RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux kishi12 3.2.0-84-highbank #121-Ubuntu SMP PREEMPT Tue May 5 19:44:15 UTC 2015 armv7l Buildd toolchain package versions: launchpad-buildd_134 python-lpbuildd_134 sbuild_0.65.2-1ubuntu2~ubuntu12.04.1~ppa6 bzr_2.5.1-0ubuntu2 dpkg-dev_1.16.1.2ubuntu7.6 python-debian_0.1.27ubuntu1~ubuntu12.04.1~ppa2. Syncing the system clock with the buildd NTP service... 6 Oct 09:05:16 ntpdate[3741]: adjust time server 10.211.37.1 offset -0.000001 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-8056759', '/home/buildd/filecache-default/de2a4ec0d12e90f099fc9f338c37f2dad886aa01'] Unpacking chroot for build PACKAGEBUILD-8056759 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-8056759'] Mounting chroot for build PACKAGEBUILD-8056759 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-8056759', 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu wily main', 'deb http://ftpmaster.internal/ubuntu wily main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu wily-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu wily-updates main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-8056759 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-8056759', 'armhf'] Updating debian chroot for build PACKAGEBUILD-8056759 Ign http://ftpmaster.internal wily InRelease Ign http://archive-team.internal wily InRelease Ign http://ftpmaster.internal wily-security InRelease Ign http://ftpmaster.internal wily-updates InRelease Ign http://archive-team.internal wily Release.gpg Get:1 http://ppa.launchpad.net wily InRelease [15.4 kB] Get:2 http://ftpmaster.internal wily Release.gpg [933 B] Hit http://archive-team.internal wily Release Get:3 http://ftpmaster.internal wily-security Release.gpg [933 B] Get:4 http://ftpmaster.internal wily-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal wily Release [217 kB] Ign http://archive-team.internal wily/main armhf Packages/DiffIndex Ign http://ppa.launchpad.net wily InRelease Get:6 http://ppa.launchpad.net wily/main armhf Packages [679 B] Get:7 http://ppa.launchpad.net wily/main Translation-en [788 B] Get:8 http://ftpmaster.internal wily-security Release [63.5 kB] Ign http://archive-team.internal wily/main Translation-en Hit http://archive-team.internal wily/main armhf Packages Get:9 http://ftpmaster.internal wily-updates Release [63.5 kB] Get:10 http://ftpmaster.internal wily/main armhf Packages [1393 kB] Get:11 http://ftpmaster.internal wily/restricted armhf Packages [7572 B] Get:12 http://ftpmaster.internal wily/universe armhf Packages [6619 kB] Get:13 http://ftpmaster.internal wily/multiverse armhf Packages [118 kB] Get:14 http://ftpmaster.internal wily/main Translation-en [838 kB] Get:15 http://ftpmaster.internal wily/multiverse Translation-en [107 kB] Get:16 http://ftpmaster.internal wily/restricted Translation-en [4296 B] Get:17 http://ftpmaster.internal wily/universe Translation-en [4601 kB] Get:18 http://ftpmaster.internal wily-security/main armhf Packages [28 B] Get:19 http://ftpmaster.internal wily-security/restricted armhf Packages [28 B] Get:20 http://ftpmaster.internal wily-security/universe armhf Packages [28 B] Get:21 http://ftpmaster.internal wily-security/multiverse armhf Packages [28 B] Get:22 http://ftpmaster.internal wily-security/main Translation-en [28 B] Get:23 http://ftpmaster.internal wily-security/multiverse Translation-en [28 B] Get:24 http://ftpmaster.internal wily-security/restricted Translation-en [28 B] Get:25 http://ftpmaster.internal wily-security/universe Translation-en [28 B] Get:26 http://ftpmaster.internal wily-updates/main armhf Packages [28 B] Get:27 http://ftpmaster.internal wily-updates/restricted armhf Packages [28 B] Get:28 http://ftpmaster.internal wily-updates/universe armhf Packages [28 B] Get:29 http://ftpmaster.internal wily-updates/multiverse armhf Packages [28 B] Get:30 http://ftpmaster.internal wily-updates/main Translation-en [28 B] Get:31 http://ftpmaster.internal wily-updates/multiverse Translation-en [28 B] Get:32 http://ftpmaster.internal wily-updates/restricted Translation-en [28 B] Get:33 http://ftpmaster.internal wily-updates/universe Translation-en [28 B] Fetched 14.1 MB in 19s (717 kB/s) Reading package lists... W: GPG error: http://ppa.launchpad.net wily InRelease: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 1E9377A2BA9EF27F Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.12 libtimedate-perl Use 'apt-get autoremove' to remove them. The following NEW packages will be installed: libapt-pkg4.16 The following packages will be upgraded: apt apt-transport-https bash binutils build-essential cpp-5 debconf dpkg dpkg-dev g++-5 gcc-5 gcc-5-base libapparmor1 libasan2 libasn1-8-heimdal libatomic1 libaudit-common libaudit1 libcc1-0 libcryptsetup4 libcurl3-gnutls libdb5.3 libdbus-1-3 libdpkg-perl libgcc-5-dev libgcc1 libgnutls-deb0-28 libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libkmod2 libkrb5-26-heimdal libldap-2.4-2 libpcre3 libroken18-heimdal libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libstdc++-5-dev libstdc++6 libsystemd0 libubsan0 libudev1 libwind0-heimdal linux-libc-dev make pkgbinarymangler systemd systemd-sysv udev zlib1g 57 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 95.6 MB of archives. After this operation, 4380 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! pkgbinarymangler Authentication warning overridden. Get:1 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu/ wily/main pkgbinarymangler all 122.2 [28.6 kB] Get:2 http://ftpmaster.internal/ubuntu/ wily/main bash armhf 4.3-14ubuntu1 [505 kB] Get:3 http://ftpmaster.internal/ubuntu/ wily/main dpkg armhf 1.18.2ubuntu4 [1989 kB] Get:4 http://ftpmaster.internal/ubuntu/ wily/main libgomp1 armhf 5.2.1-21ubuntu2 [50.2 kB] Get:5 http://ftpmaster.internal/ubuntu/ wily/main libatomic1 armhf 5.2.1-21ubuntu2 [6124 B] Get:6 http://ftpmaster.internal/ubuntu/ wily/main libasan2 armhf 5.2.1-21ubuntu2 [244 kB] Get:7 http://ftpmaster.internal/ubuntu/ wily/main gcc-5-base armhf 5.2.1-21ubuntu2 [16.7 kB] Get:8 http://ftpmaster.internal/ubuntu/ wily/main libgcc1 armhf 1:5.2.1-21ubuntu2 [38.9 kB] Get:9 http://ftpmaster.internal/ubuntu/ wily/main libubsan0 armhf 5.2.1-21ubuntu2 [88.8 kB] Get:10 http://ftpmaster.internal/ubuntu/ wily/main cpp-5 armhf 5.2.1-21ubuntu2 [23.9 MB] Get:11 http://ftpmaster.internal/ubuntu/ wily/main libcc1-0 armhf 5.2.1-21ubuntu2 [26.1 kB] Get:12 http://ftpmaster.internal/ubuntu/ wily/main g++-5 armhf 5.2.1-21ubuntu2 [29.8 MB] Get:13 http://ftpmaster.internal/ubuntu/ wily/main gcc-5 armhf 5.2.1-21ubuntu2 [24.1 MB] Get:14 http://ftpmaster.internal/ubuntu/ wily/main libgcc-5-dev armhf 5.2.1-21ubuntu2 [471 kB] Get:15 http://ftpmaster.internal/ubuntu/ wily/main libstdc++-5-dev armhf 5.2.1-21ubuntu2 [1411 kB] Get:16 http://ftpmaster.internal/ubuntu/ wily/main libstdc++6 armhf 5.2.1-21ubuntu2 [351 kB] Get:17 http://ftpmaster.internal/ubuntu/ wily/main zlib1g armhf 1:1.2.8.dfsg-2ubuntu4 [45.3 kB] Get:18 http://ftpmaster.internal/ubuntu/ wily/main binutils armhf 2.25.1-5ubuntu1 [2304 kB] Get:19 http://ftpmaster.internal/ubuntu/ wily/main libapt-pkg4.16 armhf 1.0.10.2ubuntu1 [585 kB] Get:20 http://ftpmaster.internal/ubuntu/ wily/main apt armhf 1.0.10.2ubuntu1 [955 kB] Get:21 http://ftpmaster.internal/ubuntu/ wily/main debconf all 1.5.57ubuntu1 [136 kB] Get:22 http://ftpmaster.internal/ubuntu/ wily/main libpcre3 armhf 2:8.35-7.1ubuntu1 [203 kB] Get:23 http://ftpmaster.internal/ubuntu/ wily/main libsystemd0 armhf 225-1ubuntu7 [178 kB] Get:24 http://ftpmaster.internal/ubuntu/ wily/main systemd armhf 225-1ubuntu7 [2967 kB] Get:25 http://ftpmaster.internal/ubuntu/ wily/main libudev1 armhf 225-1ubuntu7 [49.4 kB] Get:26 http://ftpmaster.internal/ubuntu/ wily/main udev armhf 225-1ubuntu7 [937 kB] Get:27 http://ftpmaster.internal/ubuntu/ wily/main libkmod2 armhf 21-1ubuntu1 [34.4 kB] Get:28 http://ftpmaster.internal/ubuntu/ wily/main libselinux1 armhf 2.3-2build1 [51.3 kB] Get:29 http://ftpmaster.internal/ubuntu/ wily/main libapparmor1 armhf 2.10-0ubuntu6 [26.1 kB] Get:30 http://ftpmaster.internal/ubuntu/ wily/main libaudit-common all 1:2.4.2-1ubuntu1 [4080 B] Get:31 http://ftpmaster.internal/ubuntu/ wily/main libaudit1 armhf 1:2.4.2-1ubuntu1 [32.4 kB] Get:32 http://ftpmaster.internal/ubuntu/ wily/main libcryptsetup4 armhf 2:1.6.6-5ubuntu2 [65.6 kB] Get:33 http://ftpmaster.internal/ubuntu/ wily/main libseccomp2 armhf 2.2.3-2ubuntu1 [28.3 kB] Get:34 http://ftpmaster.internal/ubuntu/ wily/main systemd-sysv armhf 225-1ubuntu7 [14.4 kB] Get:35 http://ftpmaster.internal/ubuntu/ wily/main libgnutls-deb0-28 armhf 3.3.15-5ubuntu2 [460 kB] Get:36 http://ftpmaster.internal/ubuntu/ wily/main libroken18-heimdal armhf 1.6~rc2+dfsg-10ubuntu1 [33.6 kB] Get:37 http://ftpmaster.internal/ubuntu/ wily/main libasn1-8-heimdal armhf 1.6~rc2+dfsg-10ubuntu1 [138 kB] Get:38 http://ftpmaster.internal/ubuntu/ wily/main libhcrypto4-heimdal armhf 1.6~rc2+dfsg-10ubuntu1 [75.9 kB] Get:39 http://ftpmaster.internal/ubuntu/ wily/main libheimbase1-heimdal armhf 1.6~rc2+dfsg-10ubuntu1 [24.2 kB] Get:40 http://ftpmaster.internal/ubuntu/ wily/main libwind0-heimdal armhf 1.6~rc2+dfsg-10ubuntu1 [47.2 kB] Get:41 http://ftpmaster.internal/ubuntu/ wily/main libhx509-5-heimdal armhf 1.6~rc2+dfsg-10ubuntu1 [88.7 kB] Get:42 http://ftpmaster.internal/ubuntu/ wily/main libkrb5-26-heimdal armhf 1.6~rc2+dfsg-10ubuntu1 [164 kB] Get:43 http://ftpmaster.internal/ubuntu/ wily/main libheimntlm0-heimdal armhf 1.6~rc2+dfsg-10ubuntu1 [13.3 kB] Get:44 http://ftpmaster.internal/ubuntu/ wily/main libgssapi3-heimdal armhf 1.6~rc2+dfsg-10ubuntu1 [76.4 kB] Get:45 http://ftpmaster.internal/ubuntu/ wily/main libdb5.3 armhf 5.3.28-11 [591 kB] Get:46 http://ftpmaster.internal/ubuntu/ wily/main libsasl2-modules-db armhf 2.1.26.dfsg1-14 [12.9 kB] Get:47 http://ftpmaster.internal/ubuntu/ wily/main libsasl2-2 armhf 2.1.26.dfsg1-14 [42.2 kB] Get:48 http://ftpmaster.internal/ubuntu/ wily/main libldap-2.4-2 armhf 2.4.41+dfsg-1ubuntu2 [138 kB] Get:49 http://ftpmaster.internal/ubuntu/ wily/main libsemanage-common all 2.3-1build2 [6238 B] Get:50 http://ftpmaster.internal/ubuntu/ wily/main libsemanage1 armhf 2.3-1build2 [60.7 kB] Get:51 http://ftpmaster.internal/ubuntu/ wily/main libcurl3-gnutls armhf 7.43.0-1ubuntu2 [158 kB] Get:52 http://ftpmaster.internal/ubuntu/ wily/main apt-transport-https armhf 1.0.10.2ubuntu1 [22.2 kB] Get:53 http://ftpmaster.internal/ubuntu/ wily/main libdbus-1-3 armhf 1.10.0-1ubuntu1 [139 kB] Get:54 http://ftpmaster.internal/ubuntu/ wily/main make armhf 4.0-8.2 [135 kB] Get:55 http://ftpmaster.internal/ubuntu/ wily/main dpkg-dev all 1.18.2ubuntu4 [583 kB] Get:56 http://ftpmaster.internal/ubuntu/ wily/main libdpkg-perl all 1.18.2ubuntu4 [194 kB] Get:57 http://ftpmaster.internal/ubuntu/ wily/main build-essential armhf 12.1ubuntu2 [4716 B] Get:58 http://ftpmaster.internal/ubuntu/ wily/main linux-libc-dev armhf 4.2.0-14.16 [790 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 95.6 MB in 13s (6878 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11488 files and directories currently installed.) Preparing to unpack .../bash_4.3-14ubuntu1_armhf.deb ... Unpacking bash (4.3-14ubuntu1) over (4.3-11ubuntu3) ... Setting up bash (4.3-14ubuntu1) ... Installing new version of config file /etc/skel/.bashrc ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 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Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11485 files and directories currently installed.) Preparing to unpack .../libubsan0_5.2.1-21ubuntu2_armhf.deb ... Unpacking libubsan0:armhf (5.2.1-21ubuntu2) over (5.2.1-15ubuntu1) ... Preparing to unpack .../cpp-5_5.2.1-21ubuntu2_armhf.deb ... Unpacking cpp-5 (5.2.1-21ubuntu2) over (5.2.1-15ubuntu1) ... Preparing to unpack .../libcc1-0_5.2.1-21ubuntu2_armhf.deb ... 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11550 files and directories currently installed.) Preparing to unpack .../libudev1_225-1ubuntu7_armhf.deb ... Unpacking libudev1:armhf (225-1ubuntu7) over (224-1ubuntu2) ... Setting up libudev1:armhf (225-1ubuntu7) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... 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Setting up libgomp1:armhf (5.2.1-21ubuntu2) ... Setting up libatomic1:armhf (5.2.1-21ubuntu2) ... Setting up libasan2:armhf (5.2.1-21ubuntu2) ... Setting up libubsan0:armhf (5.2.1-21ubuntu2) ... Setting up cpp-5 (5.2.1-21ubuntu2) ... Setting up libcc1-0:armhf (5.2.1-21ubuntu2) ... Setting up binutils (2.25.1-5ubuntu1) ... Setting up libgcc-5-dev:armhf (5.2.1-21ubuntu2) ... Setting up gcc-5 (5.2.1-21ubuntu2) ... Setting up libstdc++-5-dev:armhf (5.2.1-21ubuntu2) ... Setting up g++-5 (5.2.1-21ubuntu2) ... Setting up apt (1.0.10.2ubuntu1) ... Setting up libgnutls-deb0-28:armhf (3.3.15-5ubuntu2) ... Setting up libroken18-heimdal:armhf (1.6~rc2+dfsg-10ubuntu1) ... Setting up libasn1-8-heimdal:armhf (1.6~rc2+dfsg-10ubuntu1) ... Setting up libhcrypto4-heimdal:armhf (1.6~rc2+dfsg-10ubuntu1) ... Setting up libheimbase1-heimdal:armhf (1.6~rc2+dfsg-10ubuntu1) ... Setting up libwind0-heimdal:armhf (1.6~rc2+dfsg-10ubuntu1) ... Setting up libhx509-5-heimdal:armhf (1.6~rc2+dfsg-10ubuntu1) ... Setting up libkrb5-26-heimdal:armhf (1.6~rc2+dfsg-10ubuntu1) ... Setting up libheimntlm0-heimdal:armhf (1.6~rc2+dfsg-10ubuntu1) ... Setting up libgssapi3-heimdal:armhf (1.6~rc2+dfsg-10ubuntu1) ... Setting up libsasl2-modules-db:armhf (2.1.26.dfsg1-14) ... Setting up libsasl2-2:armhf (2.1.26.dfsg1-14) ... Setting up libldap-2.4-2:armhf (2.4.41+dfsg-1ubuntu2) ... Setting up libcurl3-gnutls:armhf (7.43.0-1ubuntu2) ... Setting up apt-transport-https (1.0.10.2ubuntu1) ... Setting up libdbus-1-3:armhf (1.10.0-1ubuntu1) ... Setting up make (4.0-8.2) ... Setting up libdpkg-perl (1.18.2ubuntu4) ... Setting up dpkg-dev (1.18.2ubuntu4) ... Setting up build-essential (12.1ubuntu2) ... Setting up linux-libc-dev:armhf (4.2.0-14.16) ... Setting up pkgbinarymangler (122.2) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-8056759', 'armhf', 'wily', '-c', 'chroot:autobuild', '--arch=armhf', '--dist=wily', '--purge=never', '--nolog', 'python-biopython_1.65+dfsg-1.dsc'] Initiating build PACKAGEBUILD-8056759 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.2.0-84-highbank #121-Ubuntu SMP PREEMPT Tue May 5 19:44:15 UTC 2015 armv7l sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on kishi12.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ python-biopython 1.65+dfsg-1 (armhf) 06 Oct 2015 09:07 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: python-biopython Version: 1.65+dfsg-1 Source Version: 1.65+dfsg-1 Distribution: wily Machine Architecture: armhf Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/python-biopython-cZx032/python-biopython-1.65+dfsg' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/python-biopython-cZx032' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-8056759/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── python-biopython_1.65+dfsg-1.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-gG5IBA/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.12 libtimedate-perl Use 'apt-get autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/770 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed Authentication warning overridden. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11550 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dpkg-dev (>= 1.16.1~), python-all-dev, python3-all-dev, python-numpy, python3-numpy, flex, python-reportlab, python3-reportlab, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, ncbi-blast+, phyml, prank, probcons, python-mysqldb, python-matplotlib, python3-matplotlib, python-pil, python3-pil, python-rdflib (>= 4), python3-rdflib (>= 4), python-renderpm, python3-renderpm, python-psycopg2, python3-psycopg2, t-coffee, wise (>= 2.4.1-16) Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dpkg-dev (>= 1.16.1~), python-all-dev, python3-all-dev, python-numpy, python3-numpy, flex, python-reportlab, python3-reportlab, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, ncbi-blast+, phyml, prank, probcons, python-mysqldb, python-matplotlib, python3-matplotlib, python-pil, python3-pil, python-rdflib (>= 4), python3-rdflib (>= 4), python-renderpm, python3-renderpm, python-psycopg2, python3-psycopg2, t-coffee, wise (>= 2.4.1-16) dpkg-deb: building package 'sbuild-build-depends-python-biopython-dummy' in '/«BUILDDIR»/resolver-NTZMgR/apt_archive/sbuild-build-depends-python-biopython-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install python-biopython build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.12 libtimedate-perl Use 'apt-get autoremove' to remove them. The following extra packages will be installed: bsdmainutils clustalo clustalw debhelper dh-python dialign dssp emboss emboss-data emboss-lib fasttree file flex fontconfig fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base groff-base gsfonts intltool-debian libargtable2-0 libart-2.0-2 libasprintf0v5 libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libblas-common libblas3 libboost-iostreams1.58.0 libboost-program-options1.58.0 libboost-system1.58.0 libboost-thread1.58.0 libcairo2 libcroco3 libcups2 libdatrie1 libexpat1 libexpat1-dev libfl-dev libfontconfig1 libfreetype6 libgd3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libglib2.0-0 libgraphite2-3 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhpdf-2.2.1 libicu55 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblcms2-2 libmagic1 libmpdec2 libmysqlclient18 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpipeline1 libpixman-1-0 libpq5 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.4 libpython3.4-dev libpython3.4-minimal libpython3.4-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libsigsegv2 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libunistring0 libvpx2 libwebp5 libwebpmux1 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml2 libxpm4 libxrandr2 libxrender1 libxss1 m4 mafft man-db mime-support muscle mysql-common ncbi-blast+ ncbi-data phyml po-debconf prank probcons python python-all python-all-dev python-dateutil python-dev python-funcsigs python-isodate python-matplotlib python-matplotlib-data python-minimal python-mock python-mysqldb python-nose python-numpy python-pbr python-pil python-pkg-resources python-psycopg2 python-pyparsing python-rdflib python-renderpm python-reportlab python-reportlab-accel python-six python-tz python2.7 python2.7-dev python2.7-minimal python3 python3-all python3-all-dev python3-dateutil python3-dev python3-isodate python3-matplotlib python3-minimal python3-nose python3-numpy python3-pil python3-pkg-resources python3-psycopg2 python3-pyparsing python3-rdflib python3-renderpm python3-reportlab python3-reportlab-accel python3-six python3-tz python3.4 python3.4-dev python3.4-minimal python3.5 python3.5-dev python3.5-minimal