf ... Preparing to replace gcc-4.8-base:armhf 4.8.1-9ubuntu1 (using .../gcc-4.8-base_4.8.1-10ubuntu3_armhf.deb) ... Unpacking replacement gcc-4.8-base:armhf ... Setting up gcc-4.8-base:armhf (4.8.1-10ubuntu3) ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace libgcc1:armhf 1:4.8.1-9ubuntu1 (using .../libgcc1_1%3a4.8.1-10ubuntu3_armhf.deb) ... Unpacking replacement libgcc1:armhf ... Setting up libgcc1:armhf (1:4.8.1-10ubuntu3) ... Processing triggers for libc-bin ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace libatomic1:armhf 4.8.1-9ubuntu1 (using .../libatomic1_4.8.1-10ubuntu3_armhf.deb) ... Unpacking replacement libatomic1:armhf ... Preparing to replace cpp-4.8 4.8.1-9ubuntu1 (using .../cpp-4.8_4.8.1-10ubuntu3_armhf.deb) ... Unpacking replacement cpp-4.8 ... Preparing to replace binutils 2.23.52.20130727-1ubuntu1 (using .../binutils_2.23.52.20130913-0ubuntu1_armhf.deb) ... Unpacking replacement binutils ... Preparing to replace libstdc++-4.8-dev:armhf 4.8.1-9ubuntu1 (using .../libstdc++-4.8-dev_4.8.1-10ubuntu3_armhf.deb) ... Unpacking replacement libstdc++-4.8-dev:armhf ... Preparing to replace g++-4.8 4.8.1-9ubuntu1 (using .../g++-4.8_4.8.1-10ubuntu3_armhf.deb) ... Unpacking replacement g++-4.8 ... Preparing to replace gcc-4.8 4.8.1-9ubuntu1 (using .../gcc-4.8_4.8.1-10ubuntu3_armhf.deb) ... Unpacking replacement gcc-4.8 ... Preparing to replace libgcc-4.8-dev:armhf 4.8.1-9ubuntu1 (using .../libgcc-4.8-dev_4.8.1-10ubuntu3_armhf.deb) ... Unpacking replacement libgcc-4.8-dev:armhf ... Preparing to replace libstdc++6:armhf 4.8.1-9ubuntu1 (using .../libstdc++6_4.8.1-10ubuntu3_armhf.deb) ... Unpacking replacement libstdc++6:armhf ... Setting up libstdc++6:armhf (4.8.1-10ubuntu3) ... Processing triggers for libc-bin ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace libapt-pkg4.12:armhf 0.9.9.1~ubuntu2 (using .../libapt-pkg4.12_0.9.9.1~ubuntu3_armhf.deb) ... Unpacking replacement libapt-pkg4.12:armhf ... Setting up libapt-pkg4.12:armhf (0.9.9.1~ubuntu3) ... Processing triggers for libc-bin ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace apt 0.9.9.1~ubuntu2 (using .../apt_0.9.9.1~ubuntu3_armhf.deb) ... Unpacking replacement apt ... Setting up apt (0.9.9.1~ubuntu3) ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: key C0B21F32: "Ubuntu Archive Automatic Signing Key (2012) " not changed gpg: key EFE21092: "Ubuntu CD Image Automatic Signing Key (2012) " not changed gpg: Total number processed: 4 gpg: unchanged: 4 (Reading database ... 11884 files and directories currently installed.) Preparing to replace lsb-base 4.1+Debian11ubuntu3 (using .../lsb-base_4.1+Debian11ubuntu4_all.deb) ... Unpacking replacement lsb-base ... Setting up lsb-base (4.1+Debian11ubuntu4) ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace udev 204-0ubuntu10 (using .../udev_204-0ubuntu11_armhf.deb) ... Adding 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace libudev1:armhf 204-0ubuntu10 (using .../libudev1_204-0ubuntu11_armhf.deb) ... Unpacking replacement libudev1:armhf ... Preparing to replace mountall 2.49 (using .../mountall_2.51_armhf.deb) ... Unpacking replacement mountall ... Preparing to replace libcurl3-gnutls:armhf 7.31.0-2ubuntu1 (using .../libcurl3-gnutls_7.32.0-1ubuntu1_armhf.deb) ... Unpacking replacement libcurl3-gnutls:armhf ... Preparing to replace libgpg-error0:armhf 1.12-0.1 (using .../libgpg-error0_1.12-0.2_armhf.deb) ... Unpacking replacement libgpg-error0:armhf ... Preparing to replace ifupdown 0.7.44ubuntu2 (using .../ifupdown_0.7.44ubuntu3_armhf.deb) ... Unpacking replacement ifupdown ... Preparing to replace apt-transport-https 0.9.9.1~ubuntu2 (using .../apt-transport-https_0.9.9.1~ubuntu3_armhf.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace linux-libc-dev:armhf 3.11.0-4.9 (using .../linux-libc-dev_3.11.0-7.14_armhf.deb) ... Unpacking replacement linux-libc-dev:armhf ... Setting up libgomp1:armhf (4.8.1-10ubuntu3) ... Setting up libasan0:armhf (4.8.1-10ubuntu3) ... Setting up libatomic1:armhf (4.8.1-10ubuntu3) ... Setting up cpp-4.8 (4.8.1-10ubuntu3) ... Setting up binutils (2.23.52.20130913-0ubuntu1) ... Setting up libgcc-4.8-dev:armhf (4.8.1-10ubuntu3) ... Setting up libstdc++-4.8-dev:armhf (4.8.1-10ubuntu3) ... Setting up gcc-4.8 (4.8.1-10ubuntu3) ... Setting up g++-4.8 (4.8.1-10ubuntu3) ... Setting up libudev1:armhf (204-0ubuntu11) ... Setting up udev (204-0ubuntu11) ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up mountall (2.51) ... Installing new version of config file /etc/init/mountall.conf ... Setting up libcurl3-gnutls:armhf (7.32.0-1ubuntu1) ... Setting up libgpg-error0:armhf (1.12-0.2) ... Setting up ifupdown (0.7.44ubuntu3) ... Setting up apt-transport-https (0.9.9.1~ubuntu3) ... Setting up linux-libc-dev:armhf (3.11.0-7.14) ... Processing triggers for libc-bin ... Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-4982860', 'armhf', 'saucy', '--nolog', '--batch', '--archive=ubuntu', '--dist=saucy', '--purpose=COPY', '--architecture=armhf', '--comp=universe', 'apbs_1.3.0-2.dsc'] Initiating build PACKAGEBUILD-4982860 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.2.0-51-highbank #77-Ubuntu SMP PREEMPT Thu Jul 25 04:09:51 UTC 2013 armv7l Automatic build of apbs_1.3.0-2 on kishi05 by sbuild/armhf 1.170.5 Build started at 20130918-0758 ****************************************************************************** apbs_1.3.0-2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: autoconf, automake, autotools-dev (>> 20100122.1), bc, debhelper (>> 7.0.50~), dh-autoreconf, gfortran, libarpack2-dev, libblas-dev, libmaloc-dev, mpi-default-dev (>= 0.3), python-minimal, python-setuptools Checking for already installed source dependencies... autoconf: missing automake: missing autotools-dev: missing bc: missing debhelper: missing dh-autoreconf: missing gfortran: missing libarpack2-dev: missing libblas-dev: missing libmaloc-dev: missing mpi-default-dev: missing python-minimal: missing python-setuptools: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install autoconf automake autotools-dev bc debhelper dh-autoreconf gfortran libarpack2-dev libblas-dev libmaloc-dev mpi-default-dev python-minimal python-setuptools Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof autopoint bsdmainutils dh-apparmor dh-python file gettext gettext-base gfortran-4.8 git git-man groff-base install-info intltool-debian libarpack2 libasprintf-dev libasprintf0c2 libblas3 libcroco3 liberror-perl libexpat1 libffi6 libgettextpo-dev libgettextpo0 libgfortran-4.8-dev libgfortran3 libglib2.0-0 libibverbs-dev libibverbs1 liblapack-dev liblapack3 libmagic1 libmaloc1 libopenmpi-dev libopenmpi1.3 libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libsigsegv2 libtool libtorque2 libunistring0 libxml2 m4 man-db mime-support openmpi-common po-debconf python python-pkg-resources python2.7 python2.7-minimal python3 python3-minimal python3.3 python3.3-minimal Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc wamerican wordlist whois vacation dh-make gettext-doc gfortran-multilib gfortran-doc gfortran-4.8-multilib gfortran-4.8-doc libgfortran3-dbg git-daemon-run git-daemon-sysvinit git-doc git-el git-email git-gui gitk gitweb git-arch git-bzr git-cvs git-svn groff libtool-doc automaken gcj www-browser libmail-box-perl python-doc python-tk python-distribute python-distribute-doc python2.7-doc binfmt-support python3-doc python3-tk python3.3-doc Recommended packages: curl wget lynx-cur less rsync ssh-client libglib2.0-data shared-mime-info libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof autoconf automake autopoint autotools-dev bc bsdmainutils debhelper dh-apparmor dh-autoreconf dh-python file gettext gettext-base gfortran gfortran-4.8 git git-man groff-base install-info intltool-debian libarpack2 libarpack2-dev libasprintf-dev libasprintf0c2 libblas-dev libblas3 libcroco3 liberror-perl libexpat1 libffi6 libgettextpo-dev libgettextpo0 libgfortran-4.8-dev libgfortran3 libglib2.0-0 libibverbs-dev libibverbs1 liblapack-dev liblapack3 libmagic1 libmaloc-dev libmaloc1 libopenmpi-dev libopenmpi1.3 libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libsigsegv2 libtool libtorque2 libunistring0 libxml2 m4 man-db mime-support mpi-default-dev openmpi-common po-debconf python python-minimal python-pkg-resources python-setuptools python2.7 python2.7-minimal python3 python3-minimal python3.3 python3.3-minimal 0 upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 43.5 MB of archives. After this operation, 113 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! install-info libexpat1 libffi6 libmagic1 libpython3.3-minimal