shared-mime-info t-coffee ucf wise wise-data x11-common Suggested packages: wamerican wordlist whois vacation clustalx seaview dh-make emboss-doc emboss-test embassy bison gettext-doc groff cups-common libgd-tools librsvg2-common gvfs javascript-common libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 less www-browser libmail-box-perl probcons-extra python-doc python-tk python-funcsigs-doc dvipng gir1.2-gtk-3.0 ghostscript inkscape ipython python-cairocffi python-configobj python-excelerator python-gobject python-gtk2 python-matplotlib-doc python-qt4 python-scipy python-sip python-tornado python-traits python-wxgtk3.0 texlive-extra-utils texlive-latex-extra ttf-staypuft python-mock-doc mysql-server-5.1 mysql-server python-egenix-mxdatetime python-mysqldb-dbg python-coverage python-nose-doc gfortran python-numpy-dbg python-numpy-doc python-pil-doc python-pil-dbg python-setuptools python-psycopg2-doc python-rdflib-doc python-rdflib-tools python-renderpm-dbg pdf-viewer python-egenix-mxtexttools python-reportlab-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv ipython3 python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt4 python3-scipy python3-sip python3-tornado python3-numpy-dbg python3-pil-dbg python3-setuptools python3-renderpm-dbg python3-egenix-mxtexttools python3.4-venv python3.4-doc python3.5-venv python3.5-doc boxshade t-coffee-examples fsa wise-doc Recommended packages: primer3 curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data xdg-user-dirs hicolor-icon-theme libgtk2.0-bin xml-core blast2 libwww-perl lynx ruby libmail-sendmail-perl python-glade2 python-imaging python-sparqlwrapper python-html5lib python3-sparqlwrapper python3-html5lib amap-align dialign-tx kalign libsoap-lite-perl libxml-simple-perl mustang poa proda tm-align The following NEW packages will be installed: bsdmainutils clustalo clustalw debhelper dh-python dialign dssp emboss emboss-data emboss-lib fasttree file flex fontconfig fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base groff-base gsfonts intltool-debian libargtable2-0 libart-2.0-2 libasprintf0v5 libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libblas-common libblas3 libboost-iostreams1.58.0 libboost-program-options1.58.0 libboost-system1.58.0 libboost-thread1.58.0 libcairo2 libcroco3 libcups2 libdatrie1 libexpat1 libexpat1-dev libfl-dev libfontconfig1 libfreetype6 libgd3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libglib2.0-0 libgraphite2-3 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhpdf-2.2.1 libicu55 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblcms2-2 libmagic1 libmpdec2 libmysqlclient18 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpipeline1 libpixman-1-0 libpq5 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.4 libpython3.4-dev libpython3.4-minimal libpython3.4-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libsigsegv2 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libunistring0 libvpx2 libwebp5 libwebpmux1 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml2 libxpm4 libxrandr2 libxrender1 libxss1 m4 mafft man-db mime-support muscle mysql-common ncbi-blast+ ncbi-data phyml po-debconf prank probcons python python-all python-all-dev python-dateutil python-dev python-funcsigs python-isodate python-matplotlib python-matplotlib-data python-minimal python-mock python-mysqldb python-nose python-numpy python-pbr python-pil python-pkg-resources python-psycopg2 python-pyparsing python-rdflib python-renderpm python-reportlab python-reportlab-accel python-six python-tz python2.7 python2.7-dev python2.7-minimal python3 python3-all python3-all-dev python3-dateutil python3-dev python3-isodate python3-matplotlib python3-minimal python3-nose python3-numpy python3-pil python3-pkg-resources python3-psycopg2 python3-pyparsing python3-rdflib python3-renderpm python3-reportlab python3-reportlab-accel python3-six python3-tz python3.4 python3.4-dev python3.4-minimal python3.5 python3.5-dev python3.5-minimal sbuild-build-depends-python-biopython-dummy shared-mime-info t-coffee ucf wise wise-data x11-common 0 upgraded, 193 newly installed, 0 to remove and 0 not upgraded. Need to get 239 MB/239 MB of archives. After this operation, 911 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-python-biopython-dummy Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ wily/main libmpdec2 armhf 2.4.1-1 [67.7 kB] Get:2 http://ftpmaster.internal/ubuntu/ wily/main libpython3.4-minimal armhf 3.4.3-9 [460 kB] Get:3 http://ftpmaster.internal/ubuntu/ wily/main libexpat1 armhf 2.1.0-7 [52.4 kB] Get:4 http://ftpmaster.internal/ubuntu/ wily/main python3.4-minimal armhf 3.4.3-9 [1238 kB] Get:5 http://ftpmaster.internal/ubuntu/ wily/main python3-minimal armhf 3.4.3-4ubuntu1 [23.4 kB] Get:6 http://ftpmaster.internal/ubuntu/ wily/main mime-support all 3.58ubuntu1 [31.6 kB] Get:7 http://ftpmaster.internal/ubuntu/ wily/main libpython3.4-stdlib armhf 3.4.3-9 [2046 kB] Get:8 http://ftpmaster.internal/ubuntu/ wily/main python3.4 armhf 3.4.3-9 [186 kB] Get:9 http://ftpmaster.internal/ubuntu/ wily/main libpython3-stdlib armhf 3.4.3-4ubuntu1 [7018 B] Get:10 http://ftpmaster.internal/ubuntu/ wily/main dh-python all 2.20150826ubuntu1 [69.3 kB] Get:11 http://ftpmaster.internal/ubuntu/ wily/main python3 armhf 3.4.3-4ubuntu1 [8836 B] Get:12 http://ftpmaster.internal/ubuntu/ wily/main libasprintf0v5 armhf 0.19.4-1ubuntu3 [6422 B] Get:13 http://ftpmaster.internal/ubuntu/ wily/main libxau6 armhf 1:1.0.8-1 [7324 B] Get:14 http://ftpmaster.internal/ubuntu/ wily/main libxdmcp6 armhf 1:1.1.2-1 [9804 B] Get:15 http://ftpmaster.internal/ubuntu/ wily/main libxcb1 armhf 1.11-0ubuntu1 [36.6 kB] Get:16 http://ftpmaster.internal/ubuntu/ wily/main libx11-data all 2:1.6.3-1ubuntu2 [113 kB] Get:17 http://ftpmaster.internal/ubuntu/ wily/main libx11-6 armhf 2:1.6.3-1ubuntu2 [514 kB] Get:18 http://ftpmaster.internal/ubuntu/ wily/main libxext6 armhf 2:1.3.3-1 [25.1 kB] Get:19 http://ftpmaster.internal/ubuntu/ wily/main groff-base armhf 1.22.3-1 [1051 kB] Get:20 http://ftpmaster.internal/ubuntu/ wily/main bsdmainutils armhf 9.0.6ubuntu1 [169 kB] Get:21 http://ftpmaster.internal/ubuntu/ wily/main libpipeline1 armhf 1.4.1-1 [21.0 kB] Get:22 http://ftpmaster.internal/ubuntu/ wily/main man-db armhf 2.7.3-1 [837 kB] Get:23 http://ftpmaster.internal/ubuntu/ wily/main libsigsegv2 armhf 2.10-4 [13.3 kB] Get:24 http://ftpmaster.internal/ubuntu/ wily/main m4 armhf 1.4.17-4 [178 kB] Get:25 http://ftpmaster.internal/ubuntu/ wily/main libfl-dev armhf 2.5.39-8 [13.0 kB] Get:26 http://ftpmaster.internal/ubuntu/ wily/main flex armhf 2.5.39-8 [274 kB] Get:27 http://ftpmaster.internal/ubuntu/ wily/main fonts-dejavu-core all 2.35-1 [1039 kB] Get:28 http://ftpmaster.internal/ubuntu/ wily/main ucf all 3.0030 [55.5 kB] Get:29 http://ftpmaster.internal/ubuntu/ wily/main fontconfig-config all 2.11.1-0ubuntu6 [48.7 kB] Get:30 http://ftpmaster.internal/ubuntu/ wily/main libfreetype6 armhf 2.5.2-4ubuntu2 [265 kB] Get:31 http://ftpmaster.internal/ubuntu/ wily/main libfontconfig1 armhf 2.11.1-0ubuntu6 [110 kB] Get:32 http://ftpmaster.internal/ubuntu/ wily/main fontconfig armhf 2.11.1-0ubuntu6 [175 kB] Get:33 http://ftpmaster.internal/ubuntu/ wily/main libart-2.0-2 armhf 2.3.21-2 [45.8 kB] Get:34 http://ftpmaster.internal/ubuntu/ wily/main libglib2.0-0 armhf 2.46.0-2 [968 kB] Get:35 http://ftpmaster.internal/ubuntu/ wily/main libatk1.0-data all 2.16.0-2 [16.9 kB] Get:36 http://ftpmaster.internal/ubuntu/ wily/main libatk1.0-0 armhf 2.16.0-2 [50.4 kB] Get:37 http://ftpmaster.internal/ubuntu/ wily/main libavahi-common-data armhf 0.6.31-4ubuntu4 [21.0 kB] Get:38 http://ftpmaster.internal/ubuntu/ wily/main libavahi-common3 armhf 0.6.31-4ubuntu4 [19.2 kB] Get:39 http://ftpmaster.internal/ubuntu/ wily/main libavahi-client3 armhf 0.6.31-4ubuntu4 [22.4 kB] Get:40 http://ftpmaster.internal/ubuntu/ wily/main libicu55 armhf 55.1-4ubuntu1 [7419 kB] Get:41 http://ftpmaster.internal/ubuntu/ wily/main libxml2 armhf 2.9.2+zdfsg1-4 [600 kB] Get:42 http://ftpmaster.internal/ubuntu/ wily/main libcroco3 armhf 0.6.8-3 [72.0 kB] Get:43 http://ftpmaster.internal/ubuntu/ wily/main libgraphite2-3 armhf 1.2.4-3ubuntu1 [44.1 kB] Get:44 http://ftpmaster.internal/ubuntu/ wily/main libjpeg-turbo8 armhf 1.3.0-0ubuntu2 [85.2 kB] Get:45 http://ftpmaster.internal/ubuntu/ wily/main liblcms2-2 armhf 2.6-3ubuntu2 [114 kB] Get:46 http://ftpmaster.internal/ubuntu/ wily/main mysql-common all 5.6.25-0ubuntu1 [14.7 kB] Get:47 http://ftpmaster.internal/ubuntu/ wily/main libmysqlclient18 armhf 5.6.25-0ubuntu1 [630 kB] Get:48 http://ftpmaster.internal/ubuntu/ wily/main libthai-data all 0.1.22-2 [131 kB] Get:49 http://ftpmaster.internal/ubuntu/ wily/main libdatrie1 armhf 0.2.9-2 [14.0 kB] Get:50 http://ftpmaster.internal/ubuntu/ wily/main libthai0 armhf 0.1.22-2 [14.2 kB] Get:51 http://ftpmaster.internal/ubuntu/ wily/main libpango-1.0-0 armhf 1.36.8-3 [136 kB] Get:52 http://ftpmaster.internal/ubuntu/ wily/main libpixman-1-0 armhf 0.32.6-3 [164 kB] Get:53 http://ftpmaster.internal/ubuntu/ wily/main libxcb-render0 armhf 1.11-0ubuntu1 [11.2 kB] Get:54 http://ftpmaster.internal/ubuntu/ wily/main libxcb-shm0 armhf 1.11-0ubuntu1 [5620 B] Get:55 http://ftpmaster.internal/ubuntu/ wily/main libxrender1 armhf 1:0.9.9-0ubuntu1 [15.7 kB] Get:56 http://ftpmaster.internal/ubuntu/ wily/main libcairo2 armhf 1.14.2-2ubuntu2 [488 kB] Get:57 http://ftpmaster.internal/ubuntu/ wily/main libharfbuzz0b armhf 1.0.1-1build1 [122 kB] Get:58 http://ftpmaster.internal/ubuntu/ wily/main libpangoft2-1.0-0 armhf 1.36.8-3 [28.1 kB] Get:59 http://ftpmaster.internal/ubuntu/ wily/main libpangocairo-1.0-0 armhf 1.36.8-3 [17.6 kB] Get:60 http://ftpmaster.internal/ubuntu/ wily/main libtcl8.6 armhf 8.6.4+dfsg-2ubuntu1 [773 kB] Get:61 http://ftpmaster.internal/ubuntu/ wily/main libjbig0 armhf 2.1-3.1 [24.3 kB] Get:62 http://ftpmaster.internal/ubuntu/ wily/main libjpeg8 armhf 8c-2ubuntu8 [2202 B] Get:63 http://ftpmaster.internal/ubuntu/ wily/main libtiff5 armhf 4.0.3-12.3ubuntu2 [129 kB] Get:64 http://ftpmaster.internal/ubuntu/ wily/main libxft2 armhf 2.3.2-1 [30.5 kB] Get:65 http://ftpmaster.internal/ubuntu/ wily/main x11-common all 1:7.7+7ubuntu4 [58.6 kB] Get:66 http://ftpmaster.internal/ubuntu/ wily/main libxss1 armhf 1:1.2.2-1 [7652 B] Get:67 http://ftpmaster.internal/ubuntu/ wily/main libtk8.6 armhf 8.6.4+dfsg-2ubuntu1 [616 kB] Get:68 http://ftpmaster.internal/ubuntu/ wily/main libunistring0 armhf 0.9.3-5.2ubuntu1 [250 kB] Get:69 http://ftpmaster.internal/ubuntu/ wily/main libxcomposite1 armhf 1:0.4.4-1 [7080 B] Get:70 http://ftpmaster.internal/ubuntu/ wily/main libxfixes3 armhf 1:5.0.1-2 [9820 B] Get:71 http://ftpmaster.internal/ubuntu/ wily/main libxcursor1 armhf 1:1.1.14-1 [18.8 kB] Get:72 http://ftpmaster.internal/ubuntu/ wily/main libxdamage1 armhf 1:1.1.4-2 [6490 B] Get:73 http://ftpmaster.internal/ubuntu/ wily/main libxi6 armhf 2:1.7.4-1 [23.8 kB] Get:74 http://ftpmaster.internal/ubuntu/ wily/main libxinerama1 armhf 2:1.1.3-1 [7278 B] Get:75 http://ftpmaster.internal/ubuntu/ wily/main libxpm4 armhf 1:3.5.11-1 [28.6 kB] Get:76 http://ftpmaster.internal/ubuntu/ wily/main libpython2.7-minimal armhf 2.7.10-4 [337 kB] Get:77 http://ftpmaster.internal/ubuntu/ wily/main python2.7-minimal armhf 2.7.10-4 [1045 kB] Get:78 http://ftpmaster.internal/ubuntu/ wily/main python-minimal armhf 2.7.9-1 [28.4 kB] Get:79 http://ftpmaster.internal/ubuntu/ wily/main libpython2.7-stdlib armhf 2.7.10-4 [1751 kB] Get:80 http://ftpmaster.internal/ubuntu/ wily/main python2.7 armhf 2.7.10-4 [211 kB] Get:81 http://ftpmaster.internal/ubuntu/ wily/main libpython-stdlib armhf 2.7.9-1 [7762 B] Get:82 http://ftpmaster.internal/ubuntu/ wily/main python armhf 2.7.9-1 [137 kB] Get:83 http://ftpmaster.internal/ubuntu/ wily/main libpython3.5-minimal armhf 3.5.0-2 [515 kB] Get:84 http://ftpmaster.internal/ubuntu/ wily/main python3.5-minimal armhf 3.5.0-2 [1302 kB] Get:85 http://ftpmaster.internal/ubuntu/ wily/main libwebp5 armhf 0.4.3-1.3 [131 kB] Get:86 http://ftpmaster.internal/ubuntu/ wily/main libwebpmux1 armhf 0.4.3-1.3 [12.4 kB] Get:87 http://ftpmaster.internal/ubuntu/ wily/main libmagic1 armhf 1:5.22+15-2ubuntu1 [206 kB] Get:88 http://ftpmaster.internal/ubuntu/ wily/main file armhf 1:5.22+15-2ubuntu1 [20.3 kB] Get:89 http://ftpmaster.internal/ubuntu/ wily/main gettext-base armhf 0.19.4-1ubuntu3 [45.1 kB] Get:90 http://ftpmaster.internal/ubuntu/ wily/main shared-mime-info armhf 1.3-1 [386 kB] Get:91 http://ftpmaster.internal/ubuntu/ wily/universe libargtable2-0 armhf 12-1.1 [12.0 kB] Get:92 http://ftpmaster.internal/ubuntu/ wily/universe clustalo armhf 1.2.1-1 [225 kB] Get:93 http://ftpmaster.internal/ubuntu/ wily/universe clustalw armhf 2.1+lgpl-4 [235 kB] Get:94 http://ftpmaster.internal/ubuntu/ wily/main gettext armhf 0.19.4-1ubuntu3 [797 kB] Get:95 http://ftpmaster.internal/ubuntu/ wily/main intltool-debian all 0.35.0+20060710.2 [24.5 kB] Get:96 http://ftpmaster.internal/ubuntu/ wily/main po-debconf all 1.0.18 [234 kB] Get:97 http://ftpmaster.internal/ubuntu/ wily/main debhelper all 9.20150811ubuntu2 [732 kB] Get:98 http://ftpmaster.internal/ubuntu/ wily/universe dialign armhf 2.2.1-7 [129 kB] Get:99 http://ftpmaster.internal/ubuntu/ wily/main libboost-iostreams1.58.0 armhf 1.58.0+dfsg-0ubuntu5 [26.8 kB] Get:100 http://ftpmaster.internal/ubuntu/ wily/main libboost-program-options1.58.0 armhf 1.58.0+dfsg-0ubuntu5 [117 kB] Get:101 http://ftpmaster.internal/ubuntu/ wily/main libboost-system1.58.0 armhf 1.58.0+dfsg-0ubuntu5 [9190 B] Get:102 http://ftpmaster.internal/ubuntu/ wily/main libboost-thread1.58.0 armhf 1.58.0+dfsg-0ubuntu5 [40.2 kB] Get:103 http://ftpmaster.internal/ubuntu/ wily/universe dssp armhf 2.2.1-2ubuntu1 [139 kB] Get:104 http://ftpmaster.internal/ubuntu/ wily/main libvpx2 armhf 1.4.0-4 [925 kB] Get:105 http://ftpmaster.internal/ubuntu/ wily/main libgd3 armhf 2.1.1-4build1 [106 kB] Get:106 http://ftpmaster.internal/ubuntu/ wily/universe libhpdf-2.2.1 armhf 2.2.1-1.1 [318 kB] Get:107 http://ftpmaster.internal/ubuntu/ wily/main libpq5 armhf 9.4.4-1 [63.6 kB] Get:108 http://ftpmaster.internal/ubuntu/ wily/universe emboss-lib armhf 6.6.0+dfsg-1 [2624 kB] Get:109 http://ftpmaster.internal/ubuntu/ wily/universe emboss-data all 6.6.0+dfsg-1 [60.7 MB] Get:110 http://ftpmaster.internal/ubuntu/ wily/universe emboss armhf 6.6.0+dfsg-1 [930 kB] Get:111 http://ftpmaster.internal/ubuntu/ wily/universe fonts-lyx all 2.1.4-2 [161 kB] Get:112 http://ftpmaster.internal/ubuntu/ wily/main gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.2ubuntu1 [3374 kB] Get:113 http://ftpmaster.internal/ubuntu/ wily/main libblas-common armhf 1.2.20110419-10 [3078 B] Get:114 http://ftpmaster.internal/ubuntu/ wily/main libblas3 armhf 1.2.20110419-10 [120 kB] Get:115 http://ftpmaster.internal/ubuntu/ wily/main libcups2 armhf 2.1.0-4ubuntu2 [169 kB] Get:116 http://ftpmaster.internal/ubuntu/ wily/main libexpat1-dev armhf 2.1.0-7 [104 kB] Get:117 http://ftpmaster.internal/ubuntu/ wily/main libgdk-pixbuf2.0-common all 2.32.0-1ubuntu1 [10.1 kB] Get:118 http://ftpmaster.internal/ubuntu/ wily/main libgdk-pixbuf2.0-0 armhf 2.32.0-1ubuntu1 [147 kB] Get:119 http://ftpmaster.internal/ubuntu/ wily/main libgfortran3 armhf 5.2.1-21ubuntu2 [164 kB] Get:120 http://ftpmaster.internal/ubuntu/ wily/main libgtk2.0-common all 2.24.28-1ubuntu1 [123 kB] Get:121 http://ftpmaster.internal/ubuntu/ wily/main libxrandr2 armhf 2:1.5.0-1 [14.9 kB] Get:122 http://ftpmaster.internal/ubuntu/ wily/main libgtk2.0-0 armhf 2.24.28-1ubuntu1 [1522 kB] Get:123 http://ftpmaster.internal/ubuntu/ wily/main libjs-jquery all 1.7.2+dfsg-3ubuntu2 [69.0 kB] Get:124 http://ftpmaster.internal/ubuntu/ wily/universe libjs-jquery-ui all 1.10.1+dfsg-1 [458 kB] Get:125 http://ftpmaster.internal/ubuntu/ wily/main liblapack3 armhf 3.5.0-4 [1451 kB] Get:126 http://ftpmaster.internal/ubuntu/ wily/main libpython2.7 armhf 2.7.10-4 [935 kB] Get:127 http://ftpmaster.internal/ubuntu/ wily/main libpython2.7-dev armhf 2.7.10-4 [27.2 MB] Get:128 http://ftpmaster.internal/ubuntu/ wily/main libpython-dev armhf 2.7.9-1 [7836 B] Get:129 http://ftpmaster.internal/ubuntu/ wily/main libpython-all-dev armhf 2.7.9-1 [1052 B] Get:130 http://ftpmaster.internal/ubuntu/ wily/main libpython3.4 armhf 3.4.3-9 [1129 kB] Get:131 http://ftpmaster.internal/ubuntu/ wily/main libpython3.4-dev armhf 3.4.3-9 [33.6 MB] Get:132 http://ftpmaster.internal/ubuntu/ wily/main libpython3-dev armhf 3.4.3-4ubuntu1 [7118 B] Get:133 http://ftpmaster.internal/ubuntu/ wily/main libpython3.5-stdlib armhf 3.5.0-2 [2080 kB] Get:134 http://ftpmaster.internal/ubuntu/ wily/main libpython3.5 armhf 3.5.0-2 [1196 kB] Get:135 http://ftpmaster.internal/ubuntu/ wily/main libpython3.5-dev armhf 3.5.0-2 [36.6 MB] Get:136 http://ftpmaster.internal/ubuntu/ wily/main libpython3-all-dev armhf 3.4.3-4ubuntu1 [1070 B] Get:137 http://ftpmaster.internal/ubuntu/ wily/universe mafft armhf 7.245-1 [574 kB] Get:138 http://ftpmaster.internal/ubuntu/ wily/universe muscle armhf 1:3.8.31-1 [141 kB] Get:139 http://ftpmaster.internal/ubuntu/ wily/universe ncbi-data all 6.1.20120620-8 [3288 kB] Get:140 http://ftpmaster.internal/ubuntu/ wily/universe ncbi-blast+ armhf 2.2.30-4build1 [6928 kB] Get:141 http://ftpmaster.internal/ubuntu/ wily/universe phyml armhf 2:20120412-2 [1336 kB] Get:142 http://ftpmaster.internal/ubuntu/ wily/universe prank armhf 0.0.140110-1 [283 kB] Get:143 http://ftpmaster.internal/ubuntu/ wily/universe probcons armhf 1.12-9 [150 kB] Get:144 http://ftpmaster.internal/ubuntu/ wily/main python-all armhf 2.7.9-1 [1032 B] Get:145 http://ftpmaster.internal/ubuntu/ wily/main python2.7-dev armhf 2.7.10-4 [270 kB] Get:146 http://ftpmaster.internal/ubuntu/ wily/main python-dev armhf 2.7.9-1 [1214 B] Get:147 http://ftpmaster.internal/ubuntu/ wily/main python-all-dev armhf 2.7.9-1 [1056 B] Get:148 http://ftpmaster.internal/ubuntu/ wily/main python-six all 1.9.0-5 [10.7 kB] Get:149 http://ftpmaster.internal/ubuntu/ wily/main python-dateutil all 2.2-2 [51.2 kB] Get:150 http://ftpmaster.internal/ubuntu/ wily/main python-funcsigs all 0.4-1 [12.5 kB] Get:151 http://ftpmaster.internal/ubuntu/ wily/main python-isodate all 0.5.1-2build1 [22.5 kB] Get:152 http://ftpmaster.internal/ubuntu/ wily/universe python-matplotlib-data all 1.4.2-3.1ubuntu1 [2526 kB] Get:153 http://ftpmaster.internal/ubuntu/ wily/main python-pyparsing all 2.0.3+dfsg1-1 [35.3 kB] Get:154 http://ftpmaster.internal/ubuntu/ wily/main python-tz all 2014.10~dfsg1-0ubuntu2 [31.5 kB] Get:155 http://ftpmaster.internal/ubuntu/ wily/main python-numpy armhf 1:1.8.2-1ubuntu2 [1523 kB] Get:156 http://ftpmaster.internal/ubuntu/ wily/main python-pbr all 1.8.0-2ubuntu1 [46.6 kB] Get:157 http://ftpmaster.internal/ubuntu/ wily/main python-mock all 1.3.0-2.1ubuntu1 [46.5 kB] Get:158 http://ftpmaster.internal/ubuntu/ wily/main python-pkg-resources all 18.3.1-2 [70.7 kB] Get:159 http://ftpmaster.internal/ubuntu/ wily/main python-nose all 1.3.6-1 [116 kB] Get:160 http://ftpmaster.internal/ubuntu/ wily/universe python-matplotlib armhf 1.4.2-3.1ubuntu1 [3367 kB] Get:161 http://ftpmaster.internal/ubuntu/ wily/main python-mysqldb armhf 1.3.4-2 [42.4 kB] Get:162 http://ftpmaster.internal/ubuntu/ wily/main python-pil armhf 2.9.0-1 [284 kB] Get:163 http://ftpmaster.internal/ubuntu/ wily/main python-psycopg2 armhf 2.6.1-1build1 [120 kB] Get:164 http://ftpmaster.internal/ubuntu/ wily/main python-rdflib armhf 4.1.2-3 [229 kB] Get:165 http://ftpmaster.internal/ubuntu/ wily/main python-renderpm armhf 3.2.0-1build1 [28.2 kB] Get:166 http://ftpmaster.internal/ubuntu/ wily/main python-reportlab-accel armhf 3.2.0-1build1 [20.5 kB] Get:167 http://ftpmaster.internal/ubuntu/ wily/main python-reportlab all 3.2.0-1build1 [457 kB] Get:168 http://ftpmaster.internal/ubuntu/ wily/main python3.5 armhf 3.5.0-2 [148 kB] Get:169 http://ftpmaster.internal/ubuntu/ wily/main python3-all armhf 3.4.3-4ubuntu1 [1044 B] Get:170 http://ftpmaster.internal/ubuntu/ wily/main python3.4-dev armhf 3.4.3-9 [417 kB] Get:171 http://ftpmaster.internal/ubuntu/ wily/main python3-dev armhf 3.4.3-4ubuntu1 [1252 B] Get:172 http://ftpmaster.internal/ubuntu/ wily/main python3.5-dev armhf 3.5.0-2 [418 kB] Get:173 http://ftpmaster.internal/ubuntu/ wily/main python3-all-dev armhf 3.4.3-4ubuntu1 [1074 B] Get:174 http://ftpmaster.internal/ubuntu/ wily/main python3-six all 1.9.0-5 [10.8 kB] Get:175 http://ftpmaster.internal/ubuntu/ wily/main python3-dateutil all 2.2-2 [33.0 kB] Get:176 http://ftpmaster.internal/ubuntu/ wily/main python3-isodate all 0.5.1-2build1 [22.5 kB] Get:177 http://ftpmaster.internal/ubuntu/ wily/main python3-pyparsing all 2.0.3+dfsg1-1 [35.4 kB] Get:178 http://ftpmaster.internal/ubuntu/ wily/main python3-tz all 2014.10~dfsg1-0ubuntu2 [24.6 kB] Get:179 http://ftpmaster.internal/ubuntu/ wily/main python3-numpy armhf 1:1.8.2-1ubuntu2 [1595 kB] Get:180 http://ftpmaster.internal/ubuntu/ wily/main python3-pkg-resources all 18.3.1-2 [41.4 kB] Get:181 http://ftpmaster.internal/ubuntu/ wily/main python3-nose all 1.3.6-1 [116 kB] Get:182 http://ftpmaster.internal/ubuntu/ wily/universe python3-matplotlib armhf 1.4.2-3.1ubuntu1 [3346 kB] Get:183 http://ftpmaster.internal/ubuntu/ wily/main python3-pil armhf 2.9.0-1 [286 kB] Get:184 http://ftpmaster.internal/ubuntu/ wily/main python3-psycopg2 armhf 2.6.1-1build1 [119 kB] Get:185 http://ftpmaster.internal/ubuntu/ wily/universe python3-rdflib armhf 4.1.2-3 [228 kB] Get:186 http://ftpmaster.internal/ubuntu/ wily/main python3-renderpm armhf 3.2.0-1build1 [28.5 kB] Get:187 http://ftpmaster.internal/ubuntu/ wily/main python3-reportlab-accel armhf 3.2.0-1build1 [16.7 kB] Get:188 http://ftpmaster.internal/ubuntu/ wily/main python3-reportlab all 3.2.0-1build1 [453 kB] Get:189 http://ftpmaster.internal/ubuntu/ wily/universe t-coffee armhf 11.00.8cbe486-1 [747 kB] Get:190 http://ftpmaster.internal/ubuntu/ wily/universe wise-data all 2.4.1-17 [107 kB] Get:191 http://ftpmaster.internal/ubuntu/ wily/universe wise armhf 2.4.1-17 [797 kB] Get:192 http://ftpmaster.internal/ubuntu/ wily/universe fasttree armhf 2.1.8-2 [105 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 239 MB in 35s (6720 kB/s) Selecting previously unselected package libmpdec2:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11550 files and directories currently installed.) Preparing to unpack .../libmpdec2_2.4.1-1_armhf.deb ... Unpacking libmpdec2:armhf (2.4.1-1) ... Selecting previously unselected package libpython3.4-minimal:armhf. Preparing to unpack .../libpython3.4-minimal_3.4.3-9_armhf.deb ... Unpacking libpython3.4-minimal:armhf (3.4.3-9) ... Selecting previously unselected package libexpat1:armhf. 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12491 files and directories currently installed.) Preparing to unpack .../python3_3.4.3-4ubuntu1_armhf.deb ... Unpacking python3 (3.4.3-4ubuntu1) ... Selecting previously unselected package libasprintf0v5:armhf. Preparing to unpack .../libasprintf0v5_0.19.4-1ubuntu3_armhf.deb ... Unpacking libasprintf0v5:armhf (0.19.4-1ubuntu3) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../libxau6_1%3a1.0.8-1_armhf.deb ... 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Unpacking libtcl8.6:armhf (8.6.4+dfsg-2ubuntu1) ... Selecting previously unselected package libjbig0:armhf. Preparing to unpack .../libjbig0_2.1-3.1_armhf.deb ... Unpacking libjbig0:armhf (2.1-3.1) ... Selecting previously unselected package libjpeg8:armhf. Preparing to unpack .../libjpeg8_8c-2ubuntu8_armhf.deb ... Unpacking libjpeg8:armhf (8c-2ubuntu8) ... Selecting previously unselected package libtiff5:armhf. Preparing to unpack .../libtiff5_4.0.3-12.3ubuntu2_armhf.deb ... Unpacking libtiff5:armhf (4.0.3-12.3ubuntu2) ... Selecting previously unselected package libxft2:armhf. Preparing to unpack .../libxft2_2.3.2-1_armhf.deb ... Unpacking libxft2:armhf (2.3.2-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../x11-common_1%3a7.7+7ubuntu4_all.deb ... Unpacking x11-common (1:7.7+7ubuntu4) ... Selecting previously unselected package libxss1:armhf. Preparing to unpack .../libxss1_1%3a1.2.2-1_armhf.deb ... Unpacking libxss1:armhf (1:1.2.2-1) ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15040 files and directories currently installed.) Preparing to unpack .../python_2.7.9-1_armhf.deb ... Unpacking python (2.7.9-1) ... Selecting previously unselected package libpython3.5-minimal:armhf. Preparing to unpack .../libpython3.5-minimal_3.5.0-2_armhf.deb ... Unpacking libpython3.5-minimal:armhf (3.5.0-2) ... Selecting previously unselected package python3.5-minimal. Preparing to unpack .../python3.5-minimal_3.5.0-2_armhf.deb ... 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Setting up libx11-6:armhf (2:1.6.3-1ubuntu2) ... Setting up libxext6:armhf (2:1.3.3-1) ... Setting up groff-base (1.22.3-1) ... Setting up bsdmainutils (9.0.6ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:armhf (1.4.1-1) ... Setting up man-db (2.7.3-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libsigsegv2:armhf (2.10-4) ... Setting up m4 (1.4.17-4) ... Setting up libfl-dev:armhf (2.5.39-8) ... Setting up flex (2.5.39-8) ... Setting up fonts-dejavu-core (2.35-1) ... Setting up ucf (3.0030) ... Setting up fontconfig-config (2.11.1-0ubuntu6) ... Setting up libfreetype6:armhf (2.5.2-4ubuntu2) ... Setting up libfontconfig1:armhf (2.11.1-0ubuntu6) ... Setting up fontconfig (2.11.1-0ubuntu6) ... Regenerating fonts cache... done. Setting up libart-2.0-2:armhf (2.3.21-2) ... Setting up libglib2.0-0:armhf (2.46.0-2) ... No schema files found: doing nothing. Setting up libatk1.0-data (2.16.0-2) ... Setting up libatk1.0-0:armhf (2.16.0-2) ... Setting up libavahi-common-data:armhf (0.6.31-4ubuntu4) ... Setting up libavahi-common3:armhf (0.6.31-4ubuntu4) ... Setting up libavahi-client3:armhf (0.6.31-4ubuntu4) ... Setting up libicu55:armhf (55.1-4ubuntu1) ... Setting up libxml2:armhf (2.9.2+zdfsg1-4) ... Setting up libcroco3:armhf (0.6.8-3) ... Setting up libgraphite2-3:armhf (1.2.4-3ubuntu1) ... Setting up libjpeg-turbo8:armhf (1.3.0-0ubuntu2) ... Setting up liblcms2-2:armhf (2.6-3ubuntu2) ... Setting up mysql-common (5.6.25-0ubuntu1) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libmysqlclient18:armhf (5.6.25-0ubuntu1) ... Setting up libthai-data (0.1.22-2) ... Setting up libdatrie1:armhf (0.2.9-2) ... Setting up libthai0:armhf (0.1.22-2) ... Setting up libpango-1.0-0:armhf (1.36.8-3) ... Setting up libpixman-1-0:armhf (0.32.6-3) ... Setting up libxcb-render0:armhf (1.11-0ubuntu1) ... Setting up libxcb-shm0:armhf (1.11-0ubuntu1) ... Setting up libxrender1:armhf (1:0.9.9-0ubuntu1) ... Setting up libcairo2:armhf (1.14.2-2ubuntu2) ... Setting up libharfbuzz0b:armhf (1.0.1-1build1) ... Setting up libpangoft2-1.0-0:armhf (1.36.8-3) ... Setting up libpangocairo-1.0-0:armhf (1.36.8-3) ... Setting up libtcl8.6:armhf (8.6.4+dfsg-2ubuntu1) ... Setting up libjbig0:armhf (2.1-3.1) ... Setting up libjpeg8:armhf (8c-2ubuntu8) ... Setting up libtiff5:armhf (4.0.3-12.3ubuntu2) ... Setting up libxft2:armhf (2.3.2-1) ... Setting up x11-common (1:7.7+7ubuntu4) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of start. Setting up libxss1:armhf (1:1.2.2-1) ... Setting up libtk8.6:armhf (8.6.4+dfsg-2ubuntu1) ... Setting up libunistring0:armhf (0.9.3-5.2ubuntu1) ... Setting up libxcomposite1:armhf (1:0.4.4-1) ... Setting up libxfixes3:armhf (1:5.0.1-2) ... Setting up libxcursor1:armhf (1:1.1.14-1) ... Setting up libxdamage1:armhf (1:1.1.4-2) ... Setting up libxi6:armhf (2:1.7.4-1) ... Setting up libxinerama1:armhf (2:1.1.3-1) ... Setting up libxpm4:armhf (1:3.5.11-1) ... Setting up libpython2.7-stdlib:armhf (2.7.10-4) ... Setting up python2.7 (2.7.10-4) ... Setting up libpython-stdlib:armhf (2.7.9-1) ... Setting up python (2.7.9-1) ... Setting up libpython3.5-minimal:armhf (3.5.0-2) ... Setting up python3.5-minimal (3.5.0-2) ... Setting up libwebp5:armhf (0.4.3-1.3) ... Setting up libwebpmux1:armhf (0.4.3-1.3) ... Setting up libmagic1:armhf (1:5.22+15-2ubuntu1) ... Setting up file (1:5.22+15-2ubuntu1) ... Setting up gettext-base (0.19.4-1ubuntu3) ... Setting up shared-mime-info (1.3-1) ... Setting up libargtable2-0 (12-1.1) ... Setting up clustalo (1.2.1-1) ... Setting up clustalw (2.1+lgpl-4) ... Setting up gettext (0.19.4-1ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.2) ... Setting up po-debconf (1.0.18) ... Setting up debhelper (9.20150811ubuntu2) ... Setting up dialign (2.2.1-7) ... Setting up libboost-iostreams1.58.0:armhf (1.58.0+dfsg-0ubuntu5) ... Setting up libboost-program-options1.58.0:armhf (1.58.0+dfsg-0ubuntu5) ... Setting up libboost-system1.58.0:armhf (1.58.0+dfsg-0ubuntu5) ... Setting up libboost-thread1.58.0:armhf (1.58.0+dfsg-0ubuntu5) ... Setting up dssp (2.2.1-2ubuntu1) ... Setting up libvpx2:armhf (1.4.0-4) ... Setting up libgd3:armhf (2.1.1-4build1) ... Setting up libhpdf-2.2.1 (2.2.1-1.1) ... Setting up libpq5:armhf (9.4.4-1) ... Setting up emboss-lib (6.6.0+dfsg-1) ... Setting up emboss-data (6.6.0+dfsg-1) ... Setting up emboss (6.6.0+dfsg-1) ... Setting up fonts-lyx (2.1.4-2) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2ubuntu1) ... Setting up libblas-common (1.2.20110419-10) ... Setting up libblas3 (1.2.20110419-10) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libcups2:armhf (2.1.0-4ubuntu2) ... Setting up libexpat1-dev:armhf (2.1.0-7) ... Setting up libgdk-pixbuf2.0-common (2.32.0-1ubuntu1) ... Setting up libgdk-pixbuf2.0-0:armhf (2.32.0-1ubuntu1) ... Setting up libgfortran3:armhf (5.2.1-21ubuntu2) ... Setting up libgtk2.0-common (2.24.28-1ubuntu1) ... Setting up libxrandr2:armhf (2:1.5.0-1) ... Setting up libgtk2.0-0:armhf (2.24.28-1ubuntu1) ... Setting up libjs-jquery (1.7.2+dfsg-3ubuntu2) ... Setting up libjs-jquery-ui (1.10.1+dfsg-1) ... Setting up liblapack3 (3.5.0-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libpython2.7:armhf (2.7.10-4) ... Setting up libpython2.7-dev:armhf (2.7.10-4) ... Setting up libpython-dev:armhf (2.7.9-1) ... Setting up libpython-all-dev:armhf (2.7.9-1) ... Setting up libpython3.4:armhf (3.4.3-9) ... Setting up libpython3.4-dev:armhf (3.4.3-9) ... Setting up libpython3-dev:armhf (3.4.3-4ubuntu1) ... Setting up libpython3.5-stdlib:armhf (3.5.0-2) ... Setting up libpython3.5:armhf (3.5.0-2) ... Setting up libpython3.5-dev:armhf (3.5.0-2) ... Setting up libpython3-all-dev:armhf (3.4.3-4ubuntu1) ... Setting up mafft (7.245-1) ... Setting up muscle (1:3.8.31-1) ... Setting up ncbi-data (6.1.20120620-8) ... Setting up ncbi-blast+ (2.2.30-4build1) ... Setting up phyml (2:20120412-2) ... Setting up prank (0.0.140110-1) ... Setting up probcons (1.12-9) ... Setting up python-all (2.7.9-1) ... Setting up python2.7-dev (2.7.10-4) ... Setting up python-dev (2.7.9-1) ... Setting up python-all-dev (2.7.9-1) ... Setting up python-six (1.9.0-5) ... Setting up python-dateutil (2.2-2) ... Setting up python-funcsigs (0.4-1) ... Setting up python-isodate (0.5.1-2build1) ... Setting up python-matplotlib-data (1.4.2-3.1ubuntu1) ... Setting up python-pyparsing (2.0.3+dfsg1-1) ... Setting up python-tz (2014.10~dfsg1-0ubuntu2) ... Setting up python-numpy (1:1.8.2-1ubuntu2) ... Setting up python-pbr (1.8.0-2ubuntu1) ... update-alternatives: using /usr/bin/python2-pbr to provide /usr/bin/pbr (pbr) in auto mode Setting up python-mock (1.3.0-2.1ubuntu1) ... Setting up python-pkg-resources (18.3.1-2) ... Setting up python-nose (1.3.6-1) ... Setting up python-matplotlib (1.4.2-3.1ubuntu1) ... Setting up python-mysqldb (1.3.4-2) ... Setting up python-pil:armhf (2.9.0-1) ... Setting up python-psycopg2 (2.6.1-1build1) ... Setting up python-rdflib (4.1.2-3) ... Setting up python-renderpm:armhf (3.2.0-1build1) ... Setting up python-reportlab-accel:armhf (3.2.0-1build1) ... Setting up python-reportlab (3.2.0-1build1) ... Setting up python3.5 (3.5.0-2) ... Setting up python3.4-dev (3.4.3-9) ... Setting up python3.5-dev (3.5.0-2) ... Setting up t-coffee (11.00.8cbe486-1) ... Setting up wise-data (2.4.1-17) ... Setting up wise (2.4.1-17) ... Setting up fasttree (2.1.8-2) ... Setting up dh-python (2.20150826ubuntu1) ... Setting up python3 (3.4.3-4ubuntu1) ... Setting up python3-all (3.4.3-4ubuntu1) ... Setting up python3-dev (3.4.3-4ubuntu1) ... Setting up python3-all-dev (3.4.3-4ubuntu1) ... Setting up python3-six (1.9.0-5) ... Setting up python3-dateutil (2.2-2) ... Setting up python3-isodate (0.5.1-2build1) ... Setting up python3-pyparsing (2.0.3+dfsg1-1) ... Setting up python3-tz (2014.10~dfsg1-0ubuntu2) ... Setting up python3-numpy (1:1.8.2-1ubuntu2) ... Setting up python3-pkg-resources (18.3.1-2) ... Setting up python3-nose (1.3.6-1) ... Setting up python3-matplotlib (1.4.2-3.1ubuntu1) ... Setting up python3-pil:armhf (2.9.0-1) ... Setting up python3-psycopg2 (2.6.1-1build1) ... Setting up python3-rdflib (4.1.2-3) ... Setting up python3-renderpm:armhf (3.2.0-1build1) ... Setting up python3-reportlab-accel:armhf (3.2.0-1build1) ... Setting up python3-reportlab (3.2.0-1build1) ... Setting up sbuild-build-depends-python-biopython-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Processing triggers for systemd (225-1ubuntu7) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-84-highbank armhf (armv7l) Toolchain package versions: binutils_2.25.1-5ubuntu1 dpkg-dev_1.18.2ubuntu4 g++-5_5.2.1-21ubuntu2 gcc-5_5.2.1-21ubuntu2 libc6-dev_2.21-0ubuntu4 libstdc++-5-dev_5.2.1-21ubuntu2 libstdc++6_5.2.1-21ubuntu2 linux-libc-dev_4.2.0-14.16 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.19-1 apt_1.0.10.2ubuntu1 apt-transport-https_1.0.10.2ubuntu1 base-files_7.2ubuntu10 base-passwd_3.5.38 bash_4.3-14ubuntu1 binutils_2.25.1-5ubuntu1 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.26.2-6ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 clustalo_1.2.1-1 clustalw_2.1+lgpl-4 coreutils_8.23-3ubuntu1 cpp_4:5.2.1-3ubuntu1 cpp-5_5.2.1-21ubuntu2 dash_0.5.7-4ubuntu2 debconf_1.5.57ubuntu1 debhelper_9.20150811ubuntu2 debianutils_4.5.1 dh-python_2.20150826ubuntu1 dialign_2.2.1-7 diffutils_1:3.3-1 dmsetup_2:1.02.99-1ubuntu1 dpkg_1.18.2ubuntu4 dpkg-dev_1.18.2ubuntu4 dssp_2.2.1-2ubuntu1 e2fslibs_1.42.12-1ubuntu2 e2fsprogs_1.42.12-1ubuntu2 emboss_6.6.0+dfsg-1 emboss-data_6.6.0+dfsg-1 emboss-lib_6.6.0+dfsg-1 fakeroot_1.20.2-1ubuntu1 fasttree_2.1.8-2 file_1:5.22+15-2ubuntu1 findutils_4.4.2-9build1 flex_2.5.39-8 fontconfig_2.11.1-0ubuntu6 fontconfig-config_2.11.1-0ubuntu6 fonts-dejavu-core_2.35-1 fonts-lyx_2.1.4-2 g++_4:5.2.1-3ubuntu1 g++-5_5.2.1-21ubuntu2 gcc_4:5.2.1-3ubuntu1 gcc-5_5.2.1-21ubuntu2 gcc-5-base_5.2.1-21ubuntu2 gettext_0.19.4-1ubuntu3 gettext-base_0.19.4-1ubuntu3 gnupg_1.4.18-7ubuntu1 gpgv_1.4.18-7ubuntu1 grep_2.21-2 groff-base_1.22.3-1 gsfonts_1:8.11+urwcyr1.0.7~pre44-4.2ubuntu1 gzip_1.6-4ubuntu1 hostname_3.15ubuntu2 init_1.23ubuntu3 initscripts_2.88dsf-59.2ubuntu1 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.2 libacl1_2.2.52-2 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libcryptsetup4_2:1.6.6-5ubuntu2 libcups2_2.1.0-4ubuntu2 libcurl3-gnutls_7.43.0-1ubuntu2 libdatrie1_0.2.9-2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.0-1ubuntu1 libdebconfclient0_0.192ubuntu1 libdevmapper1.02.1_2:1.02.99-1ubuntu1 libdpkg-perl_1.18.2ubuntu4 libexpat1_2.1.0-7 libexpat1-dev_2.1.0-7 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.26.2-6ubuntu3 libffi6_3.2.1-3 libfl-dev_2.5.39-8 libfontconfig1_2.11.1-0ubuntu6 libfreetype6_2.5.2-4ubuntu2 libgcc-5-dev_5.2.1-21ubuntu2 libgcc1_1:5.2.1-21ubuntu2 libgcrypt20_1.6.3-2ubuntu1 libgd3_2.1.1-4build1 libgdbm3_1.8.3-13.1 libgdk-pixbuf2.0-0_2.32.0-1ubuntu1 libgdk-pixbuf2.0-common_2.32.0-1ubuntu1 libgfortran3_5.2.1-21ubuntu2 libglib2.0-0_2.46.0-2 libgmp10_2:6.0.0+dfsg-7 libgnutls-deb0-28_3.3.15-5ubuntu2 libgomp1_5.2.1-21ubuntu2 libgpg-error0_1.19-2 libgraphite2-3_1.2.4-3ubuntu1 libgssapi-krb5-2_1.13.2+dfsg-2 libgssapi3-heimdal_1.6~rc2+dfsg-10ubuntu1 libgtk2.0-0_2.24.28-1ubuntu1 libgtk2.0-common_2.24.28-1ubuntu1 libharfbuzz0b_1.0.1-1build1 libhcrypto4-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimbase1-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimntlm0-heimdal_1.6~rc2+dfsg-10ubuntu1 libhogweed4_3.1.1-4 libhpdf-2.2.1_2.2.1-1.1 libhx509-5-heimdal_1.6~rc2+dfsg-10ubuntu1 libicu55_55.1-4ubuntu1 libidn11_1.28-1ubuntu2 libisl13_0.14-2 libjbig0_2.1-3.1 libjpeg-turbo8_1.3.0-0ubuntu2 libjpeg8_8c-2ubuntu8 libjs-jquery_1.7.2+dfsg-3ubuntu2 libjs-jquery-ui_1.10.1+dfsg-1 libk5crypto3_1.13.2+dfsg-2 libkeyutils1_1.5.9-5ubuntu1 libkmod2_21-1ubuntu1 libkrb5-26-heimdal_1.6~rc2+dfsg-10ubuntu1 libkrb5-3_1.13.2+dfsg-2 libkrb5support0_1.13.2+dfsg-2 liblapack3_3.5.0-4 liblcms2-2_2.6-3ubuntu2 libldap-2.4-2_2.4.41+dfsg-1ubuntu2 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.22+15-2ubuntu1 libmount1_2.26.2-6ubuntu3 libmpc3_1.0.3-1 libmpdec2_2.4.1-1 libmpfr4_3.1.3-1 libmysqlclient18_5.6.25-0ubuntu1 libncurses5_5.9+20150516-2ubuntu1 libncursesw5_5.9+20150516-2ubuntu1 libnettle6_3.1.1-4 libnih-dbus1_1.0.3-4ubuntu27 libnih1_1.0.3-4ubuntu27 libp11-kit0_0.23.1-3 libpam-modules_1.1.8-3.1ubuntu3 libpam-modules-bin_1.1.8-3.1ubuntu3 libpam-runtime_1.1.8-3.1ubuntu3 libpam0g_1.1.8-3.1ubuntu3 libpango-1.0-0_1.36.8-3 libpangocairo-1.0-0_1.36.8-3 libpangoft2-1.0-0_1.36.8-3 libpcre3_2:8.35-7.1ubuntu1 libpipeline1_1.4.1-1 libpixman-1-0_0.32.6-3 libpng12-0_1.2.51-0ubuntu3 libpq5_9.4.4-1 libprocps3_1:3.3.9-1ubuntu8 libpython-all-dev_2.7.9-1 libpython-dev_2.7.9-1 libpython-stdlib_2.7.9-1 libpython2.7_2.7.10-4 libpython2.7-dev_2.7.10-4 libpython2.7-minimal_2.7.10-4 libpython2.7-stdlib_2.7.10-4 libpython3-all-dev_3.4.3-4ubuntu1 libpython3-dev_3.4.3-4ubuntu1 libpython3-stdlib_3.4.3-4ubuntu1 libpython3.4_3.4.3-9 libpython3.4-dev_3.4.3-9 libpython3.4-minimal_3.4.3-9 libpython3.4-stdlib_3.4.3-9 libpython3.5_3.5.0-2 libpython3.5-dev_3.5.0-2 libpython3.5-minimal_3.5.0-2 libpython3.5-stdlib_3.5.0-2 libreadline6_6.3-8ubuntu1 libroken18-heimdal_1.6~rc2+dfsg-10ubuntu1 