mime-support libpython3.3-stdlib python3.3-minimal libasprintf0c2 libglib2.0-0 libpipeline1 libxml2 groff-base bsdmainutils man-db libcroco3 libunistring0 libgettextpo0 libgfortran3 libsigsegv2 libpython2.7-minimal python2.7-minimal file libpython3-stdlib python3.3 python3-minimal dh-python python3 gettext-base m4 autoconf autotools-dev automake liberror-perl git-man git autopoint bc libasprintf-dev libgettextpo-dev gettext intltool-debian po-debconf apparmor-easyprof dh-apparmor debhelper libtool dh-autoreconf libgfortran-4.8-dev gfortran-4.8 gfortran libblas3 liblapack3 libarpack2 libblas-dev liblapack-dev libarpack2-dev libmaloc1 libmaloc-dev libpython2.7-stdlib libpython-stdlib libtorque2 openmpi-common python2.7 python-minimal python python-pkg-resources python-setuptools libibverbs1 libibverbs-dev libopenmpi1.3 libopenmpi-dev mpi-default-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ saucy/main install-info armhf 5.1.dfsg.1-4ubuntu1 [50.0 kB] Get:2 http://ftpmaster.internal/ubuntu/ saucy/main libexpat1 armhf 2.1.0-4 [101 kB] Get:3 http://ftpmaster.internal/ubuntu/ saucy/main libffi6 armhf 3.0.13-4 [16.6 kB] Get:4 http://ftpmaster.internal/ubuntu/ saucy/main libmagic1 armhf 5.11-2ubuntu4 [167 kB] Get:5 http://ftpmaster.internal/ubuntu/ saucy/main libpython3.3-minimal armhf 3.3.2-3ubuntu1 [575 kB] Get:6 http://ftpmaster.internal/ubuntu/ saucy/main mime-support all 3.54ubuntu1 [31.7 kB] Get:7 http://ftpmaster.internal/ubuntu/ saucy/main libpython3.3-stdlib armhf 3.3.2-3ubuntu1 [2638 kB] Get:8 http://ftpmaster.internal/ubuntu/ saucy/main python3.3-minimal armhf 3.3.2-3ubuntu1 [1434 kB] Get:9 http://ftpmaster.internal/ubuntu/ saucy/main libasprintf0c2 armhf 0.18.1.1-10ubuntu3 [6544 B] Get:10 http://ftpmaster.internal/ubuntu/ saucy/main libglib2.0-0 armhf 2.37.7-1ubuntu2 [890 kB] Get:11 http://ftpmaster.internal/ubuntu/ saucy/main libpipeline1 armhf 1.2.4-1 [21.7 kB] Get:12 http://ftpmaster.internal/ubuntu/ saucy/main libxml2 armhf 2.9.1+dfsg1-3ubuntu2 [570 kB] Get:13 http://ftpmaster.internal/ubuntu/ saucy/main groff-base armhf 1.22.2-3 [648 kB] Get:14 http://ftpmaster.internal/ubuntu/ saucy/main bsdmainutils armhf 9.0.5ubuntu1 [195 kB] Get:15 http://ftpmaster.internal/ubuntu/ saucy/main man-db armhf 2.6.5-2 [684 kB] Get:16 http://ftpmaster.internal/ubuntu/ saucy/main libcroco3 armhf 0.6.8-2 [69.2 kB] Get:17 http://ftpmaster.internal/ubuntu/ saucy/main libunistring0 armhf 0.9.3-5build1 [395 kB] Get:18 http://ftpmaster.internal/ubuntu/ saucy/main libgettextpo0 armhf 0.18.1.1-10ubuntu3 [101 kB] Get:19 http://ftpmaster.internal/ubuntu/ saucy/main libgfortran3 armhf 4.8.1-10ubuntu3 [209 kB] Get:20 http://ftpmaster.internal/ubuntu/ saucy/main libsigsegv2 armhf 2.10-2 [14.0 kB] Get:21 http://ftpmaster.internal/ubuntu/ saucy/main libpython2.7-minimal armhf 2.7.5-5ubuntu1 [499 kB] Get:22 http://ftpmaster.internal/ubuntu/ saucy/main python2.7-minimal armhf 2.7.5-5ubuntu1 [1356 kB] Get:23 http://ftpmaster.internal/ubuntu/ saucy/main file armhf 5.11-2ubuntu4 [17.9 kB] Get:24 http://ftpmaster.internal/ubuntu/ saucy/main libpython3-stdlib armhf 3.3.2-14 [8188 B] Get:25 http://ftpmaster.internal/ubuntu/ saucy/main python3.3 armhf 3.3.2-3ubuntu1 [122 kB] Get:26 http://ftpmaster.internal/ubuntu/ saucy/main python3-minimal armhf 3.3.2-14 [27.0 kB] Get:27 http://ftpmaster.internal/ubuntu/ saucy/main dh-python all 1.20130913-1 [54.4 kB] Get:28 http://ftpmaster.internal/ubuntu/ saucy/main python3 armhf 3.3.2-14 [9174 B] Get:29 http://ftpmaster.internal/ubuntu/ saucy/main gettext-base armhf 0.18.1.1-10ubuntu3 [53.5 kB] Get:30 http://ftpmaster.internal/ubuntu/ saucy/main m4 armhf 1.4.16-5 [184 kB] Get:31 http://ftpmaster.internal/ubuntu/ saucy/main autoconf all 2.69-1.1 [573 kB] Get:32 http://ftpmaster.internal/ubuntu/ saucy/main autotools-dev all 20130810.1 [44.3 kB] Get:33 http://ftpmaster.internal/ubuntu/ saucy/main automake all 1:1.13.3-1.1ubuntu2 [573 kB] Get:34 http://ftpmaster.internal/ubuntu/ saucy/main liberror-perl all 0.17-1 [23.8 kB] Get:35 http://ftpmaster.internal/ubuntu/ saucy/main git-man all 1:1.8.3.2-1 [670 kB] Get:36 http://ftpmaster.internal/ubuntu/ saucy/main git armhf 1:1.8.3.2-1 [6520 kB] Get:37 http://ftpmaster.internal/ubuntu/ saucy/main autopoint all 0.18.1.1-10ubuntu3 [605 kB] Get:38 http://ftpmaster.internal/ubuntu/ saucy/main bc armhf 1.06.95-8 [82.2 kB] Get:39 http://ftpmaster.internal/ubuntu/ saucy/main libasprintf-dev armhf 0.18.1.1-10ubuntu3 [4446 B] Get:40 http://ftpmaster.internal/ubuntu/ saucy/main libgettextpo-dev armhf 0.18.1.1-10ubuntu3 [119 kB] Get:41 http://ftpmaster.internal/ubuntu/ saucy/main gettext armhf 0.18.1.1-10ubuntu3 [931 kB] Get:42 http://ftpmaster.internal/ubuntu/ saucy/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:43 http://ftpmaster.internal/ubuntu/ saucy/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:44 http://ftpmaster.internal/ubuntu/ saucy/main apparmor-easyprof all 2.8.0-0ubuntu28 [23.3 kB] Get:45 http://ftpmaster.internal/ubuntu/ saucy/main dh-apparmor all 2.8.0-0ubuntu28 [7710 B] Get:46 http://ftpmaster.internal/ubuntu/ saucy/main debhelper all 9.20130630ubuntu1 [629 kB] Get:47 http://ftpmaster.internal/ubuntu/ saucy/main libtool armhf 2.4.2-1.3ubuntu1 [305 kB] Get:48 http://ftpmaster.internal/ubuntu/ saucy/main dh-autoreconf all 9 [15.5 kB] Get:49 http://ftpmaster.internal/ubuntu/ saucy/main libgfortran-4.8-dev armhf 4.8.1-10ubuntu3 [286 kB] Get:50 http://ftpmaster.internal/ubuntu/ saucy/main gfortran-4.8 armhf 4.8.1-10ubuntu3 [5480 kB] Get:51 http://ftpmaster.internal/ubuntu/ saucy/main gfortran armhf 4:4.8.1-2ubuntu2 [1220 B] Get:52 http://ftpmaster.internal/ubuntu/ saucy/main libblas3 armhf 1.2.20110419-5 [184 kB] Get:53 http://ftpmaster.internal/ubuntu/ saucy/main liblapack3 armhf 3.4.2+dfsg-2 [3476 kB] Get:54 http://ftpmaster.internal/ubuntu/ saucy/universe libarpack2 armhf 3.1.3-3 [115 kB] Get:55 http://ftpmaster.internal/ubuntu/ saucy/main libblas-dev armhf 1.2.20110419-5 [183 kB] Get:56 http://ftpmaster.internal/ubuntu/ saucy/main liblapack-dev armhf 3.4.2+dfsg-2 [3756 kB] Get:57 http://ftpmaster.internal/ubuntu/ saucy/universe libarpack2-dev armhf 3.1.3-3 [161 kB] Get:58 http://ftpmaster.internal/ubuntu/ saucy/universe libmaloc1 armhf 0.2-2.3 [50.3 kB] Get:59 http://ftpmaster.internal/ubuntu/ saucy/universe libmaloc-dev armhf 0.2-2.3 [108 kB] Get:60 http://ftpmaster.internal/ubuntu/ saucy/main libpython2.7-stdlib armhf 2.7.5-5ubuntu1 [2406 kB] Get:61 http://ftpmaster.internal/ubuntu/ saucy/main libpython-stdlib armhf 2.7.5-4ubuntu1 [7756 B] Get:62 http://ftpmaster.internal/ubuntu/ saucy/universe libtorque2 armhf 2.4.16+dfsg-1ubuntu1 [73.9 kB] Get:63 http://ftpmaster.internal/ubuntu/ saucy/universe openmpi-common all 1.4.5-1ubuntu2 [92.3 kB] Get:64 http://ftpmaster.internal/ubuntu/ saucy/main python2.7 armhf 2.7.5-5ubuntu1 [189 kB] Get:65 http://ftpmaster.internal/ubuntu/ saucy/main python-minimal armhf 2.7.5-4ubuntu1 [31.5 kB] Get:66 http://ftpmaster.internal/ubuntu/ saucy/main python armhf 2.7.5-4ubuntu1 [167 kB] Get:67 http://ftpmaster.internal/ubuntu/ saucy/main python-pkg-resources all 0.6.37-1ubuntu1 [63.0 kB] Get:68 http://ftpmaster.internal/ubuntu/ saucy/main python-setuptools all 0.6.37-1ubuntu1 [455 kB] Get:69 http://ftpmaster.internal/ubuntu/ saucy/main libibverbs1 armhf 1.1.6-1ubuntu2 [22.6 kB] Get:70 http://ftpmaster.internal/ubuntu/ saucy/main libibverbs-dev armhf 1.1.6-1ubuntu2 [71.6 kB] Get:71 http://ftpmaster.internal/ubuntu/ saucy/universe libopenmpi1.3 armhf 1.4.5-1ubuntu2 [1156 kB] Get:72 http://ftpmaster.internal/ubuntu/ saucy/universe libopenmpi-dev armhf 1.4.5-1ubuntu2 [2448 kB] Get:73 http://ftpmaster.internal/ubuntu/ saucy/universe mpi-default-dev armhf 1.0.1 [3658 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 43.5 MB in 6s (6738 kB/s) Selecting previously unselected package install-info. (Reading database ... 11884 files and directories currently installed.) Unpacking install-info (from .../install-info_5.1.dfsg.1-4ubuntu1_armhf.deb) ... Setting up install-info (5.1.dfsg.1-4ubuntu1) ... Selecting previously unselected package libexpat1:armhf. (Reading database ... 11897 files and directories currently installed.) Unpacking libexpat1:armhf (from .../libexpat1_2.1.0-4_armhf.deb) ... Selecting previously unselected package libffi6:armhf. Unpacking libffi6:armhf (from .../libffi6_3.0.13-4_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-2ubuntu4_armhf.deb) ... Selecting previously unselected package libpython3.3-minimal:armhf. Unpacking libpython3.3-minimal:armhf (from .../libpython3.3-minimal_3.3.2-3ubuntu1_armhf.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.54ubuntu1_all.deb) ... 