librtmp1_2.4+20150115.gita107cef-1build1 libsasl2-2_2.1.26.dfsg1-14 libsasl2-modules-db_2.1.26.dfsg1-14 libseccomp2_2.2.3-2ubuntu1 libselinux1_2.3-2build1 libsemanage-common_2.3-1build2 libsemanage1_2.3-1build2 libsepol1_2.3-2 libsigsegv2_2.10-4 libslang2_2.3.0-2ubuntu1 libsmartcols1_2.26.2-6ubuntu3 libsqlite3-0_3.8.11.1-1 libss2_1.42.12-1ubuntu2 libssl1.0.0_1.0.2d-0ubuntu1 libstdc++-5-dev_5.2.1-21ubuntu2 libstdc++6_5.2.1-21ubuntu2 libsystemd0_225-1ubuntu7 libtasn1-6_4.5-2 libtcl8.6_8.6.4+dfsg-2ubuntu1 libthai-data_0.1.22-2 libthai0_0.1.22-2 libtiff5_4.0.3-12.3ubuntu2 libtimedate-perl_2.3000-2 libtinfo5_5.9+20150516-2ubuntu1 libtk8.6_8.6.4+dfsg-2ubuntu1 libubsan0_5.2.1-21ubuntu2 libudev1_225-1ubuntu7 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.26.2-6ubuntu3 libvpx2_1.4.0-4 libwebp5_0.4.3-1.3 libwebpmux1_0.4.3-1.3 libwind0-heimdal_1.6~rc2+dfsg-10ubuntu1 libx11-6_2:1.6.3-1ubuntu2 libx11-data_2:1.6.3-1ubuntu2 libxau6_1:1.0.8-1 libxcb-render0_1.11-0ubuntu1 libxcb-shm0_1.11-0ubuntu1 libxcb1_1.11-0ubuntu1 libxcomposite1_1:0.4.4-1 libxcursor1_1:1.1.14-1 libxdamage1_1:1.1.4-2 libxdmcp6_1:1.1.2-1 libxext6_2:1.3.3-1 libxfixes3_1:5.0.1-2 libxft2_2.3.2-1 libxi6_2:1.7.4-1 libxinerama1_2:1.1.3-1 libxml2_2.9.2+zdfsg1-4 libxpm4_1:3.5.11-1 libxrandr2_2:1.5.0-1 libxrender1_1:0.9.9-0ubuntu1 libxss1_1:1.2.2-1 linux-libc-dev_4.2.0-14.16 lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu7 lsb-base_4.1+Debian11ubuntu8 m4_1.4.17-4 mafft_7.245-1 make_4.0-8.2 man-db_2.7.3-1 mawk_1.3.3-17ubuntu2 mime-support_3.58ubuntu1 mount_2.26.2-6ubuntu3 multiarch-support_2.21-0ubuntu4 muscle_1:3.8.31-1 mysql-common_5.6.25-0ubuntu1 ncbi-blast+_2.2.30-4build1 ncbi-data_6.1.20120620-8 ncurses-base_5.9+20150516-2ubuntu1 ncurses-bin_5.9+20150516-2ubuntu1 openssl_1.0.2d-0ubuntu1 optipng_0.7.5-1 passwd_1:4.1.5.1-1.1ubuntu7 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 phyml_2:20120412-2 pkg-create-dbgsym_0.69 pkgbinarymangler_122.2 po-debconf_1.0.18 policyrcd-script-zg2_0.1-2 prank_0.0.140110-1 probcons_1.12-9 procps_1:3.3.9-1ubuntu8 python_2.7.9-1 python-all_2.7.9-1 python-all-dev_2.7.9-1 python-dateutil_2.2-2 python-dev_2.7.9-1 python-funcsigs_0.4-1 python-isodate_0.5.1-2build1 python-matplotlib_1.4.2-3.1ubuntu1 python-matplotlib-data_1.4.2-3.1ubuntu1 python-minimal_2.7.9-1 python-mock_1.3.0-2.1ubuntu1 python-mysqldb_1.3.4-2 python-nose_1.3.6-1 python-numpy_1:1.8.2-1ubuntu2 python-pbr_1.8.0-2ubuntu1 python-pil_2.9.0-1 python-pkg-resources_18.3.1-2 python-psycopg2_2.6.1-1build1 python-pyparsing_2.0.3+dfsg1-1 python-rdflib_4.1.2-3 python-renderpm_3.2.0-1build1 python-reportlab_3.2.0-1build1 python-reportlab-accel_3.2.0-1build1 python-six_1.9.0-5 python-tz_2014.10~dfsg1-0ubuntu2 python2.7_2.7.10-4 python2.7-dev_2.7.10-4 python2.7-minimal_2.7.10-4 python3_3.4.3-4ubuntu1 python3-all_3.4.3-4ubuntu1 python3-all-dev_3.4.3-4ubuntu1 python3-dateutil_2.2-2 python3-dev_3.4.3-4ubuntu1 python3-isodate_0.5.1-2build1 python3-matplotlib_1.4.2-3.1ubuntu1 python3-minimal_3.4.3-4ubuntu1 python3-nose_1.3.6-1 python3-numpy_1:1.8.2-1ubuntu2 python3-pil_2.9.0-1 python3-pkg-resources_18.3.1-2 python3-psycopg2_2.6.1-1build1 python3-pyparsing_2.0.3+dfsg1-1 python3-rdflib_4.1.2-3 python3-renderpm_3.2.0-1build1 python3-reportlab_3.2.0-1build1 python3-reportlab-accel_3.2.0-1build1 python3-six_1.9.0-5 python3-tz_2014.10~dfsg1-0ubuntu2 python3.4_3.4.3-9 python3.4-dev_3.4.3-9 python3.4-minimal_3.4.3-9 python3.5_3.5.0-2 python3.5-dev_3.5.0-2 python3.5-minimal_3.5.0-2 readline-common_6.3-8ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-biopython-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 shared-mime-info_1.3-1 systemd_225-1ubuntu7 systemd-sysv_225-1ubuntu7 sysv-rc_2.88dsf-59.2ubuntu1 sysvinit-utils_2.88dsf-59.2ubuntu1 t-coffee_11.00.8cbe486-1 tar_1.27.1-2 tzdata_2015f-1 ubuntu-keyring_2012.05.19 ucf_3.0030 udev_225-1ubuntu7 util-linux_2.26.2-6ubuntu3 wise_2.4.1-17 wise-data_2.4.1-17 x11-common_1:7.7+7ubuntu4 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu4 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Tue May 12 09:17:27 2015 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./python-biopython_1.65+dfsg-1.dsc dpkg-source: info: extracting python-biopython in python-biopython-1.65+dfsg dpkg-source: info: unpacking python-biopython_1.65+dfsg.orig.tar.xz dpkg-source: info: unpacking python-biopython_1.65+dfsg-1.debian.tar.xz dpkg-source: info: applying remove_mathml-qname.patch dpkg-source: info: applying fix_broken_test.patch dpkg-source: info: applying privacy_breach.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C LANGUAGE=en_GB: LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«BUILDDIR»/python-biopython-1.65+dfsg SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«BUILDDIR»/python-biopython-1.65+dfsg' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package python-biopython dpkg-buildpackage: source version 1.65+dfsg-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build python-biopython-1.65+dfsg dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean dh clean --with python2,python3 --buildsystem=pybuild dh_testdir -O--buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/«BUILDDIR»/python-biopython-1.65+dfsg' dh_auto_clean pybuild --clean -i python{version} -p 2.7 --dir . I: pybuild base:170: python2.7 setup.py clean running clean removing '/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it pybuild --clean -i python{version} -p "3.4 3.5" --dir . I: pybuild base:170: python3.4 setup.py clean running clean removing '/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.4' does not exist -- can't clean it I: pybuild base:170: python3.5 setup.py clean running clean removing '/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.5' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; if [ -d Tests_avoid ] ; then \ mv Tests_avoid/* Tests ; \ rmdir Tests_avoid ; \ fi rm -rf debian/tmp_tests make[1]: Leaving directory '/«BUILDDIR»/python-biopython-1.65+dfsg' dh_clean -O--buildsystem=pybuild rm -f debian/python-biopython.substvars rm -f debian/python-biopython.*.debhelper rm -rf debian/python-biopython/ rm -f debian/python3-biopython.substvars rm -f debian/python3-biopython.*.debhelper rm -rf debian/python3-biopython/ rm -f debian/python-biopython-doc.substvars rm -f debian/python-biopython-doc.*.debhelper rm -rf debian/python-biopython-doc/ rm -f debian/python-biopython-sql.substvars rm -f debian/python-biopython-sql.*.debhelper rm -rf debian/python-biopython-sql/ rm -f debian/python3-biopython-sql.substvars rm -f debian/python3-biopython-sql.*.debhelper rm -rf debian/python3-biopython-sql/ rm -rf debian/.debhelper/ rm -f debian/*.debhelper.log rm -f -- debian/tmp_tests rm -f debian/files find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f *-stamp debian/rules build-arch dh build-arch --with python2,python3 --buildsystem=pybuild dh_testdir -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild pybuild --configure -i python{version} -p 2.7 --dir . I: pybuild base:170: python2.7 setup.py config running config pybuild --configure -i python{version} -p "3.5 3.4" --dir . I: pybuild base:170: python3.5 setup.py config running config I: pybuild base:170: python3.4 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild pybuild --build -i python{version} -p 2.7 --dir . I: pybuild base:170: /usr/bin/python setup.py build running build running build_py creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/LogisticRegression.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/Index.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/ParserSupport.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/kNN.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/DocSQL.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/triefind.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/MaxEntropy.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/NaiveBayes.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/pairwise2.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/SeqRecord.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/Seq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/_utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/SeqFeature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/bgzf.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/File.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/MarkovModel.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align copying Bio/Align/AlignInfo.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align copying Bio/Align/Generic.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align copying Bio/Align/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Alphabet copying Bio/Alphabet/IUPAC.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Alphabet copying Bio/Alphabet/Reduced.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Alphabet creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Application copying Bio/Application/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Application creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast copying Bio/Blast/Record.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast copying Bio/Blast/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast copying Bio/Blast/Applications.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast copying Bio/Blast/NCBIStandalone.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/CAPS creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/codonalign copying Bio/codonalign/chisq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/codonalign copying Bio/codonalign/codonalphabet.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/codonalign creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Compass copying Bio/Compass/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Compass creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Crystal copying Bio/Crystal/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Crystal creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Data copying Bio/Data/SCOPData.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Data copying Bio/Data/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Data copying Bio/Data/CodonTable.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Data copying Bio/Data/IUPACData.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Data creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Emboss creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/ExPASy creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/FSSP copying Bio/FSSP/FSSPTools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/FSSP copying Bio/FSSP/fssp_rec.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/FSSP copying Bio/FSSP/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/FSSP creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA copying Bio/GA/Evolver.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA copying Bio/GA/Organism.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA copying Bio/GA/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Crossover copying Bio/GA/Crossover/GeneralPoint.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Crossover copying Bio/GA/Crossover/Uniform.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Crossover copying Bio/GA/Crossover/TwoPoint.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Crossover copying Bio/GA/Crossover/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Crossover copying Bio/GA/Crossover/General.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Crossover copying Bio/GA/Crossover/Point.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Crossover creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Mutation copying Bio/GA/Mutation/Simple.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Mutation copying Bio/GA/Mutation/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Mutation copying Bio/GA/Mutation/General.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Mutation creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Repair copying Bio/GA/Repair/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Repair copying Bio/GA/Repair/Stabilizing.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Repair creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Selection copying Bio/GA/Selection/Tournament.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Selection copying Bio/GA/Selection/Diversity.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Selection copying Bio/GA/Selection/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Selection copying Bio/GA/Selection/Abstract.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Selection copying Bio/GA/Selection/RouletteWheel.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Selection creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GenBank copying Bio/GenBank/utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GenBank copying Bio/GenBank/Record.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GenBank creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Geo copying Bio/Geo/Record.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Geo copying Bio/Geo/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Geo creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/HMM copying Bio/HMM/Utilities.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/HMM copying Bio/HMM/Trainer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/HMM copying Bio/HMM/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/HMM creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG copying Bio/KEGG/REST.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG/Compound creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG/Enzyme creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG/Map creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG/KGML creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Medline copying Bio/Medline/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Medline creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif copying Bio/Motif/Thresholds.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif copying Bio/Motif/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif copying Bio/Motif/_Motif.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/AlignAce.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/MEME.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/MAST.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif/Parsers creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif/Applications copying Bio/Motif/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs copying Bio/motifs/meme.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs copying Bio/motifs/alignace.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs copying Bio/motifs/thresholds.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs copying Bio/motifs/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs copying Bio/motifs/transfac.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs copying Bio/motifs/matrix.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs copying Bio/motifs/mast.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/applications copying Bio/motifs/applications/_alignace.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/jaspar creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork copying Bio/NeuralNetwork/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork copying Bio/NeuralNetwork/StopTraining.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork copying Bio/NeuralNetwork/Training.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/Layer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/Network.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork/BackPropagation creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Pattern.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Schema.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Motif.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Signature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork/Gene creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Nexus creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NMR copying Bio/NMR/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NMR copying Bio/NMR/xpktools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NMR creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Pathway creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Pathway/Rep creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/Chain.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/Vector.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/PSEA.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/Model.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/Residue.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/Structure.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/PDBList.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/MMCIFParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/Dice.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/DSSP.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/Entity.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/Atom.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/Polypeptide.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/Selection.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/Async copying Bio/PopGen/Async/Local.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/Async copying Bio/PopGen/Async/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/Async creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/Utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/Controller.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/Async.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/FDist creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/GenePop creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Template.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Controller.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Async.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Cache.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Restriction copying Bio/Restriction/RanaConfig.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Restriction creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SCOP copying Bio/SCOP/Des.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SCOP copying Bio/SCOP/three_to_one_dict.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SCOP creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/_model creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/BlastIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/HmmerIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/ExonerateIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/_convert.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Sequencing creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Sequencing/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Statistics copying Bio/Statistics/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Statistics copying Bio/Statistics/lowess.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Statistics creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SubsMat copying Bio/SubsMat/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SubsMat creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SVDSuperimposer creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SwissProt creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/TogoWS creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/_io.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/PAML creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/UniGene creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/UniProt creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Wise copying Bio/Wise/psw.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Wise copying Bio/Wise/dnal.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Wise copying Bio/Wise/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Wise creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/_py3k copying Bio/_py3k/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/_py3k copying Bio/_py3k/_ordereddict.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/_py3k creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/BioSQL copying BioSQL/DBUtils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/BioSQL copying BioSQL/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/BioSQL copying BioSQL/Loader.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/BioSQL copying BioSQL/BioSeq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/BioSQL creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Affy copying Bio/Affy/CelFile.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Affy copying Bio/Affy/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Affy creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Cluster creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KDTree copying Bio/KDTree/KDTree.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KDTree copying Bio/KDTree/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KDTree creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> 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/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/simple.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/ssm_1d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/decline_split.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/decline_lambda.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_ssm_2d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/bottle.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_ssm_1d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/ssm_2d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/island.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_island.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data running build_ext building 'Bio.cpairwise2' extension creating build creating build/temp.linux-armv7l-2.7 creating build/temp.linux-armv7l-2.7/Bio arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/cpairwise2module.c -o build/temp.linux-armv7l-2.7/Bio/cpairwise2module.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/Bio/cpairwise2module.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/cpairwise2.so building 'Bio.trie' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python2.7 -c Bio/triemodule.c -o build/temp.linux-armv7l-2.7/Bio/triemodule.o arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python2.7 -c Bio/trie.c -o build/temp.linux-armv7l-2.7/Bio/trie.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/Bio/triemodule.o build/temp.linux-armv7l-2.7/Bio/trie.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/trie.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-armv7l-2.7/Bio/Nexus arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/Nexus/cnexus.c -o build/temp.linux-armv7l-2.7/Bio/Nexus/cnexus.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/Bio/Nexus/cnexus.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Nexus/cnexus.so building 'Bio.Cluster.cluster' extension creating build/temp.linux-armv7l-2.7/Bio/Cluster arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/Cluster/clustermodule.c -o build/temp.linux-armv7l-2.7/Bio/Cluster/clustermodule.o arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/Cluster/cluster.c -o build/temp.linux-armv7l-2.7/Bio/Cluster/cluster.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/Bio/Cluster/clustermodule.o build/temp.linux-armv7l-2.7/Bio/Cluster/cluster.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Cluster/cluster.so building 'Bio.KDTree._CKDTree' extension creating build/temp.linux-armv7l-2.7/Bio/KDTree arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/KDTree/KDTree.c -o build/temp.linux-armv7l-2.7/Bio/KDTree/KDTree.o arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/KDTree/KDTreemodule.c -o build/temp.linux-armv7l-2.7/Bio/KDTree/KDTreemodule.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/Bio/KDTree/KDTree.o build/temp.linux-armv7l-2.7/Bio/KDTree/KDTreemodule.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KDTree/_CKDTree.so building 'Bio.Motif._pwm' extension creating build/temp.linux-armv7l-2.7/Bio/Motif arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/Motif/_pwm.c -o build/temp.linux-armv7l-2.7/Bio/Motif/_pwm.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/Bio/Motif/_pwm.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif/_pwm.so building 'Bio.motifs._pwm' extension creating build/temp.linux-armv7l-2.7/Bio/motifs arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/motifs/_pwm.c -o build/temp.linux-armv7l-2.7/Bio/motifs/_pwm.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/Bio/motifs/_pwm.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/_pwm.so pybuild --build -i python{version} -p "3.4 3.5" --dir . I: pybuild base:170: /usr/bin/python3 setup.py build running build running build_py creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/LogisticRegression.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/Index.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/ParserSupport.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/kNN.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/DocSQL.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/triefind.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/MaxEntropy.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/NaiveBayes.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/pairwise2.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/SeqRecord.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/Seq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/_utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/SeqFeature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/bgzf.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/File.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/MarkovModel.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align copying Bio/Align/AlignInfo.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align copying Bio/Align/Generic.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align copying Bio/Align/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Alphabet copying Bio/Alphabet/IUPAC.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Alphabet copying Bio/Alphabet/Reduced.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Alphabet creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Application copying Bio/Application/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Application creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast copying Bio/Blast/Record.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast copying Bio/Blast/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast copying Bio/Blast/Applications.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast copying Bio/Blast/NCBIStandalone.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/CAPS creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/codonalign copying Bio/codonalign/chisq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/codonalign copying Bio/codonalign/codonalphabet.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/codonalign creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Compass copying Bio/Compass/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Compass creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Crystal copying Bio/Crystal/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Crystal creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Data copying Bio/Data/SCOPData.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Data copying Bio/Data/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Data copying Bio/Data/CodonTable.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Data copying Bio/Data/IUPACData.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Data creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Emboss creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/ExPASy creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/FSSP copying Bio/FSSP/FSSPTools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/FSSP copying Bio/FSSP/fssp_rec.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/FSSP copying Bio/FSSP/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/FSSP creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA copying Bio/GA/Evolver.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA copying Bio/GA/Organism.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA copying Bio/GA/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Crossover copying Bio/GA/Crossover/GeneralPoint.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Crossover copying Bio/GA/Crossover/Uniform.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Crossover copying Bio/GA/Crossover/TwoPoint.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Crossover copying Bio/GA/Crossover/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Crossover copying Bio/GA/Crossover/General.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Crossover copying Bio/GA/Crossover/Point.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Crossover creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Mutation copying Bio/GA/Mutation/Simple.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Mutation copying Bio/GA/Mutation/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Mutation copying Bio/GA/Mutation/General.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Mutation creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Repair copying Bio/GA/Repair/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Repair copying Bio/GA/Repair/Stabilizing.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Repair creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Selection copying Bio/GA/Selection/Tournament.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Selection copying Bio/GA/Selection/Diversity.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Selection copying Bio/GA/Selection/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Selection copying Bio/GA/Selection/Abstract.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Selection copying Bio/GA/Selection/RouletteWheel.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Selection creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GenBank copying Bio/GenBank/utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GenBank copying Bio/GenBank/Record.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GenBank creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Geo copying Bio/Geo/Record.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Geo copying Bio/Geo/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Geo creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/HMM copying Bio/HMM/Utilities.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/HMM copying Bio/HMM/Trainer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/HMM copying Bio/HMM/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/HMM creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG copying Bio/KEGG/REST.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG/Compound creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG/Enzyme creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG/Map creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG/KGML creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Medline copying Bio/Medline/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Medline creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif copying Bio/Motif/Thresholds.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif copying Bio/Motif/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif copying Bio/Motif/_Motif.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/AlignAce.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/MEME.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/MAST.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif/Parsers creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif/Applications copying Bio/Motif/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs copying Bio/motifs/meme.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs copying Bio/motifs/alignace.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs copying Bio/motifs/thresholds.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs copying Bio/motifs/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs copying Bio/motifs/transfac.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs copying Bio/motifs/matrix.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs copying Bio/motifs/mast.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs/applications copying Bio/motifs/applications/_alignace.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs/applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs/jaspar creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork copying Bio/NeuralNetwork/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork copying Bio/NeuralNetwork/StopTraining.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork copying Bio/NeuralNetwork/Training.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/Layer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/Network.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork/BackPropagation creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Pattern.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Schema.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Motif.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Signature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork/Gene creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Nexus creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NMR copying Bio/NMR/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NMR copying Bio/NMR/xpktools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NMR creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Pathway creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Pathway/Rep creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/Chain.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/Vector.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/PSEA.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/Model.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/Residue.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/Structure.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/PDBList.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/MMCIFParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/Dice.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/DSSP.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/Entity.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/Atom.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/Polypeptide.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/Selection.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/Async copying Bio/PopGen/Async/Local.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/Async copying Bio/PopGen/Async/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/Async creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/Utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/Controller.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/Async.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/FDist creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/GenePop creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Template.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Controller.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Async.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Cache.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Restriction copying Bio/Restriction/RanaConfig.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Restriction creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SCOP copying Bio/SCOP/Des.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SCOP copying Bio/SCOP/three_to_one_dict.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SCOP creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/_model creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/BlastIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/HmmerIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/ExonerateIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/_convert.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqUtils creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Sequencing creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Sequencing/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Statistics copying Bio/Statistics/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Statistics copying Bio/Statistics/lowess.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Statistics creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SubsMat copying Bio/SubsMat/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SubsMat creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SVDSuperimposer creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SwissProt creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/TogoWS creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/_io.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/PAML creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/UniGene creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/UniProt creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Wise copying Bio/Wise/psw.