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Unpacking libpython2.7-minimal:armhf (from .../libpython2.7-minimal_2.7.5-5ubuntu1_armhf.deb) ... Selecting previously unselected package python2.7-minimal. Unpacking python2.7-minimal (from .../python2.7-minimal_2.7.5-5ubuntu1_armhf.deb) ... Selecting previously unselected package file. Unpacking file (from .../file_5.11-2ubuntu4_armhf.deb) ... Selecting previously unselected package libpython3-stdlib:armhf. Unpacking libpython3-stdlib:armhf (from .../libpython3-stdlib_3.3.2-14_armhf.deb) ... Selecting previously unselected package python3.3. Unpacking python3.3 (from .../python3.3_3.3.2-3ubuntu1_armhf.deb) ... Selecting previously unselected package python3-minimal. Unpacking python3-minimal (from .../python3-minimal_3.3.2-14_armhf.deb) ... Selecting previously unselected package dh-python. Unpacking dh-python (from .../dh-python_1.20130913-1_all.deb) ... Selecting previously unselected package python3. Unpacking python3 (from .../python3_3.3.2-14_armhf.deb) ... 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Setting up libexpat1:armhf (2.1.0-4) ... Setting up libffi6:armhf (3.0.13-4) ... Setting up libmagic1:armhf (5.11-2ubuntu4) ... Setting up libpython3.3-minimal:armhf (3.3.2-3ubuntu1) ... Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython3.3-stdlib:armhf (3.3.2-3ubuntu1) ... Setting up python3.3-minimal (3.3.2-3ubuntu1) ... Setting up libasprintf0c2:armhf (0.18.1.1-10ubuntu3) ... Setting up libglib2.0-0:armhf (2.37.7-1ubuntu2) ... No schema files found: doing nothing. Setting up libpipeline1:armhf (1.2.4-1) ... Setting up libxml2:armhf (2.9.1+dfsg1-3ubuntu2) ... Setting up groff-base (1.22.2-3) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:armhf (0.6.8-2) ... Setting up libunistring0:armhf (0.9.3-5build1) ... Setting up libgettextpo0:armhf (0.18.1.1-10ubuntu3) ... Setting up libgfortran3:armhf (4.8.1-10ubuntu3) ... Setting up libsigsegv2:armhf (2.10-2) ... Setting up libpython2.7-minimal:armhf (2.7.5-5ubuntu1) ... Setting up python2.7-minimal (2.7.5-5ubuntu1) ... Linking and byte-compiling packages for runtime python2.7... Setting up file (5.11-2ubuntu4) ... Setting up libpython3-stdlib:armhf (3.3.2-14) ... Setting up python3.3 (3.3.2-3ubuntu1) ... Setting up python3-minimal (3.3.2-14) ... Setting up gettext-base (0.18.1.1-10ubuntu3) ... Setting up m4 (1.4.16-5) ... Setting up autoconf (2.69-1.1) ... Setting up autotools-dev (20130810.1) ... Setting up automake (1:1.13.3-1.1ubuntu2) ... update-alternatives: using /usr/bin/automake-1.13 to provide /usr/bin/automake (automake) in auto mode Setting up liberror-perl (0.17-1) ... Setting up git-man (1:1.8.3.2-1) ... Setting up git (1:1.8.3.2-1) ... Setting up autopoint (0.18.1.1-10ubuntu3) ... Setting up bc (1.06.95-8) ... Setting up libasprintf-dev:armhf (0.18.1.1-10ubuntu3) ... Setting up libgettextpo-dev:armhf (0.18.1.1-10ubuntu3) ... Setting up gettext (0.18.1.1-10ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up libtool (2.4.2-1.3ubuntu1) ... Setting up libgfortran-4.8-dev:armhf (4.8.1-10ubuntu3) ... Setting up gfortran-4.8 (4.8.1-10ubuntu3) ... Setting up gfortran (4:4.8.1-2ubuntu2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode Setting up libblas3 (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up liblapack3 (3.4.2+dfsg-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libarpack2 (3.1.3-3) ... Setting up libblas-dev (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up liblapack-dev (3.4.2+dfsg-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libarpack2-dev (3.1.3-3) ... Setting up libmaloc1 (0.2-2.3) ... Setting up libmaloc-dev (0.2-2.3) ... Setting up libpython2.7-stdlib:armhf (2.7.5-5ubuntu1) ... Setting up libpython-stdlib:armhf (2.7.5-4ubuntu1) ... Setting up libtorque2 (2.4.16+dfsg-1ubuntu1) ... Setting up openmpi-common (1.4.5-1ubuntu2) ... Setting up python2.7 (2.7.5-5ubuntu1) ... Setting up python-minimal (2.7.5-4ubuntu1) ... Setting up python (2.7.5-4ubuntu1) ... Setting up python-pkg-resources (0.6.37-1ubuntu1) ... Setting up python-setuptools (0.6.37-1ubuntu1) ... Setting up libibverbs1 (1.1.6-1ubuntu2) ... Setting up libibverbs-dev (1.1.6-1ubuntu2) ... Setting up libopenmpi1.3 (1.4.5-1ubuntu2) ... Setting up libopenmpi-dev (1.4.5-1ubuntu2) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up mpi-default-dev (1.0.1) ... Setting up python3 (3.3.2-14) ... running python rtupdate hooks for python3.3... running python post-rtupdate hooks for python3.3... Setting up apparmor-easyprof (2.8.0-0ubuntu28) ... Setting up dh-apparmor (2.8.0-0ubuntu28) ... Setting up debhelper (9.20130630ubuntu1) ... Setting up dh-autoreconf (9) ... Setting up dh-python (1.20130913-1) ... Processing triggers for libc-bin ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.17-91ubuntu1 make_3.81-8.2ubuntu3 dpkg-dev_1.16.10ubuntu3 gcc-4.8_4.8.1-10ubuntu3 g++-4.8_4.8.1-10ubuntu3 binutils_2.23.52.20130913-0ubuntu1 libstdc++-4.8-dev_4.8.1-10ubuntu3 libstdc++6_4.8.1-10ubuntu3 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Sun Apr 29 21:49:33 2012 UTC using DSA key ID 088F6B8C gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./apbs_1.3.0-2.dsc dpkg-source: info: extracting apbs in apbs-1.3.0 dpkg-source: info: unpacking apbs_1.3.0.orig.tar.gz dpkg-source: info: unpacking apbs_1.3.0-2.debian.tar.gz dpkg-source: info: applying 03_skip_expensive_tests.patch dpkg-source: info: applying 06_quicktest.patch dpkg-source: info: applying 07_destdir.patch dpkg-source: info: applying 08_distclean.patch dpkg-source: info: applying 09_acinclude_fix.patch dpkg-buildpackage: source package apbs dpkg-buildpackage: source version 1.3.0-2 dpkg-source --before-build apbs-1.3.0 dpkg-buildpackage: host architecture armhf /usr/bin/fakeroot debian/rules clean dh clean --with autotools_dev,autoreconf dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/build/buildd/apbs-1.3.0' (cd examples; /usr/bin/make distclean) make[2]: Entering directory `/build/buildd/apbs-1.3.0/examples' make[2]: *** No rule to make target `distclean'. Stop. make[2]: Leaving directory `/build/buildd/apbs-1.3.0/examples' make[1]: [override_dh_auto_clean] Error 2 (ignored) dh_auto_clean find /build/buildd/apbs-1.3.0 -name "Makefile" | xargs rm -f make[1]: Leaving directory `/build/buildd/apbs-1.3.0' dh_autotools-dev_restoreconfig dh_autoreconf_clean dh_clean debian/rules build-arch dh build-arch --with autotools_dev,autoreconf dh_testdir -a dh_autotools-dev_updateconfig -a dh_autoreconf -a libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `config'. libtoolize: copying file `config/ltmain.sh' libtoolize: Consider adding `AC_CONFIG_MACRO_DIR([m4])' to configure.ac and libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree. libtoolize: Consider adding `-I m4' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:104: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:104: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation bin/Makefile.am:35: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') contrib/aqua/Makefile.am:19: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') contrib/pmgZ/Makefile.am:22: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') contrib/zlib/Makefile.am:20: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') examples/protein-rna/Makefile.am:26: warning: '%'-style pattern rules are a GNU make extension examples/protein-rna/Makefile.am:28: warning: '%'-style pattern rules are a GNU make extension src/aaa_lib/Makefile.am:28: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/fem/Makefile.am:17: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/generic/Makefile.am:19: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/mg/Makefile.am:17: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') tools/arpack/Makefile.am:16: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') tools/manip/Makefile.am:18: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') tools/mesh/Makefile.am:11: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') tools/python/Makefile.am:11: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') tools/python/vgrid/Makefile.am:11: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') debian/rules override_dh_auto_configure make[1]: Entering directory `/build/buildd/apbs-1.3.0' dh_auto_configure -- \ --disable-zlib \ --with-fetk-include=/usr/include \ --with-fetk-library=/usr/lib \ --with-blas=-lblas \ --with-arpack=/usr/lib \ --with-openmpi=/usr/lib/openmpi configure: WARNING: unrecognized options: --disable-maintainer-mode checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking target system type... arm-unknown-linux-gnueabihf checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for --enable-fast option... no checking for --enable-python... no checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /usr/bin/mpicc.openmpi accepts -g... yes checking for /usr/bin/mpicc.openmpi option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of /usr/bin/mpicc.openmpi... none checking for gcc... /usr/bin/mpicc.openmpi checking whether we are using the GNU C compiler... (cached) yes checking whether /usr/bin/mpicc.openmpi accepts -g... (cached) yes checking for /usr/bin/mpicc.openmpi option to accept ISO C89... (cached) none needed checking dependency style of /usr/bin/mpicc.openmpi... (cached) none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking whether we are using the GNU Fortran 77 compiler... yes checking whether /usr/bin/mpif77.openmpi accepts -g... yes checking if Fortran 77 compiler accepts -nofor_main... no checking how f77 mangles function names... lowercase-underscore checking how to run the C preprocessor... /usr/bin/mpicc.openmpi -E checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by /usr/bin/mpicc.openmpi... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 805306365 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /usr/bin/mpicc.openmpi object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /usr/bin/mpicc.openmpi supports -fno-rtti -fno-exceptions... no checking for /usr/bin/mpicc.openmpi option to produce PIC... -fPIC -DPIC checking if /usr/bin/mpicc.openmpi PIC flag -fPIC -DPIC works... yes checking if /usr/bin/mpicc.openmpi static flag -static works... yes checking if /usr/bin/mpicc.openmpi supports -c -o file.o... yes checking if /usr/bin/mpicc.openmpi supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpicc.openmpi linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for /usr/bin/mpif77.openmpi option to produce PIC... -fPIC checking if /usr/bin/mpif77.openmpi PIC flag -fPIC works... yes checking if /usr/bin/mpif77.openmpi static flag -static works... yes checking if /usr/bin/mpif77.openmpi supports -c -o file.o... yes checking if /usr/bin/mpif77.openmpi supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpif77.openmpi linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for pow in -lm... yes checking for strerrno in -liberty... no checking for gethostbyname... yes checking for connect... yes checking for thr_create... no checking for thr_create in -lthread... no checking for time... yes checking for rand... yes checking for srand... yes checking the machine epsilon for VFLOOR... yes The machine epsilon for this system is: 1.19209E-07 configure: ----------------------------------------------------------- configure: ---------- begin configuring for MALOC linkage ------------ configure: ----------------------------------------------------------- checking for --with-fetk-include option... /usr/include checking for --with-fetk-library option... /usr/lib checking for /usr/include/maloc/maloc.h... yes configure: Using MALOC headers in /usr/include checking for /usr/lib/libmaloc.a... yes configure: Using MALOC libraries in /usr/lib checking for --with-mpich option... no checking for --with-mpich2 option... no checking for --with-lam option... no checking for --with-openmpi option... /usr/lib/openmpi checking for /usr/lib/openmpi/include/mpi.h... yes checking for /usr/lib/openmpi/lib/libmpi.a... yes checking for /usr/lib/openmpi/lib/libmpi.so... yes checking for /usr/lib/openmpi/lib/libmpi.dylib... no configure: --------------------------------------------------------------- configure: ---------- begin configuring for Python wrappers -------------- configure: --------------------------------------------------------------- checking for --enable-python... no configure: Python wrappers disabled checking for python... /usr/bin/python configure: Skipping MALOC installation; will use MALOC provided with FEtk checking for maloc_needs_rl in -lmaloc... no configure: ------------------------------------------------------------ configure: ---------- begin configuring for FEtk linkage -------------- configure: ------------------------------------------------------------ checking for --disable-fetk... no checking for user-specified FEtk include path... /usr/include checking for user-specified FEtk library path... /usr/lib checking mc/mc.h usability... no checking mc/mc.h presence... no checking for mc/mc.h... no checking for mc_link in -lmc... no checking mcx/mcx.h usability... no checking mcx/mcx.h presence... no checking for mcx/mcx.h... no checking for mcx_link in -lmcx... no configure: WARNING: FEtk component MC not found: finite element solver disabled. configure: WARNING: FEtk component MCX not found: hierarchical basis methods disabled. configure: --------------------------------------------------------------- configure: ------------ begin processing APBS configure options ---------- configure: --------------------------------------------------------------- checking for EMBED macro can be used... yes checking --enable-pansi... no checking for strcasecmp... yes checking for --disable-tools... no configure: tools will be compiled checking for --with-blas... -lblas configure: checking blas using -lblas checking for dscal in -lblas... yes checking --disable-zlib... checking for --with-arpack... -larpack -L/usr/lib checking for --disable-inline... no configure: inline functions will be used checking for --enable-tinker... no checking for --enable-abps-quiet... no checking for --disable-openmp... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating contrib/Makefile config.status: creating contrib/blas/Makefile config.status: creating contrib/pmgZ/Makefile config.status: creating contrib/aqua/Makefile config.status: creating contrib/opal/Makefile config.status: creating contrib/opal/ZSI/Makefile config.status: creating contrib/zlib/Makefile config.status: creating tools/Makefile config.status: creating tools/mesh/Makefile config.status: creating tools/manip/Makefile config.status: creating tools/python/Makefile config.status: creating tools/arpack/Makefile config.status: creating tools/python/vgrid/Makefile config.status: creating src/Makefile config.status: creating src/generic/Makefile config.status: creating src/mg/Makefile config.status: creating src/fem/Makefile config.status: creating src/aaa_inc/Makefile config.status: creating src/aaa_inc/apbs/Makefile config.status: creating src/aaa_lib/Makefile config.status: creating examples/Makefile config.status: creating examples/actin-dimer/Makefile config.status: creating examples/alkanes/Makefile config.status: creating examples/born/Makefile config.status: creating examples/FKBP/Makefile config.status: creating examples/hca-bind/Makefile config.status: creating examples/ion-pmf/Makefile config.status: creating examples/ion-protein/Makefile config.status: creating examples/ionize/Makefile config.status: creating examples/pka-lig/Makefile config.status: creating examples/point-pmf/Makefile config.status: creating examples/protein-rna/Makefile config.status: creating examples/smpbe/Makefile config.status: creating examples/solv/Makefile config.status: creating examples/opal/Makefile config.status: creating bin/Makefile config.status: creating bin/ApbsClient.py config.status: creating src/aaa_inc/apbscfg.