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Wise copying Bio/Wise/dnal.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Wise copying Bio/Wise/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Wise creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/_py3k copying Bio/_py3k/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/_py3k copying Bio/_py3k/_ordereddict.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/_py3k creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/BioSQL copying BioSQL/DBUtils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/BioSQL copying BioSQL/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/BioSQL copying BioSQL/Loader.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/BioSQL copying BioSQL/BioSeq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/BioSQL creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Affy copying Bio/Affy/CelFile.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Affy copying Bio/Affy/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Affy creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Cluster creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KDTree copying Bio/KDTree/KDTree.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KDTree copying Bio/KDTree/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KDTree creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> 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copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/simple.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/ssm_1d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/decline_split.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/decline_lambda.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_ssm_2d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/bottle.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_ssm_1d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/ssm_2d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/island.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_island.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data running build_ext building 'Bio.cpairwise2' extension creating build/temp.linux-armv7l-3.4 creating build/temp.linux-armv7l-3.4/Bio arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.4m -c Bio/cpairwise2module.c -o build/temp.linux-armv7l-3.4/Bio/cpairwise2module.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/Bio/cpairwise2module.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/cpairwise2.cpython-34m.so building 'Bio.trie' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python3.4m -c Bio/triemodule.c -o build/temp.linux-armv7l-3.4/Bio/triemodule.o Bio/triemodule.c:568:5: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types] trie_nohash, /*tp_hash */ ^ Bio/triemodule.c:568:5: note: (near initialization for ‘Trie_Type.tp_hash’) arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python3.4m -c Bio/trie.c -o build/temp.linux-armv7l-3.4/Bio/trie.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/Bio/triemodule.o build/temp.linux-armv7l-3.4/Bio/trie.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/trie.cpython-34m.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-armv7l-3.4/Bio/Nexus arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.4m -c Bio/Nexus/cnexus.c -o build/temp.linux-armv7l-3.4/Bio/Nexus/cnexus.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/Bio/Nexus/cnexus.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Nexus/cnexus.cpython-34m.so building 'Bio.Cluster.cluster' extension creating build/temp.linux-armv7l-3.4/Bio/Cluster arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.4m -c Bio/Cluster/clustermodule.c -o build/temp.linux-armv7l-3.4/Bio/Cluster/clustermodule.o arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.4m -c Bio/Cluster/cluster.c -o build/temp.linux-armv7l-3.4/Bio/Cluster/cluster.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/Bio/Cluster/clustermodule.o build/temp.linux-armv7l-3.4/Bio/Cluster/cluster.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Cluster/cluster.cpython-34m.so building 'Bio.KDTree._CKDTree' extension creating build/temp.linux-armv7l-3.4/Bio/KDTree arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.4m -c Bio/KDTree/KDTree.c -o build/temp.linux-armv7l-3.4/Bio/KDTree/KDTree.o arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.4m -c Bio/KDTree/KDTreemodule.c -o build/temp.linux-armv7l-3.4/Bio/KDTree/KDTreemodule.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/Bio/KDTree/KDTree.o build/temp.linux-armv7l-3.4/Bio/KDTree/KDTreemodule.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KDTree/_CKDTree.cpython-34m.so building 'Bio.Motif._pwm' extension creating build/temp.linux-armv7l-3.4/Bio/Motif arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.4m -c Bio/Motif/_pwm.c -o build/temp.linux-armv7l-3.4/Bio/Motif/_pwm.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/Bio/Motif/_pwm.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif/_pwm.cpython-34m.so building 'Bio.motifs._pwm' extension creating build/temp.linux-armv7l-3.4/Bio/motifs arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.4m -c Bio/motifs/_pwm.c -o build/temp.linux-armv7l-3.4/Bio/motifs/_pwm.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.4/Bio/motifs/_pwm.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs/_pwm.cpython-34m.so I: pybuild base:170: /usr/bin/python3.5 setup.py build running build running build_py creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/LogisticRegression.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/Index.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/ParserSupport.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/kNN.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/DocSQL.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/triefind.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/MaxEntropy.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/NaiveBayes.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/pairwise2.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/SeqRecord.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/Seq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/_utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/SeqFeature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/bgzf.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/File.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/MarkovModel.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align copying Bio/Align/AlignInfo.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align copying Bio/Align/Generic.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align copying Bio/Align/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/AlignIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Alphabet copying Bio/Alphabet/IUPAC.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Alphabet copying Bio/Alphabet/Reduced.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Alphabet creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Application copying Bio/Application/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Application creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Blast copying Bio/Blast/Record.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Blast copying Bio/Blast/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Blast copying Bio/Blast/Applications.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Blast copying Bio/Blast/NCBIStandalone.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Blast creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/CAPS creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/codonalign copying Bio/codonalign/chisq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/codonalign copying Bio/codonalign/codonalphabet.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/codonalign creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Compass copying Bio/Compass/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Compass creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Crystal copying Bio/Crystal/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Crystal creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Data copying Bio/Data/SCOPData.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Data copying Bio/Data/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Data copying Bio/Data/CodonTable.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Data copying Bio/Data/IUPACData.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Data creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Emboss creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/ExPASy creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/FSSP copying Bio/FSSP/FSSPTools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/FSSP copying Bio/FSSP/fssp_rec.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/FSSP copying Bio/FSSP/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/FSSP creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA copying Bio/GA/Evolver.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA copying Bio/GA/Organism.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA copying Bio/GA/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Crossover copying Bio/GA/Crossover/GeneralPoint.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Crossover copying Bio/GA/Crossover/Uniform.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Crossover copying Bio/GA/Crossover/TwoPoint.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Crossover copying Bio/GA/Crossover/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Crossover copying Bio/GA/Crossover/General.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Crossover copying Bio/GA/Crossover/Point.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Crossover creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Mutation copying Bio/GA/Mutation/Simple.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Mutation copying Bio/GA/Mutation/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Mutation copying Bio/GA/Mutation/General.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Mutation creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Repair copying Bio/GA/Repair/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Repair copying Bio/GA/Repair/Stabilizing.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Repair creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Selection copying Bio/GA/Selection/Tournament.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Selection copying Bio/GA/Selection/Diversity.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Selection copying Bio/GA/Selection/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Selection copying Bio/GA/Selection/Abstract.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Selection copying Bio/GA/Selection/RouletteWheel.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Selection creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GenBank copying Bio/GenBank/utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GenBank copying Bio/GenBank/Record.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GenBank creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Geo copying Bio/Geo/Record.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Geo copying Bio/Geo/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Geo creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/HMM copying Bio/HMM/Utilities.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/HMM copying Bio/HMM/Trainer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/HMM copying Bio/HMM/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/HMM creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG copying Bio/KEGG/REST.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG/Compound creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG/Enzyme creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG/Map creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG/KGML creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Medline copying Bio/Medline/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Medline creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif copying Bio/Motif/Thresholds.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif copying Bio/Motif/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif copying Bio/Motif/_Motif.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/AlignAce.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/MEME.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/MAST.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif/Parsers creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif/Applications copying Bio/Motif/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs copying Bio/motifs/meme.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs copying Bio/motifs/alignace.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs copying Bio/motifs/thresholds.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs copying Bio/motifs/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs copying Bio/motifs/transfac.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs copying Bio/motifs/matrix.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs copying Bio/motifs/mast.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/applications copying Bio/motifs/applications/_alignace.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/jaspar creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork copying Bio/NeuralNetwork/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork copying Bio/NeuralNetwork/StopTraining.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork copying Bio/NeuralNetwork/Training.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/Layer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/Network.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/BackPropagation creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Pattern.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Schema.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Motif.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Signature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/Gene creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Nexus creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NMR copying Bio/NMR/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NMR copying Bio/NMR/xpktools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NMR creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Pathway creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Pathway/Rep creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/Chain.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/Vector.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/PSEA.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/Model.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/Residue.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/Structure.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/PDBList.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/MMCIFParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/Dice.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/DSSP.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/Entity.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/Atom.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/Polypeptide.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/Selection.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/Async copying Bio/PopGen/Async/Local.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/Async copying Bio/PopGen/Async/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/Async creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/Utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/Controller.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/Async.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/FDist creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/GenePop creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Template.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Controller.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Async.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Cache.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Restriction copying Bio/Restriction/RanaConfig.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Restriction creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SCOP copying Bio/SCOP/Des.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SCOP copying Bio/SCOP/three_to_one_dict.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SCOP creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/_model creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/BlastIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/HmmerIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/ExonerateIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/_convert.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Sequencing creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Sequencing/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Statistics copying Bio/Statistics/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Statistics copying Bio/Statistics/lowess.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Statistics creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SubsMat copying Bio/SubsMat/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SubsMat creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SVDSuperimposer creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SwissProt creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/TogoWS creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/_io.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/PAML creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/UniGene creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/UniProt creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Wise copying Bio/Wise/psw.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Wise copying Bio/Wise/dnal.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Wise copying Bio/Wise/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Wise creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/_py3k copying Bio/_py3k/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/_py3k copying Bio/_py3k/_ordereddict.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/_py3k creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/BioSQL copying BioSQL/DBUtils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/BioSQL copying BioSQL/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/BioSQL copying BioSQL/Loader.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/BioSQL copying BioSQL/BioSeq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/BioSQL creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Affy copying Bio/Affy/CelFile.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Affy copying Bio/Affy/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Affy creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Cluster creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KDTree copying Bio/KDTree/KDTree.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KDTree copying Bio/KDTree/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KDTree creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> 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Bio/Entrez/DTDs/para.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/simple.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/ssm_1d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/decline_split.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/decline_lambda.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_ssm_2d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/bottle.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_ssm_1d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/ssm_2d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/island.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_island.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data running build_ext building 'Bio.cpairwise2' extension creating build/temp.linux-armv7l-3.5 creating build/temp.linux-armv7l-3.5/Bio arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c Bio/cpairwise2module.c -o build/temp.linux-armv7l-3.5/Bio/cpairwise2module.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/Bio/cpairwise2module.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/cpairwise2.cpython-35m-arm-linux-gnueabihf.so building 'Bio.trie' extension arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python3.5m -c Bio/triemodule.c -o build/temp.linux-armv7l-3.5/Bio/triemodule.o Bio/triemodule.c:568:5: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types] trie_nohash, /*tp_hash */ ^ Bio/triemodule.c:568:5: note: (near initialization for ‘Trie_Type.tp_hash’) arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python3.5m -c Bio/trie.c -o build/temp.linux-armv7l-3.5/Bio/trie.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/Bio/triemodule.o build/temp.linux-armv7l-3.5/Bio/trie.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/trie.cpython-35m-arm-linux-gnueabihf.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-armv7l-3.5/Bio/Nexus arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c Bio/Nexus/cnexus.c -o build/temp.linux-armv7l-3.5/Bio/Nexus/cnexus.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/Bio/Nexus/cnexus.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Nexus/cnexus.cpython-35m-arm-linux-gnueabihf.so building 'Bio.Cluster.cluster' extension creating build/temp.linux-armv7l-3.5/Bio/Cluster arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c Bio/Cluster/clustermodule.c -o build/temp.linux-armv7l-3.5/Bio/Cluster/clustermodule.o arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c Bio/Cluster/cluster.c -o build/temp.linux-armv7l-3.5/Bio/Cluster/cluster.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/Bio/Cluster/clustermodule.o build/temp.linux-armv7l-3.5/Bio/Cluster/cluster.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Cluster/cluster.cpython-35m-arm-linux-gnueabihf.so building 'Bio.KDTree._CKDTree' extension creating build/temp.linux-armv7l-3.5/Bio/KDTree arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c Bio/KDTree/KDTree.c -o build/temp.linux-armv7l-3.5/Bio/KDTree/KDTree.o arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c Bio/KDTree/KDTreemodule.c -o build/temp.linux-armv7l-3.5/Bio/KDTree/KDTreemodule.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/Bio/KDTree/KDTree.o build/temp.linux-armv7l-3.5/Bio/KDTree/KDTreemodule.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KDTree/_CKDTree.cpython-35m-arm-linux-gnueabihf.so building 'Bio.Motif._pwm' extension creating build/temp.linux-armv7l-3.5/Bio/Motif arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c Bio/Motif/_pwm.c -o build/temp.linux-armv7l-3.5/Bio/Motif/_pwm.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/Bio/Motif/_pwm.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif/_pwm.cpython-35m-arm-linux-gnueabihf.so building 'Bio.motifs._pwm' extension creating build/temp.linux-armv7l-3.5/Bio/motifs arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c Bio/motifs/_pwm.c -o build/temp.linux-armv7l-3.5/Bio/motifs/_pwm.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/Bio/motifs/_pwm.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/_pwm.cpython-35m-arm-linux-gnueabihf.so debian/rules override_dh_auto_test make[1]: Entering directory '/«BUILDDIR»/python-biopython-1.65+dfsg' mkdir -p Tests_avoid for avoid in PAML_tools EmbossPhylipNew MSAProbs_tool NACCESS_tool PopGen_DFDist PopGen_FDist PopGen_GenePop PopGen_GenePop_EasyController PopGen_SimCoal XXmotif_tool BWA_tool raxml_tool BioSQL_MySQLdb BioSQL_psycopg2 GenomeDiagram Fasttree_tool Mafft_tool Tutorial ColorSpiral trie samtools_tool \ ; do \ mv Tests/test_${avoid}.py Tests_avoid ; \ done # For the doc package we need a clean testsuite without all the remaining files. So keep a clean copy here mkdir -p debian/tmp_tests cp -a Tests debian/tmp_tests # remove duplicated file rm -f debian/tmp_tests/Tests/Quality/example.fastq.gz # We also keep the tests we need to avoid for later inspection cp -a Tests_avoid debian/tmp_tests # in the Debian package dialign it is not needed to set DIALIGN2_DIR but the test is verifying this dir # to run the EMBOSS test test_Emboss also requires to have the environment variable EMBOSS_ROOT set LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \ --test-args='set -e; \ mkdir -p {build_dir}/home; \ mkdir -p {build_dir}/Doc/examples; \ cp -a Doc/Tutorial.tex {build_dir}/Doc; \ cp -a Doc/examples/nmr {build_dir}/Doc/examples; \ cp -a Tests {build_dir}; \ cd {build_dir}/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline' pybuild --test -i python{version} -p 2.7 --test --system=custom "--test-args=set -e; \\\ mkdir -p {build_dir}/home; \\\ mkdir -p {build_dir}/Doc/examples; \\\ cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\ cp -a Doc/examples/nmr {build_dir}/Doc/examples; \\\ cp -a Tests {build_dir}; \\\ cd {build_dir}/Tests; \\\ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline" --dir . I: pybuild base:170: set -e; \ mkdir -p /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/home; \ mkdir -p /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Doc/examples; \ cp -a Doc/Tutorial.tex /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Doc; \ cp -a Doc/examples/nmr /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Doc/examples; \ cp -a Tests /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build; \ cd /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/home python2.7 run_tests.py --offline test_Ace ... ok test_AlignIO ... ok test_AlignIO_ClustalIO ... ok test_AlignIO_EmbossIO ... ok test_AlignIO_FastaIO ... ok test_AlignIO_PhylipIO ... ok test_AlignIO_convert ... ok test_Application ... ok test_BioSQL_mysql_connector ... skipping. Install mysql.connector if you want to use mysql with BioSQL test_BioSQL_sqlite3 ... ok test_CAPS ... ok test_CelFile ... ok test_Chi2 ... ok test_ClustalOmega_tool ... ok test_Clustalw_tool ... ok test_Cluster ... ok test_CodonTable ... ok test_CodonUsage ... ok test_Compass ... ok test_Consensus ... ok test_Crystal ... ok test_DSSP_tool ... ok test_Dialign_tool ... ok test_DocSQL ... ok test_Emboss ... ok test_EmbossPrimer ... ok test_Entrez ... ok test_Entrez_online ... skipping. internet not available test_Enzyme ... ok test_FSSP ... ok test_File ... ok test_GACrossover ... ok test_GAMutation ... ok test_GAOrganism ... ok test_GAQueens ... ok test_GARepair ... ok test_GASelection ... ok test_GenBank ... ok test_GenBank_unittest ... ok test_GraphicsBitmaps ... ok test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_KDTree ... ok test_KEGG ... ok test_KEGG_online ... skipping. internet not available test_KGML_graphics ... ok test_KGML_nographics ... ok test_KeyWList ... ok test_Location ... ok test_LogisticRegression ... ok test_MMCIF ... ok test_MarkovModel ... ok test_Medline ... ok test_Motif ... ok test_Muscle_tool ... ok test_NCBITextParser ... ok test_NCBIXML ... ok test_NCBI_BLAST_tools ... ok test_NCBI_qblast ... skipping. internet not available test_NNExclusiveOr ... ok test_NNGene ... ok test_NNGeneral ... ok test_Nexus ... ok test_PAML_baseml ... ok test_PAML_codeml ... ok test_PAML_yn00 ... ok test_PDB ... ok test_PDB_KDTree ... ok test_ParserSupport ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_CDAO ... ok test_Phylo_NeXML ... ok test_Phylo_depend ... ok test_PopGen_FDist_nodepend ... ok test_PopGen_FastSimCoal ... skipping. Install fastsimcoal if you want to use Bio.PopGen.SimCoal.Controller.FastSimCoalController. test_PopGen_GenePop_nodepend ... ok test_PopGen_SimCoal_nodepend ... ok test_Prank_tool ... ok test_Probcons_tool ... ok test_ProtParam ... ok test_Restriction ... ok test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SCOP_online ... skipping. internet not available test_SVDSuperimposer ... ok test_SearchIO_blast_tab ... ok test_SearchIO_blast_tab_index ... ok test_SearchIO_blast_text ... ok test_SearchIO_blast_xml ... ok test_SearchIO_blast_xml_index ... ok test_SearchIO_blat_psl ... ok test_SearchIO_blat_psl_index ... ok test_SearchIO_exonerate ... ok test_SearchIO_exonerate_text_index ... ok test_SearchIO_exonerate_vulgar_index ... ok test_SearchIO_fasta_m10 ... ok test_SearchIO_fasta_m10_index ... ok test_SearchIO_hmmer2_text ... ok test_SearchIO_hmmer2_text_index ... ok test_SearchIO_hmmer3_domtab ... ok test_SearchIO_hmmer3_domtab_index ... ok test_SearchIO_hmmer3_tab ... ok test_SearchIO_hmmer3_tab_index ... ok test_SearchIO_hmmer3_text ... ok test_SearchIO_hmmer3_text_index ... ok test_SearchIO_model ... ok test_SearchIO_write ... ok test_SeqIO ... ok test_SeqIO_AbiIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_Insdc ... ok test_SeqIO_PdbIO ... ok test_SeqIO_QualityIO ... ok test_SeqIO_SeqXML ... ok test_SeqIO_convert ... ok test_SeqIO_features ... ok test_SeqIO_index ... ok test_SeqIO_online ... skipping. internet not available test_SeqIO_write ... ok test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SffIO ... ok test_SubsMat ... ok test_SwissProt ... ok test_TCoffee_tool ... ok test_TogoWS ... skipping. internet not available test_TreeConstruction ... ok test_UniGene ... ok test_Uniprot ... ok test_Wise ... ok test_align ... ok test_bgzf ... ok test_codonalign ... ok test_geo ... ok test_kNN ... ok test_lowess ... ok test_motifs ... ok test_pairwise2 ... ok test_phyml_tool ... ok test_prodoc ... ok test_prosite1 ... ok test_prosite2 ... ok test_psw ... ok test_py3k ... ok test_seq ... ok test_translate ... ok Bio.Align docstring test ... ok Bio.Align.Generic docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Generic.py:55: BiopythonDeprecationWarning: With the introduction of the MultipleSeqAlignment class in Bio.Align, this base class is deprecated and is likely to be removed in a future release of Biopython. warnings.warn("With the introduction of the MultipleSeqAlignment class in Bio.Align, this base class is deprecated and is likely to be removed in a future release of Biopython.", Bio.BiopythonDeprecationWarning) ok Bio.Align.Applications._Clustalw docstring test ... ok Bio.Align.Applications._ClustalOmega docstring test ... ok Bio.Align.Applications._MSAProbs docstring test ... ok Bio.Align.Applications._Mafft docstring test ... ok Bio.Align.Applications._Muscle docstring test ... ok Bio.Align.Applications._Probcons docstring test ... ok Bio.Align.Applications._Prank docstring test ... ok Bio.Align.Applications._TCoffee docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Alphabet docstring test ... ok Bio.Application docstring test ... ok Bio.bgzf docstring test ... ok Bio.codonalign docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.GenBank docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.NMR.xpktools docstring test ... ok Bio.Motif docstring test ... ok Bio.motifs docstring test ... ok Bio.motifs.applications._alignace docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/applications/_alignace.py:54: BiopythonDeprecationWarning: The AlignACE application wrapper is deprecated and is likely to be removed in a future release of Biopython, since an up to date version of the AlignACE software cannot be obtained anymore. If you have a copy of AlignACE 4, please consider contacting the Biopython developers. developers.""", BiopythonDeprecationWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/applications/_alignace.py:122: BiopythonDeprecationWarning: The CompareACE application wrapper is deprecated and is likely to be removed in a future release of Biopython, since an up to date version of the AlignACE software cannot be obtained anymore. If you have a copy of AlignACE 4, please consider contacting the Biopython developers. developers.""", BiopythonDeprecationWarning) ok Bio.motifs.applications._xxmotif docstring test ... ok Bio.pairwise2 docstring test ... ok Bio.Phylo.Applications._Raxml docstring test ... ok Bio.SearchIO docstring test ... ok Bio.SearchIO._model docstring test ... ok Bio.SearchIO._model.query docstring test ... ok Bio.SearchIO._model.hit docstring test ... ok Bio.SearchIO._model.hsp docstring test ... ok Bio.SearchIO.BlastIO docstring test ... ok Bio.SearchIO.HmmerIO docstring test ... ok Bio.SearchIO.FastaIO docstring test ... ok Bio.SearchIO.BlatIO docstring test ... ok Bio.SearchIO.ExonerateIO docstring test ... ok Bio.Seq docstring test ... ok Bio.SeqIO docstring test ... ok Bio.SeqIO.FastaIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqFeature docstring test ... ok Bio.SeqRecord docstring test ... ok Bio.SeqUtils docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils/__init__.py:560: BiopythonDeprecationWarning: The quick_FASTA_reader has been deprecated and will be removed in a future release of Biopython. Please try function SimpleFastaParser from Bio.SeqIO.FastaIO instead. "instead.", BiopythonDeprecationWarning) ok Bio.SeqUtils.MeltingTemp docstring test ... ok Bio.Sequencing.Applications._Novoalign docstring test ... ok Bio.Sequencing.Applications._bwa docstring test ... ok Bio.Sequencing.Applications._samtools docstring test ... ok Bio.Wise docstring test ... ok Bio.Wise.psw docstring test ... ok Bio.Affy.CelFile docstring test ... ok Bio.Statistics.lowess docstring test ... ok Bio.PDB.Polypeptide docstring test ... ok Bio.PDB.Selection docstring test ... ok ---------------------------------------------------------------------- Ran 217 tests in 459.014 seconds Skipping any tests requiring internet access Python version: 2.7.10 (default, Sep 13 2015, 20:30:50) [GCC 5.2.1 20150911] Operating system: posix linux2 pybuild --test -i python{version} -p "3.4 3.5" --test --system=custom "--test-args=set -e; \\\ mkdir -p {build_dir}/home; \\\ mkdir -p {build_dir}/Doc/examples; \\\ cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\ cp -a Doc/examples/nmr {build_dir}/Doc/examples; \\\ cp -a Tests {build_dir}; \\\ cd {build_dir}/Tests; \\\ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline" --dir . I: pybuild base:170: set -e; \ mkdir -p /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/home; \ mkdir -p /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Doc/examples; \ cp -a Doc/Tutorial.tex /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Doc; \ cp -a Doc/examples/nmr /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Doc/examples; \ cp -a Tests /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build; \ cd /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/home python3.4 run_tests.py --offline test_Ace ... ok test_AlignIO ... ok test_AlignIO_ClustalIO ... ok test_AlignIO_EmbossIO ... ok test_AlignIO_FastaIO ... ok test_AlignIO_PhylipIO ... ok test_AlignIO_convert ... ok test_Application ... ok test_BioSQL_mysql_connector ... skipping. Install mysql.connector if you want to use mysql with BioSQL test_BioSQL_sqlite3 ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/BioSQL/Loader.py:810: BiopythonWarning: order location operators are not fully supported % feature.location_operator, BiopythonWarning) ok test_CAPS ... ok test_CelFile ... ok test_Chi2 ... ok test_ClustalOmega_tool ... ok test_Clustalw_tool ... ok test_Cluster ... ok test_CodonTable ... ok test_CodonUsage ... ok test_Compass ... ok test_Consensus ... ok test_Crystal ... ok test_DSSP_tool ... ok test_Dialign_tool ... ok test_DocSQL ... skipping. Install MySQLdb if you want to use Bio.DocSQL. test_Emboss ... ok test_EmbossPrimer ... ok test_Entrez ... ok test_Entrez_online ... skipping. internet not available test_Enzyme ... ok test_FSSP ... ok test_File ... ok test_GACrossover ... ok test_GAMutation ... ok test_GAOrganism ... ok test_GAQueens ... ok test_GARepair ... ok test_GASelection ... ok test_GenBank ... ok test_GenBank_unittest ... ok test_GraphicsBitmaps ... ok test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_KDTree ... ok test_KEGG ... ok test_KEGG_online ... skipping. internet not available test_KGML_graphics ... ok test_KGML_nographics ... ok test_KeyWList ... ok test_Location ... ok test_LogisticRegression ... ok test_MMCIF ... ok test_MarkovModel ... ok test_Medline ... ok test_Motif ... ok test_Muscle_tool ... ok test_NCBITextParser ... ok test_NCBIXML ... ok test_NCBI_BLAST_tools ... ok test_NCBI_qblast ... skipping. internet not available test_NNExclusiveOr ... ok test_NNGene ... ok test_NNGeneral ... ok test_Nexus ... ok test_PAML_baseml ... ok test_PAML_codeml ... ok test_PAML_yn00 ... ok test_PDB ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) ok test_PDB_KDTree ... ok test_ParserSupport ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_CDAO ... ok test_Phylo_NeXML ... ok test_Phylo_depend ... ok test_PopGen_FDist_nodepend ... ok test_PopGen_FastSimCoal ... skipping. Install fastsimcoal if you want to use Bio.PopGen.SimCoal.Controller.FastSimCoalController. test_PopGen_GenePop_nodepend ... ok test_PopGen_SimCoal_nodepend ... ok test_Prank_tool ... ok test_Probcons_tool ... ok test_ProtParam ... ok test_Restriction ... ok test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SCOP_online ... skipping. internet not available test_SVDSuperimposer ... ok test_SearchIO_blast_tab ... ok test_SearchIO_blast_tab_index ... ok test_SearchIO_blast_text ... ok test_SearchIO_blast_xml ... ok