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode configure: APBS to be compiled with following settings: /usr/bin/mpicc.openmpi -g -O2 APBS to be compiled with following settings: /usr/bin/mpif77.openmpi -g -O2 APBS to be linked with following libraries : -L/usr/lib/openmpi/lib -lmpi -lm -lblas APBS to be compiled with following includes: -I. -I/usr/include -I/usr/lib/openmpi/include Please type "make; make install" make[1]: Leaving directory `/build/buildd/apbs-1.3.0' dh_auto_build -a make[1]: Entering directory `/build/buildd/apbs-1.3.0' Making all in contrib make[2]: Entering directory `/build/buildd/apbs-1.3.0/contrib' Making all in pmgZ make[3]: Entering directory `/build/buildd/apbs-1.3.0/contrib/pmgZ' Making all in . make[4]: Entering directory `/build/buildd/apbs-1.3.0/contrib/pmgZ' /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o buildAd.lo buildAd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c buildAd.f -o buildAd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o buildBd.lo buildBd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c buildBd.f -o buildBd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o buildGd.lo buildGd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c buildGd.f -o buildGd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o buildPd.lo buildPd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c buildPd.f -o buildPd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o cgd.lo cgd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c cgd.f -o cgd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o cgmgd.lo cgmgd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c cgmgd.f -o cgmgd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o cgmgdrvd.lo cgmgdrvd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c cgmgdrvd.f -o cgmgdrvd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o dlphsubd.lo dlphsubd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c dlphsubd.f -o dlphsubd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o gsd.lo gsd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c gsd.f -o gsd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o mainsubd.lo mainsubd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c mainsubd.f -o mainsubd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o matvecd.lo matvecd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c matvecd.f -o matvecd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o mgcsd.lo mgcsd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c mgcsd.f -o mgcsd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o mgdrvd.lo mgdrvd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c mgdrvd.f -o mgdrvd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o mgfasd.lo mgfasd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c mgfasd.f -o mgfasd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o mgsubd.lo mgsubd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c mgsubd.f -o mgsubd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o mikpckd.lo mikpckd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c mikpckd.f -o mikpckd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o mlinpckd.lo mlinpckd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c mlinpckd.f -o mlinpckd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o ncgd.lo ncgd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c ncgd.f -o ncgd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o ncgdrvd.lo ncgdrvd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c ncgdrvd.f -o ncgdrvd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o newdrvd.lo newdrvd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c newdrvd.f -o newdrvd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o newtond.lo newtond.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c newtond.f -o newtond.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o ngsd.lo ngsd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c ngsd.f -o ngsd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o ngsdrvd.lo ngsdrvd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c ngsdrvd.f -o ngsdrvd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o ninterpd.lo ninterpd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c ninterpd.f -o ninterpd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o nrchd.lo nrchd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c nrchd.f -o nrchd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o nrchdrvd.lo nrchdrvd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c nrchdrvd.f -o nrchdrvd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o nsmoothd.lo nsmoothd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c nsmoothd.f -o nsmoothd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o nsord.lo nsord.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c nsord.f -o nsord.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o nsordrvd.lo nsordrvd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c nsordrvd.f -o nsordrvd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o nwjd.lo nwjd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c nwjd.f -o nwjd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o nwjdrvd.lo nwjdrvd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c nwjdrvd.f -o nwjdrvd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o powerd.lo powerd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c powerd.f -o powerd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o rchd.lo rchd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c rchd.f -o rchd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o smoothd.lo smoothd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c smoothd.f -o smoothd.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o sord.lo sord.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c sord.f -o sord.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o wjd.lo wjd.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c wjd.f -o wjd.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/fem -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o gsdc.lo gsdc.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/fem -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c gsdc.c -o gsdc.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/fem -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o nsordrvdc.lo nsordrvdc.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/fem -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c nsordrvdc.c -o nsordrvdc.o /bin/bash ../../libtool --tag=F77 --mode=link /usr/bin/mpif77.openmpi -g -O2 -o libapbspmgz.la buildAd.lo buildBd.lo buildGd.lo buildPd.lo cgd.lo cgmgd.lo cgmgdrvd.lo dlphsubd.lo gsd.lo mainsubd.lo matvecd.lo mgcsd.lo mgdrvd.lo mgfasd.lo mgsubd.lo mikpckd.lo mlinpckd.lo ncgd.lo ncgdrvd.lo newdrvd.lo newtond.lo ngsd.lo ngsdrvd.lo ninterpd.lo nrchd.lo nrchdrvd.lo nsmoothd.lo nsord.lo nsordrvd.lo nwjd.lo nwjdrvd.lo powerd.lo rchd.lo smoothd.lo sord.lo wjd.lo gsdc.lo nsordrvdc.lo libtool: link: ar cru .libs/libapbspmgz.a buildAd.o buildBd.o buildGd.o buildPd.o cgd.o cgmgd.o cgmgdrvd.o dlphsubd.o gsd.o mainsubd.o matvecd.o mgcsd.o mgdrvd.o mgfasd.o mgsubd.o mikpckd.o mlinpckd.o ncgd.o ncgdrvd.o newdrvd.o newtond.o ngsd.o ngsdrvd.o ninterpd.o nrchd.o nrchdrvd.o nsmoothd.o nsord.o nsordrvd.o nwjd.o nwjdrvd.o powerd.o rchd.o smoothd.o sord.o wjd.o gsdc.o nsordrvdc.o libtool: link: ranlib .libs/libapbspmgz.a libtool: link: ( cd ".libs" && rm -f "libapbspmgz.la" && ln -s "../libapbspmgz.la" "libapbspmgz.la" ) cp -p ../../src/mg/apbs/*.h ../../src/aaa_inc/apbs/. make[4]: Leaving directory `/build/buildd/apbs-1.3.0/contrib/pmgZ' make[3]: Leaving directory `/build/buildd/apbs-1.3.0/contrib/pmgZ' Making all in aqua make[3]: Entering directory `/build/buildd/apbs-1.3.0/contrib/aqua' Making all in . make[4]: Entering directory `/build/buildd/apbs-1.3.0/contrib/aqua' /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o Blaswrapper.lo Blaswrapper.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c Blaswrapper.f -o Blaswrapper.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o Cartesian_grid.lo Cartesian_grid.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c Cartesian_grid.f -o Cartesian_grid.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o CGMG_Solver.lo CGMG_Solver.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c CGMG_Solver.f -o CGMG_Solver.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o Galerkin.lo Galerkin.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c Galerkin.f -o Galerkin.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o LinMG.lo LinMG.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c LinMG.f -o LinMG.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o MatVect.lo MatVect.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c MatVect.f -o MatVect.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o Newton_Solver_pbe.lo Newton_Solver_pbe.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c Newton_Solver_pbe.f -o Newton_Solver_pbe.o Newton_Solver_pbe.f:339.20: 2 mgsolv,iok,iinfo,epsilon,errtol,omegan,nu1,nu2, 1 Warning: Type mismatch in argument 'epsilon' at (1); passed INTEGER(4) to REAL(8) Newton_Solver_pbe.f:421.13: 2 iokd,iinfo,epsilon,errd,omega,nu1,nu2,mgsmoo, 1 Warning: Type mismatch in argument 'epsilon' at (1); passed INTEGER(4) to REAL(8) Newton_Solver_pbe.f:438.11: 2 iok,iinfo,epsilon,errtol,omega,nu1,nu2,mgsmoo, 1 Warning: Type mismatch in argument 'epsilon' at (1); passed INTEGER(4) to REAL(8) Newton_Solver_pbe.f:344.20: 2 mgsolv,iok,iinfo,epsilon,errtol,omegan,nu1,nu2, 1 Warning: Type mismatch in argument 'epsilon' at (1); passed INTEGER(4) to REAL(8) /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o Smoothing.lo Smoothing.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c Smoothing.f -o Smoothing.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o PrintInfo.lo PrintInfo.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c PrintInfo.f -o PrintInfo.o /bin/bash ../../libtool --tag=F77 --mode=link /usr/bin/mpif77.openmpi -g -O2 -o libapbsaqua.la Blaswrapper.lo Cartesian_grid.lo CGMG_Solver.lo Galerkin.lo LinMG.lo MatVect.lo Newton_Solver_pbe.lo Smoothing.lo PrintInfo.lo libtool: link: ar cru .libs/libapbsaqua.a Blaswrapper.o Cartesian_grid.o CGMG_Solver.o Galerkin.o LinMG.o MatVect.o Newton_Solver_pbe.o Smoothing.o PrintInfo.o libtool: link: ranlib .libs/libapbsaqua.a libtool: link: ( cd ".libs" && rm -f "libapbsaqua.la" && ln -s "../libapbsaqua.la" "libapbsaqua.la" ) make[4]: Leaving directory `/build/buildd/apbs-1.3.0/contrib/aqua' make[3]: Leaving directory `/build/buildd/apbs-1.3.0/contrib/aqua' Making all in opal make[3]: Entering directory `/build/buildd/apbs-1.3.0/contrib/opal' Making all in ZSI make[4]: Entering directory `/build/buildd/apbs-1.3.0/contrib/opal/ZSI' Making all in . make[5]: Entering directory `/build/buildd/apbs-1.3.0/contrib/opal/ZSI' make[5]: Nothing to be done for `all-am'. make[5]: Leaving directory `/build/buildd/apbs-1.3.0/contrib/opal/ZSI' make[4]: Leaving directory `/build/buildd/apbs-1.3.0/contrib/opal/ZSI' Making all in . make[4]: Entering directory `/build/buildd/apbs-1.3.0/contrib/opal' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/build/buildd/apbs-1.3.0/contrib/opal' make[3]: Leaving directory `/build/buildd/apbs-1.3.0/contrib/opal' Making all in . make[3]: Entering directory `/build/buildd/apbs-1.3.0/contrib' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/apbs-1.3.0/contrib' make[2]: Leaving directory `/build/buildd/apbs-1.3.0/contrib' Making all in src make[2]: Entering directory `/build/buildd/apbs-1.3.0/src' Making all in generic make[3]: Entering directory `/build/buildd/apbs-1.3.0/src/generic' Making all in . make[4]: Entering directory `/build/buildd/apbs-1.3.0/src/generic' /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o nosh.lo nosh.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c nosh.c -o nosh.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o mgparm.lo mgparm.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c mgparm.c -o mgparm.o mgparm.c: In function 'MGparm_parseCHGM': mgparm.c:448:5: warning: format '%d' expects argument of type 'int *', but argument 3 has type 'enum Vchrg_Meth *' [-Wformat=] if (sscanf(tok, "%d", &ti) == 1) { ^ /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o femparm.lo femparm.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c femparm.c -o femparm.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o pbeparm.lo pbeparm.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c pbeparm.c -o pbeparm.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o apolparm.lo apolparm.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c apolparm.c -o apolparm.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o vacc.lo vacc.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c vacc.c -o vacc.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o valist.lo valist.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c valist.c -o valist.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o vatom.lo vatom.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c vatom.c -o vatom.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o vgreen.lo vgreen.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c vgreen.c -o vgreen.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o vpbe.lo vpbe.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c vpbe.c -o vpbe.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o vcap.lo vcap.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c vcap.c -o vcap.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o vclist.lo vclist.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c vclist.c -o vclist.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o vstring.lo vstring.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c vstring.c -o vstring.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o vparam.lo vparam.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/fem -I../../src/mg -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c vparam.c -o vparam.o /bin/bash ../../libtool --tag=CC --mode=link /usr/bin/mpicc.openmpi -g -O2 -g -O2 -o libapbsgen.la nosh.lo mgparm.lo femparm.lo pbeparm.lo apolparm.lo vacc.lo valist.lo vatom.lo vgreen.lo vpbe.lo vcap.lo vclist.lo vstring.lo vparam.lo libtool: link: ar cru .libs/libapbsgen.a nosh.o mgparm.o femparm.o pbeparm.o apolparm.o vacc.o valist.o vatom.o vgreen.o vpbe.o vcap.o vclist.o vstring.o vparam.o libtool: link: ranlib .libs/libapbsgen.a libtool: link: ( cd ".libs" && rm -f "libapbsgen.la" && ln -s "../libapbsgen.la" "libapbsgen.la" ) cp -p ../../src/generic/apbs/*.h ../../src/aaa_inc/apbs/. make[4]: Leaving directory `/build/buildd/apbs-1.3.0/src/generic' make[3]: Leaving directory `/build/buildd/apbs-1.3.0/src/generic' Making all in mg make[3]: Entering directory `/build/buildd/apbs-1.3.0/src/mg' Making all in . make[4]: Entering directory `/build/buildd/apbs-1.3.0/src/mg' /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/fem -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o vpmg.lo vpmg.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/fem -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c vpmg.c -o vpmg.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/fem -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o vpmgp.lo vpmgp.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/fem -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c vpmgp.c -o vpmgp.o /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o mypde.lo mypde.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c mypde.f -o mypde.o mypde.f:213.21: common /MYPDEF/ charge, sconc 1 Warning: Named COMMON block 'mypdef' at (1) shall be of the same size as elsewhere (808 vs 872 bytes) mypde.f:263.21: common /MYPDEF/ charge 1 Warning: Named COMMON block 'mypdef' at (1) shall be of the same size as elsewhere (808 vs 872 bytes) mypde.f:306.21: common /MYPDEF/ charge 1 Warning: Named COMMON block 'mypdef' at (1) shall be of the same size as elsewhere (808 vs 872 bytes) /bin/bash ../../libtool --tag=F77 --mode=compile /usr/bin/mpif77.openmpi -g -O2 -c -o vpmgf.lo vpmgf.f libtool: compile: /usr/bin/mpif77.openmpi -g -O2 -c vpmgf.f -o vpmgf.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/fem -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o vmgrid.lo vmgrid.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/fem -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c vmgrid.c -o vmgrid.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/fem -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o vgrid.lo vgrid.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/fem -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c vgrid.c -o vgrid.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/fem -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o vopot.lo vopot.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/fem -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c vopot.c -o vopot.o /bin/bash ../../libtool --tag=F77 --mode=link /usr/bin/mpif77.openmpi -g -O2 -o libapbsmg.la vpmg.lo vpmgp.lo mypde.lo vpmgf.lo vmgrid.lo vgrid.lo vopot.lo libtool: link: ar cru .libs/libapbsmg.a vpmg.o vpmgp.o mypde.o vpmgf.o vmgrid.o vgrid.o vopot.o libtool: link: ranlib .libs/libapbsmg.a libtool: link: ( cd ".libs" && rm -f "libapbsmg.la" && ln -s "../libapbsmg.la" "libapbsmg.la" ) cp -p ../../src/mg/apbs/*.h ../../src/aaa_inc/apbs/. make[4]: Leaving directory `/build/buildd/apbs-1.3.0/src/mg' make[3]: Leaving directory `/build/buildd/apbs-1.3.0/src/mg' Making all in fem make[3]: Entering directory `/build/buildd/apbs-1.3.0/src/fem' Making all in . make[4]: Entering directory `/build/buildd/apbs-1.3.0/src/fem' /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/mg -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o vfetk.lo vfetk.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/mg -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c vfetk.c -o vfetk.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/mg -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o vcsm.lo vcsm.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/mg -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c vcsm.c -o vcsm.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/mg -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o vpee.lo vpee.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/mg -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c vpee.c -o vpee.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/mg -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c -o dummy.lo dummy.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/mg -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c dummy.c -o dummy.o /bin/bash ../../libtool --tag=CC --mode=link /usr/bin/mpicc.openmpi -g -O2 -g -O2 -o libapbsfem.la vfetk.lo vcsm.lo vpee.lo dummy.lo libtool: link: ar cru .libs/libapbsfem.a vfetk.o vcsm.o vpee.o dummy.o libtool: link: ranlib .libs/libapbsfem.a libtool: link: ( cd ".libs" && rm -f "libapbsfem.la" && ln -s "../libapbsfem.la" "libapbsfem.la" ) cp -p ../../src/fem/apbs/*.h ../../src/aaa_inc/apbs/. make[4]: Leaving directory `/build/buildd/apbs-1.3.0/src/fem' make[3]: Leaving directory `/build/buildd/apbs-1.3.0/src/fem' Making all in aaa_inc make[3]: Entering directory `/build/buildd/apbs-1.3.0/src/aaa_inc' make all-recursive make[4]: Entering directory `/build/buildd/apbs-1.3.0/src/aaa_inc' Making all in apbs make[5]: Entering directory `/build/buildd/apbs-1.3.0/src/aaa_inc/apbs' Making all in . make[6]: Entering directory `/build/buildd/apbs-1.3.0/src/aaa_inc/apbs' make[6]: Nothing to be done for `all-am'. make[6]: Leaving directory `/build/buildd/apbs-1.3.0/src/aaa_inc/apbs' make[5]: Leaving directory `/build/buildd/apbs-1.3.0/src/aaa_inc/apbs' Making all in . make[5]: Entering directory `/build/buildd/apbs-1.3.0/src/aaa_inc' make[5]: Leaving directory `/build/buildd/apbs-1.3.0/src/aaa_inc' make[4]: Leaving directory `/build/buildd/apbs-1.3.0/src/aaa_inc' make[3]: Leaving directory `/build/buildd/apbs-1.3.0/src/aaa_inc' Making all in aaa_lib make[3]: Entering directory `/build/buildd/apbs-1.3.0/src/aaa_lib' Making all in . make[4]: Entering directory `/build/buildd/apbs-1.3.0/src/aaa_lib' /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/mg -I../../src/fem -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -c -o apbs_link.lo apbs_link.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I../../src/generic -I../../src/mg -I../../src/fem -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -c apbs_link.c -o apbs_link.o /bin/bash ../../libtool --tag=CC --mode=link /usr/bin/mpicc.openmpi -g -O2 -version-info 1:3 -o libapbs.la -rpath /usr/lib apbs_link.lo ../../src/generic/libapbsgen.la ../../src/fem/libapbsfem.la ../../src/mg/libapbsmg.la ../../contrib/pmgZ/libapbspmgz.la ../../contrib/aqua/libapbsaqua.la @blas_lib@ libtool: link: (cd .libs/libapbs.lax/libapbsgen.a && ar x "/build/buildd/apbs-1.3.0/src/aaa_lib/../../src/generic/.libs/libapbsgen.a") libtool: link: (cd .libs/libapbs.lax/libapbsfem.a && ar x "/build/buildd/apbs-1.3.0/src/aaa_lib/../../src/fem/.libs/libapbsfem.a") libtool: link: (cd .libs/libapbs.lax/libapbsmg.a && ar x "/build/buildd/apbs-1.3.0/src/aaa_lib/../../src/mg/.libs/libapbsmg.a") libtool: link: (cd .libs/libapbs.lax/libapbspmgz.a && ar x "/build/buildd/apbs-1.3.0/src/aaa_lib/../../contrib/pmgZ/.libs/libapbspmgz.a") libtool: link: (cd .libs/libapbs.lax/libapbsaqua.a && ar x "/build/buildd/apbs-1.3.0/src/aaa_lib/../../contrib/aqua/.libs/libapbsaqua.a") libtool: link: ar cru .libs/libapbs.a apbs_link.o .libs/libapbs.lax/libapbsgen.a/apolparm.o .libs/libapbs.lax/libapbsgen.a/femparm.o .libs/libapbs.lax/libapbsgen.a/mgparm.o .libs/libapbs.lax/libapbsgen.a/nosh.o .libs/libapbs.lax/libapbsgen.a/pbeparm.o .libs/libapbs.lax/libapbsgen.a/vacc.o .libs/libapbs.lax/libapbsgen.a/valist.o .libs/libapbs.lax/libapbsgen.a/vatom.o .libs/libapbs.lax/libapbsgen.a/vcap.o .libs/libapbs.lax/libapbsgen.a/vclist.o .libs/libapbs.lax/libapbsgen.a/vgreen.o .libs/libapbs.lax/libapbsgen.a/vparam.o .libs/libapbs.lax/libapbsgen.a/vpbe.o .libs/libapbs.lax/libapbsgen.a/vstring.o .libs/libapbs.lax/libapbsfem.a/dummy.o .libs/libapbs.lax/libapbsfem.a/vcsm.o .libs/libapbs.lax/libapbsfem.a/vfetk.o .libs/libapbs.lax/libapbsfem.a/vpee.o 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.libs/libapbs.lax/libapbspmgz.a/mlinpckd.o .libs/libapbs.lax/libapbspmgz.a/ncgd.o .libs/libapbs.lax/libapbspmgz.a/ncgdrvd.o .libs/libapbs.lax/libapbspmgz.a/newdrvd.o .libs/libapbs.lax/libapbspmgz.a/newtond.o .libs/libapbs.lax/libapbspmgz.a/ngsd.o .libs/libapbs.lax/libapbspmgz.a/ngsdrvd.o .libs/libapbs.lax/libapbspmgz.a/ninterpd.o .libs/libapbs.lax/libapbspmgz.a/nrchd.o .libs/libapbs.lax/libapbspmgz.a/nrchdrvd.o .libs/libapbs.lax/libapbspmgz.a/nsmoothd.o .libs/libapbs.lax/libapbspmgz.a/nsord.o .libs/libapbs.lax/libapbspmgz.a/nsordrvd.o .libs/libapbs.lax/libapbspmgz.a/nsordrvdc.o .libs/libapbs.lax/libapbspmgz.a/nwjd.o .libs/libapbs.lax/libapbspmgz.a/nwjdrvd.o .libs/libapbs.lax/libapbspmgz.a/powerd.o .libs/libapbs.lax/libapbspmgz.a/rchd.o .libs/libapbs.lax/libapbspmgz.a/smoothd.o .libs/libapbs.lax/libapbspmgz.a/sord.o .libs/libapbs.lax/libapbspmgz.a/wjd.o .libs/libapbs.lax/libapbsaqua.a/Blaswrapper.o .libs/libapbs.lax/libapbsaqua.a/CGMG_Solver.o .libs/libapbs.lax/libapbsaqua.a/Cartesian_grid.o .libs/libapbs.lax/libapbsaqua.a/Galerkin.o .libs/libapbs.lax/libapbsaqua.a/LinMG.o .libs/libapbs.lax/libapbsaqua.a/MatVect.o .libs/libapbs.lax/libapbsaqua.a/Newton_Solver_pbe.o .libs/libapbs.lax/libapbsaqua.a/PrintInfo.o .libs/libapbs.lax/libapbsaqua.a/Smoothing.o libtool: link: ranlib .libs/libapbs.a libtool: link: rm -fr .libs/libapbs.lax libtool: link: ( cd ".libs" && rm -f "libapbs.la" && ln -s "../libapbs.la" "libapbs.la" ) make[4]: Leaving directory `/build/buildd/apbs-1.3.0/src/aaa_lib' make[3]: Leaving directory `/build/buildd/apbs-1.3.0/src/aaa_lib' Making all in . make[3]: Entering directory `/build/buildd/apbs-1.3.0/src' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/apbs-1.3.0/src' make[2]: Leaving directory `/build/buildd/apbs-1.3.0/src' Making all in bin make[2]: Entering directory `/build/buildd/apbs-1.3.0/bin' rm -f apbs make all-am make[3]: Entering directory `/build/buildd/apbs-1.3.0/bin' /bin/bash ../libtool --tag=CC --mode=compile /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -c -o routines.lo routines.c libtool: compile: /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -c routines.c -o routines.o /bin/bash ../libtool --tag=CC --mode=link /usr/bin/mpif77.openmpi -g -O2 -g -O2 -version-info 1:3 -o libapbsmainroutines.la -rpath /usr/lib routines.lo libtool: link: ar cru .libs/libapbsmainroutines.a routines.o libtool: link: ranlib .libs/libapbsmainroutines.a libtool: link: ( cd ".libs" && rm -f "libapbsmainroutines.la" && ln -s "../libapbsmainroutines.la" "libapbsmainroutines.la" ) /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -c main.c /bin/bash ../libtool --tag=CC --mode=link /usr/bin/mpif77.openmpi -g -O2 -g -O2 -g -O2 -o apbs main.o /build/buildd/apbs-1.3.0/bin/libapbsmainroutines.la /build/buildd/apbs-1.3.0/src/aaa_lib/libapbs.la -L/usr/lib -lmaloc -L/usr/lib/openmpi/lib -lmpi -lm -lblas libtool: link: warning: library `/usr/lib/libmaloc.la' was moved. libtool: link: warning: library `/usr/lib/libmaloc.la' was moved. libtool: link: /usr/bin/mpif77.openmpi -g -O2 -g -O2 -g -O2 -o apbs main.o /build/buildd/apbs-1.3.0/bin/.libs/libapbsmainroutines.a /build/buildd/apbs-1.3.0/src/aaa_lib/.libs/libapbs.a -L/usr/lib /usr/lib/libmaloc.so -L/usr/lib/openmpi/lib -lmpi -lm -lblas make[3]: Leaving directory `/build/buildd/apbs-1.3.0/bin' make[2]: Leaving directory `/build/buildd/apbs-1.3.0/bin' Making all in tools make[2]: Entering directory `/build/buildd/apbs-1.3.0/tools' Making all in mesh make[3]: Entering directory `/build/buildd/apbs-1.3.0/tools/mesh' /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c mgmesh.c /bin/bash ../../libtool --tag=CC --mode=link /usr/bin/mpicc.openmpi -g -O2 -g -O2 ../../src/aaa_lib/libapbs.la /build/buildd/apbs-1.3.0/bin/libapbsmainroutines.la /build/buildd/apbs-1.3.0/src/aaa_lib/libapbs.la -L/usr/lib -lmaloc -L/usr/lib/openmpi/lib -lmpi -lm -lblas -o mgmesh mgmesh.o ../../src/aaa_lib/libapbs.la /build/buildd/apbs-1.3.0/bin/libapbsmainroutines.la /build/buildd/apbs-1.3.0/src/aaa_lib/libapbs.la -L/usr/lib -lmaloc -L/usr/lib/openmpi/lib -lmpi -lm -lblas libtool: link: warning: library `/usr/lib/libmaloc.la' was moved. libtool: link: warning: library `/usr/lib/libmaloc.la' was moved. libtool: link: /usr/bin/mpicc.openmpi -g -O2 -g -O2 -o mgmesh mgmesh.o -L/usr/lib -L/usr/lib/openmpi/lib ../../src/aaa_lib/.libs/libapbs.a /build/buildd/apbs-1.3.0/bin/.libs/libapbsmainroutines.a /build/buildd/apbs-1.3.0/src/aaa_lib/.libs/libapbs.a /usr/lib/libmaloc.so -lmpi -lm -lblas /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c dxmath.c /bin/bash ../../libtool --tag=CC --mode=link /usr/bin/mpicc.openmpi -g -O2 -g -O2 -o dxmath dxmath.o ../../src/aaa_lib/libapbs.la /build/buildd/apbs-1.3.0/bin/libapbsmainroutines.la /build/buildd/apbs-1.3.0/src/aaa_lib/libapbs.la -L/usr/lib -lmaloc -L/usr/lib/openmpi/lib -lmpi -lm -lblas libtool: link: warning: library `/usr/lib/libmaloc.la' was moved. libtool: link: warning: library `/usr/lib/libmaloc.la' was moved. libtool: link: /usr/bin/mpicc.openmpi -g -O2 -g -O2 -o dxmath dxmath.o ../../src/aaa_lib/.libs/libapbs.a /build/buildd/apbs-1.3.0/bin/.libs/libapbsmainroutines.a /build/buildd/apbs-1.3.0/src/aaa_lib/.libs/libapbs.a -L/usr/lib /usr/lib/libmaloc.so -L/usr/lib/openmpi/lib -lmpi -lm -lblas /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c mergedx.c /bin/bash ../../libtool --tag=CC --mode=link /usr/bin/mpicc.openmpi -g -O2 -g -O2 ../../src/aaa_lib/libapbs.la /build/buildd/apbs-1.3.0/bin/libapbsmainroutines.la /build/buildd/apbs-1.3.0/src/aaa_lib/libapbs.la -L/usr/lib -lmaloc -L/usr/lib/openmpi/lib -lmpi -lm -lblas -o mergedx mergedx.o ../../src/aaa_lib/libapbs.la /build/buildd/apbs-1.3.0/bin/libapbsmainroutines.la /build/buildd/apbs-1.3.0/src/aaa_lib/libapbs.la -L/usr/lib -lmaloc -L/usr/lib/openmpi/lib -lmpi -lm -lblas libtool: link: warning: library `/usr/lib/libmaloc.la' was moved. libtool: link: warning: library `/usr/lib/libmaloc.la' was moved. libtool: link: /usr/bin/mpicc.openmpi -g -O2 -g -O2 -o mergedx mergedx.o -L/usr/lib -L/usr/lib/openmpi/lib ../../src/aaa_lib/.libs/libapbs.a /build/buildd/apbs-1.3.0/bin/.libs/libapbsmainroutines.a /build/buildd/apbs-1.3.0/src/aaa_lib/.libs/libapbs.a /usr/lib/libmaloc.so -lmpi -lm -lblas /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c mergedx2.c /bin/bash ../../libtool --tag=CC --mode=link /usr/bin/mpicc.openmpi -g -O2 -g -O2 ../../src/aaa_lib/libapbs.la /build/buildd/apbs-1.3.0/bin/libapbsmainroutines.la /build/buildd/apbs-1.3.0/src/aaa_lib/libapbs.la -L/usr/lib -lmaloc -L/usr/lib/openmpi/lib -lmpi -lm -lblas -o mergedx2 mergedx2.o ../../src/aaa_lib/libapbs.la /build/buildd/apbs-1.3.0/bin/libapbsmainroutines.la /build/buildd/apbs-1.3.0/src/aaa_lib/libapbs.la -L/usr/lib -lmaloc -L/usr/lib/openmpi/lib -lmpi -lm -lblas libtool: link: warning: library `/usr/lib/libmaloc.la' was moved. libtool: link: warning: library `/usr/lib/libmaloc.la' was moved. libtool: link: /usr/bin/mpicc.openmpi -g -O2 -g -O2 -o mergedx2 mergedx2.o -L/usr/lib -L/usr/lib/openmpi/lib ../../src/aaa_lib/.libs/libapbs.a /build/buildd/apbs-1.3.0/bin/.libs/libapbsmainroutines.a /build/buildd/apbs-1.3.0/src/aaa_lib/.libs/libapbs.a /usr/lib/libmaloc.so -lmpi -lm -lblas /usr/bin/mpif77.openmpi -g -O2 -c -o uhbd_asc2bin.o uhbd_asc2bin.f /bin/bash ../../libtool --tag=F77 --mode=link /usr/bin/mpif77.openmpi -g -O2 -g -O2 -o uhbd_asc2bin uhbd_asc2bin.o ../../src/aaa_lib/libapbs.la /build/buildd/apbs-1.3.0/bin/libapbsmainroutines.la /build/buildd/apbs-1.3.0/src/aaa_lib/libapbs.la -L/usr/lib -lmaloc -L/usr/lib/openmpi/lib -lmpi -lm -lblas libtool: link: warning: library `/usr/lib/libmaloc.la' was moved. libtool: link: warning: library `/usr/lib/libmaloc.la' was moved. libtool: link: /usr/bin/mpif77.openmpi -g -O2 -g -O2 -o uhbd_asc2bin uhbd_asc2bin.o ../../src/aaa_lib/.libs/libapbs.a /build/buildd/apbs-1.3.0/bin/.libs/libapbsmainroutines.a /build/buildd/apbs-1.3.0/src/aaa_lib/.libs/libapbs.a -L/usr/lib /usr/lib/libmaloc.so -L/usr/lib/openmpi/lib -lmpi -lm -lblas /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c smooth.c /bin/bash ../../libtool --tag=CC --mode=link /usr/bin/mpicc.openmpi -g -O2 -g -O2 ../../src/aaa_lib/libapbs.la /build/buildd/apbs-1.3.0/bin/libapbsmainroutines.la /build/buildd/apbs-1.3.0/src/aaa_lib/libapbs.la -L/usr/lib -lmaloc -L/usr/lib/openmpi/lib -lmpi -lm -lblas -o smooth smooth.o ../../src/aaa_lib/libapbs.la /build/buildd/apbs-1.3.0/bin/libapbsmainroutines.la /build/buildd/apbs-1.3.0/src/aaa_lib/libapbs.la -L/usr/lib -lmaloc -L/usr/lib/openmpi/lib -lmpi -lm -lblas libtool: link: warning: library `/usr/lib/libmaloc.la' was moved. libtool: link: warning: library `/usr/lib/libmaloc.la' was moved. libtool: link: /usr/bin/mpicc.openmpi -g -O2 -g -O2 -o smooth smooth.o -L/usr/lib -L/usr/lib/openmpi/lib ../../src/aaa_lib/.libs/libapbs.a /build/buildd/apbs-1.3.0/bin/.libs/libapbsmainroutines.a /build/buildd/apbs-1.3.0/src/aaa_lib/.libs/libapbs.a /usr/lib/libmaloc.so -lmpi -lm -lblas /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c value.c /bin/bash ../../libtool --tag=CC --mode=link /usr/bin/mpicc.openmpi -g -O2 -g -O2 -o value value.o ../../src/aaa_lib/libapbs.la /build/buildd/apbs-1.3.0/bin/libapbsmainroutines.la /build/buildd/apbs-1.3.0/src/aaa_lib/libapbs.la -L/usr/lib -lmaloc -L/usr/lib/openmpi/lib -lmpi -lm -lblas libtool: link: warning: library `/usr/lib/libmaloc.la' was moved. libtool: link: warning: library `/usr/lib/libmaloc.la' was moved. libtool: link: /usr/bin/mpicc.openmpi -g -O2 -g -O2 -o value value.o ../../src/aaa_lib/.libs/libapbs.a /build/buildd/apbs-1.3.0/bin/.libs/libapbsmainroutines.a /build/buildd/apbs-1.3.0/src/aaa_lib/.libs/libapbs.a -L/usr/lib /usr/lib/libmaloc.so -L/usr/lib/openmpi/lib -lmpi -lm -lblas /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c dx2mol.c /bin/bash ../../libtool --tag=CC --mode=link /usr/bin/mpicc.openmpi -g -O2 -g -O2 -o dx2mol dx2mol.o ../../src/aaa_lib/libapbs.la /build/buildd/apbs-1.3.0/bin/libapbsmainroutines.la /build/buildd/apbs-1.3.0/src/aaa_lib/libapbs.la -L/usr/lib -lmaloc -L/usr/lib/openmpi/lib -lmpi -lm -lblas libtool: link: warning: library `/usr/lib/libmaloc.la' was moved. libtool: link: warning: library `/usr/lib/libmaloc.la' was moved. libtool: link: /usr/bin/mpicc.openmpi -g -O2 -g -O2 -o dx2mol dx2mol.o ../../src/aaa_lib/.libs/libapbs.a /build/buildd/apbs-1.3.0/bin/.libs/libapbsmainroutines.a /build/buildd/apbs-1.3.0/src/aaa_lib/.libs/libapbs.a -L/usr/lib /usr/lib/libmaloc.so -L/usr/lib/openmpi/lib -lmpi -lm -lblas /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c dx2uhbd.c /bin/bash ../../libtool --tag=CC --mode=link /usr/bin/mpicc.openmpi -g -O2 -g -O2 -o dx2uhbd dx2uhbd.o ../../src/aaa_lib/libapbs.la /build/buildd/apbs-1.3.0/bin/libapbsmainroutines.la /build/buildd/apbs-1.3.0/src/aaa_lib/libapbs.la -L/usr/lib -lmaloc -L/usr/lib/openmpi/lib -lmpi -lm -lblas libtool: link: warning: library `/usr/lib/libmaloc.la' was moved. libtool: link: warning: library `/usr/lib/libmaloc.la' was moved. libtool: link: /usr/bin/mpicc.openmpi -g -O2 -g -O2 -o dx2uhbd dx2uhbd.o ../../src/aaa_lib/.libs/libapbs.a /build/buildd/apbs-1.3.0/bin/.libs/libapbsmainroutines.a /build/buildd/apbs-1.3.0/src/aaa_lib/.libs/libapbs.a -L/usr/lib /usr/lib/libmaloc.so -L/usr/lib/openmpi/lib -lmpi -lm -lblas /usr/bin/mpicc.openmpi -DHAVE_CONFIG_H -I. -I../../src/aaa_inc -I. -I/usr/include -I/usr/lib/openmpi/include -g -O2 -g -O2 -c benchmark.c /bin/bash ../../libtool --tag=CC --mode=link /usr/bin/mpicc.openmpi -g -O2 -g -O2 -o benchmark benchmark.o ../../src/aaa_lib/libapbs.la /build/buildd/apbs-1.3.0/bin/libapbsmainroutines.la /build/buildd/apbs-1.3.0/src/aaa_lib/libapbs.la -L/usr/lib -lmaloc -L/usr/lib/openmpi/lib -lmpi -lm -lblas libtool: link: warning: library `/usr/lib/libmaloc.la' was moved. libtool: link: warning: library `/usr/lib/libmaloc.la' was moved. libtool: link: /usr/bin/mpicc.openmpi -g -O2 -g -O2 -o benchmark benchmark.o ../../src/aaa_lib/.libs/libapbs.a /build/buildd/apbs-1.3.0/bin/.libs/libapbsmainroutines.a /build/buildd/apbs-1.3.0/src/aaa_lib/.libs/libapbs.a -L/usr/lib /usr/lib/libmaloc.so -L/usr/lib/openmpi/lib -lmpi -lm -lblas /usr/lib/libmaloc.so: undefined reference to `pow' collect2: error: ld returned 1 exit status make[3]: *** [benchmark] Error 1 make[3]: Leaving directory `/build/buildd/apbs-1.3.0/tools/mesh' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/build/buildd/apbs-1.3.0/tools' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/build/buildd/apbs-1.3.0' dh_auto_build: make -j1 returned exit code 2 make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ****************************************************************************** Build finished at 20130918-0804 FAILED [dpkg-buildpackage died] ****************************************************************************** Finished at 20130918-0804 Build needed 00:05:01, 100488k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-4982860'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-4982860/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-4982860'] Unmounting chroot for build PACKAGEBUILD-4982860... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-4982860'] Removing build PACKAGEBUILD-4982860