test_SearchIO_blast_xml_index ... ok test_SearchIO_blat_psl ... ok test_SearchIO_blat_psl_index ... ok test_SearchIO_exonerate ... ok test_SearchIO_exonerate_text_index ... ok test_SearchIO_exonerate_vulgar_index ... ok test_SearchIO_fasta_m10 ... ok test_SearchIO_fasta_m10_index ... ok test_SearchIO_hmmer2_text ... ok test_SearchIO_hmmer2_text_index ... ok test_SearchIO_hmmer3_domtab ... ok test_SearchIO_hmmer3_domtab_index ... ok test_SearchIO_hmmer3_tab ... ok test_SearchIO_hmmer3_tab_index ... ok test_SearchIO_hmmer3_text ... ok test_SearchIO_hmmer3_text_index ... ok test_SearchIO_model ... ok test_SearchIO_write ... ok test_SeqIO ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GenBank/__init__.py:1017: BiopythonParserWarning: Dropping bond qualifier in feature location warnings.warn("Dropping bond qualifier in feature location", BiopythonParserWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO/InsdcIO.py:438: BiopythonWarning: Annotation 'flavin-adenine-dinucleotide-dependent-d-erythronate-4-phosphate-dehydrogena' too long for '' line BiopythonWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO/QualityIO.py:699: BiopythonWarning: Data loss - max PHRED quality 62 in Illumina FASTQ BiopythonWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO/QualityIO.py:793: BiopythonWarning: Data loss - max Solexa quality 62 in Solexa FASTQ BiopythonWarning) ok test_SeqIO_AbiIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_Insdc ... ok test_SeqIO_PdbIO ... ok test_SeqIO_QualityIO ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO/QualityIO.py:793: BiopythonWarning: Data loss - max Solexa quality 62 in Solexa FASTQ BiopythonWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO/QualityIO.py:699: BiopythonWarning: Data loss - max PHRED quality 62 in Illumina FASTQ BiopythonWarning) ok test_SeqIO_SeqXML ... ok test_SeqIO_convert ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO/QualityIO.py:699: BiopythonWarning: Data loss - max PHRED quality 62 in Illumina FASTQ BiopythonWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO/QualityIO.py:793: BiopythonWarning: Data loss - max Solexa quality 62 in Solexa FASTQ BiopythonWarning) ok test_SeqIO_features ... ok test_SeqIO_index ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO/_index.py:111: BiopythonParserWarning: Could not parse the SFF index: Unknown magic number b'.diy' in SFF index header: b'.diy1.00' BiopythonParserWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO/_index.py:111: BiopythonParserWarning: Could not parse the SFF index: Unknown magic number b'.diy' in SFF index header: b'.diy1.00' BiopythonParserWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO/_index.py:111: BiopythonParserWarning: Could not parse the SFF index: Unknown magic number b'.diy' in SFF index header: b'.diy1.00' BiopythonParserWarning) ok test_SeqIO_online ... skipping. internet not available test_SeqIO_write ... ok test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SffIO ... ok test_SubsMat ... ok test_SwissProt ... ok test_TCoffee_tool ... ok test_TogoWS ... skipping. internet not available test_TreeConstruction ... ok test_UniGene ... ok test_Uniprot ... ok test_Wise ... ok test_align ... ok test_bgzf ... ok test_codonalign ... ok test_geo ... ok test_kNN ... ok test_lowess ... ok test_motifs ... ok test_pairwise2 ... ok test_phyml_tool ... ok test_prodoc ... ok test_prosite1 ... ok test_prosite2 ... ok test_psw ... ok test_py3k ... ok test_seq ... ok test_translate ... ok Bio.Align docstring test ... ok Bio.Align.Generic docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Generic.py:55: BiopythonDeprecationWarning: With the introduction of the MultipleSeqAlignment class in Bio.Align, this base class is deprecated and is likely to be removed in a future release of Biopython. warnings.warn("With the introduction of the MultipleSeqAlignment class in Bio.Align, this base class is deprecated and is likely to be removed in a future release of Biopython.", Bio.BiopythonDeprecationWarning) ok Bio.Align.Applications._Clustalw docstring test ... ok Bio.Align.Applications._ClustalOmega docstring test ... ok Bio.Align.Applications._MSAProbs docstring test ... ok Bio.Align.Applications._Mafft docstring test ... ok Bio.Align.Applications._Muscle docstring test ... ok Bio.Align.Applications._Probcons docstring test ... ok Bio.Align.Applications._Prank docstring test ... ok Bio.Align.Applications._TCoffee docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Alphabet docstring test ... ok Bio.Application docstring test ... ok Bio.bgzf docstring test ... ok Bio.codonalign docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.GenBank docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.NMR.xpktools docstring test ... ok Bio.Motif docstring test ... ok Bio.motifs docstring test ... ok Bio.motifs.applications._alignace docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs/applications/_alignace.py:54: BiopythonDeprecationWarning: The AlignACE application wrapper is deprecated and is likely to be removed in a future release of Biopython, since an up to date version of the AlignACE software cannot be obtained anymore. If you have a copy of AlignACE 4, please consider contacting the Biopython developers. developers.""", BiopythonDeprecationWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs/applications/_alignace.py:122: BiopythonDeprecationWarning: The CompareACE application wrapper is deprecated and is likely to be removed in a future release of Biopython, since an up to date version of the AlignACE software cannot be obtained anymore. If you have a copy of AlignACE 4, please consider contacting the Biopython developers. developers.""", BiopythonDeprecationWarning) ok Bio.motifs.applications._xxmotif docstring test ... ok Bio.pairwise2 docstring test ... ok Bio.Phylo.Applications._Raxml docstring test ... ok Bio.SearchIO docstring test ... ok Bio.SearchIO._model docstring test ... ok Bio.SearchIO._model.query docstring test ... ok Bio.SearchIO._model.hit docstring test ... ok Bio.SearchIO._model.hsp docstring test ... ok Bio.SearchIO.BlastIO docstring test ... ok Bio.SearchIO.HmmerIO docstring test ... ok Bio.SearchIO.FastaIO docstring test ... ok Bio.SearchIO.BlatIO docstring test ... ok Bio.SearchIO.ExonerateIO docstring test ... ok Bio.SeqIO docstring test ... ok Bio.SeqIO.FastaIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqFeature docstring test ... ok Bio.SeqRecord docstring test ... ok Bio.SeqUtils docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqUtils/__init__.py:560: BiopythonDeprecationWarning: The quick_FASTA_reader has been deprecated and will be removed in a future release of Biopython. Please try function SimpleFastaParser from Bio.SeqIO.FastaIO instead. "instead.", BiopythonDeprecationWarning) ok Bio.SeqUtils.MeltingTemp docstring test ... ok Bio.Sequencing.Applications._Novoalign docstring test ... ok Bio.Sequencing.Applications._bwa docstring test ... ok Bio.Sequencing.Applications._samtools docstring test ... ok Bio.Wise docstring test ... ok Bio.Wise.psw docstring test ... ok Bio.Affy.CelFile docstring test ... ok Bio.Statistics.lowess docstring test ... ok Bio.PDB.Polypeptide docstring test ... ok Bio.PDB.Selection docstring test ... ok ---------------------------------------------------------------------- Ran 216 tests in 476.250 seconds Skipping any tests requiring internet access Python version: 3.4.3+ (default, Sep 23 2015, 17:53:22) [GCC 5.2.1 20150922] Operating system: posix linux I: pybuild base:170: set -e; \ mkdir -p /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/home; \ mkdir -p /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Doc/examples; \ cp -a Doc/Tutorial.tex /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Doc; \ cp -a Doc/examples/nmr /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Doc/examples; \ cp -a Tests /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build; \ cd /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/home python3.5 run_tests.py --offline test_Ace ... ok test_AlignIO ... ok test_AlignIO_ClustalIO ... ok test_AlignIO_EmbossIO ... ok test_AlignIO_FastaIO ... ok test_AlignIO_PhylipIO ... ok test_AlignIO_convert ... ok test_Application ... ok test_BioSQL_mysql_connector ... skipping. Install mysql.connector if you want to use mysql with BioSQL test_BioSQL_sqlite3 ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/BioSQL/Loader.py:810: BiopythonWarning: order location operators are not fully supported % feature.location_operator, BiopythonWarning) ok test_CAPS ... ok test_CelFile ... ok test_Chi2 ... ok test_ClustalOmega_tool ... ok test_Clustalw_tool ... ok test_Cluster ... ok test_CodonTable ... ok test_CodonUsage ... ok test_Compass ... ok test_Consensus ... ok test_Crystal ... ok test_DSSP_tool ... ok test_Dialign_tool ... ok test_DocSQL ... FAIL test_Emboss ... ok test_EmbossPrimer ... ok test_Entrez ... ok test_Entrez_online ... skipping. internet not available test_Enzyme ... ok test_FSSP ... ok test_File ... ok test_GACrossover ... ok test_GAMutation ... ok test_GAOrganism ... ok test_GAQueens ... ok test_GARepair ... ok test_GASelection ... ok test_GenBank ... ok test_GenBank_unittest ... ok test_GraphicsBitmaps ... ok test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_KDTree ... ok test_KEGG ... ok test_KEGG_online ... skipping. internet not available test_KGML_graphics ... ok test_KGML_nographics ... ok test_KeyWList ... ok test_Location ... ok test_LogisticRegression ... ok test_MMCIF ... ok test_MarkovModel ... ok test_Medline ... ok test_Motif ... ok test_Muscle_tool ... ok test_NCBITextParser ... ok test_NCBIXML ... ok test_NCBI_BLAST_tools ... ok test_NCBI_qblast ... skipping. internet not available test_NNExclusiveOr ... ok test_NNGene ... ok test_NNGeneral ... ok test_Nexus ... ok test_PAML_baseml ... ok test_PAML_codeml ... ok test_PAML_yn00 ... ok test_PDB ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) ok test_PDB_KDTree ... ok test_ParserSupport ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_CDAO ... ok test_Phylo_NeXML ... ok test_Phylo_depend ... ok test_PopGen_FDist_nodepend ... ok test_PopGen_FastSimCoal ... skipping. Install fastsimcoal if you want to use Bio.PopGen.SimCoal.Controller.FastSimCoalController. test_PopGen_GenePop_nodepend ... ok test_PopGen_SimCoal_nodepend ... ok test_Prank_tool ... ok test_Probcons_tool ... ok test_ProtParam ... ok test_Restriction ... ok test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SCOP_online ... skipping. internet not available test_SVDSuperimposer ... ok test_SearchIO_blast_tab ... ok test_SearchIO_blast_tab_index ... ok test_SearchIO_blast_text ... ok test_SearchIO_blast_xml ... ok test_SearchIO_blast_xml_index ... ok test_SearchIO_blat_psl ... ok test_SearchIO_blat_psl_index ... ok test_SearchIO_exonerate ... ok test_SearchIO_exonerate_text_index ... ok test_SearchIO_exonerate_vulgar_index ... ok test_SearchIO_fasta_m10 ... ok test_SearchIO_fasta_m10_index ... ok test_SearchIO_hmmer2_text ... ok test_SearchIO_hmmer2_text_index ... ok test_SearchIO_hmmer3_domtab ... ok test_SearchIO_hmmer3_domtab_index ... ok test_SearchIO_hmmer3_tab ... ok test_SearchIO_hmmer3_tab_index ... ok test_SearchIO_hmmer3_text ... ok test_SearchIO_hmmer3_text_index ... ok test_SearchIO_model ... ok test_SearchIO_write ... ok test_SeqIO ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GenBank/__init__.py:1017: BiopythonParserWarning: Dropping bond qualifier in feature location warnings.warn("Dropping bond qualifier in feature location", BiopythonParserWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/InsdcIO.py:438: BiopythonWarning: Annotation 'flavin-adenine-dinucleotide-dependent-d-erythronate-4-phosphate-dehydrogena' too long for '' line BiopythonWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/QualityIO.py:699: BiopythonWarning: Data loss - max PHRED quality 62 in Illumina FASTQ BiopythonWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/QualityIO.py:793: BiopythonWarning: Data loss - max Solexa quality 62 in Solexa FASTQ BiopythonWarning) ok test_SeqIO_AbiIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_Insdc ... ok test_SeqIO_PdbIO ... ok test_SeqIO_QualityIO ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/QualityIO.py:793: BiopythonWarning: Data loss - max Solexa quality 62 in Solexa FASTQ BiopythonWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/QualityIO.py:699: BiopythonWarning: Data loss - max PHRED quality 62 in Illumina FASTQ BiopythonWarning) ok test_SeqIO_SeqXML ... ok test_SeqIO_convert ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/QualityIO.py:699: BiopythonWarning: Data loss - max PHRED quality 62 in Illumina FASTQ BiopythonWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/QualityIO.py:793: BiopythonWarning: Data loss - max Solexa quality 62 in Solexa FASTQ BiopythonWarning) ok test_SeqIO_features ... ok test_SeqIO_index ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/_index.py:111: BiopythonParserWarning: Could not parse the SFF index: Unknown magic number b'.diy' in SFF index header: b'.diy1.00' BiopythonParserWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/_index.py:111: BiopythonParserWarning: Could not parse the SFF index: Unknown magic number b'.diy' in SFF index header: b'.diy1.00' BiopythonParserWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/_index.py:111: BiopythonParserWarning: Could not parse the SFF index: Unknown magic number b'.diy' in SFF index header: b'.diy1.00' BiopythonParserWarning) ok test_SeqIO_online ... skipping. internet not available test_SeqIO_write ... ok test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SffIO ... ok test_SubsMat ... ok test_SwissProt ... ok test_TCoffee_tool ... ok test_TogoWS ... skipping. internet not available test_TreeConstruction ... ok test_UniGene ... ok test_Uniprot ... ok test_Wise ... ok test_align ... ok test_bgzf ... ok test_codonalign ... ok test_geo ... ok test_kNN ... ok test_lowess ... ok test_motifs ... ok test_pairwise2 ... ok test_phyml_tool ... ok test_prodoc ... ok test_prosite1 ... ok test_prosite2 ... ok test_psw ... ok test_py3k ... ok test_seq ... ok test_translate ... ok Bio.Align docstring test ... ok Bio.Align.Generic docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Generic.py:55: BiopythonDeprecationWarning: With the introduction of the MultipleSeqAlignment class in Bio.Align, this base class is deprecated and is likely to be removed in a future release of Biopython. warnings.warn("With the introduction of the MultipleSeqAlignment class in Bio.Align, this base class is deprecated and is likely to be removed in a future release of Biopython.", Bio.BiopythonDeprecationWarning) ok Bio.Align.Applications._Clustalw docstring test ... ok Bio.Align.Applications._ClustalOmega docstring test ... ok Bio.Align.Applications._MSAProbs docstring test ... ok Bio.Align.Applications._Mafft docstring test ... ok Bio.Align.Applications._Muscle docstring test ... ok Bio.Align.Applications._Probcons docstring test ... ok Bio.Align.Applications._Prank docstring test ... ok Bio.Align.Applications._TCoffee docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Alphabet docstring test ... ok Bio.Application docstring test ... ok Bio.bgzf docstring test ... ok Bio.codonalign docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.GenBank docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.NMR.xpktools docstring test ... ok Bio.Motif docstring test ... ok Bio.motifs docstring test ... ok Bio.motifs.applications._alignace docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/applications/_alignace.py:54: BiopythonDeprecationWarning: The AlignACE application wrapper is deprecated and is likely to be removed in a future release of Biopython, since an up to date version of the AlignACE software cannot be obtained anymore. If you have a copy of AlignACE 4, please consider contacting the Biopython developers. developers.""", BiopythonDeprecationWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/applications/_alignace.py:122: BiopythonDeprecationWarning: The CompareACE application wrapper is deprecated and is likely to be removed in a future release of Biopython, since an up to date version of the AlignACE software cannot be obtained anymore. If you have a copy of AlignACE 4, please consider contacting the Biopython developers. developers.""", BiopythonDeprecationWarning) ok Bio.motifs.applications._xxmotif docstring test ... ok Bio.pairwise2 docstring test ... ok Bio.Phylo.Applications._Raxml docstring test ... ok Bio.SearchIO docstring test ... ok Bio.SearchIO._model docstring test ... ok Bio.SearchIO._model.query docstring test ... ok Bio.SearchIO._model.hit docstring test ... ok Bio.SearchIO._model.hsp docstring test ... ok Bio.SearchIO.BlastIO docstring test ... ok Bio.SearchIO.HmmerIO docstring test ... ok Bio.SearchIO.FastaIO docstring test ... ok Bio.SearchIO.BlatIO docstring test ... ok Bio.SearchIO.ExonerateIO docstring test ... ok Bio.SeqIO docstring test ... ok Bio.SeqIO.FastaIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqFeature docstring test ... ok Bio.SeqRecord docstring test ... ok Bio.SeqUtils docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils/__init__.py:560: BiopythonDeprecationWarning: The quick_FASTA_reader has been deprecated and will be removed in a future release of Biopython. Please try function SimpleFastaParser from Bio.SeqIO.FastaIO instead. "instead.", BiopythonDeprecationWarning) ok Bio.SeqUtils.MeltingTemp docstring test ... ok Bio.Sequencing.Applications._Novoalign docstring test ... ok Bio.Sequencing.Applications._bwa docstring test ... ok Bio.Sequencing.Applications._samtools docstring test ... ok Bio.Wise docstring test ... ok Bio.Wise.psw docstring test ... ok Bio.Affy.CelFile docstring test ... ok Bio.Statistics.lowess docstring test ... ok Bio.PDB.Polypeptide docstring test ... ok Bio.PDB.Selection docstring test ... ok ====================================================================== ERROR: test_DocSQL (unittest.loader._FailedTest) ---------------------------------------------------------------------- ImportError: Failed to import test module: test_DocSQL Traceback (most recent call last): File "/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/DocSQL.py", line 33, in import MySQLdb ImportError: No module named 'MySQLdb' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.5/unittest/loader.py", line 153, in loadTestsFromName module = __import__(module_name) File "/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Tests/test_DocSQL.py", line 7, in import Bio.DocSQL File "/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/DocSQL.py", line 35, in raise MissingPythonDependencyError("Install MySQLdb if you want to use " Bio.MissingPythonDependencyError: Install MySQLdb if you want to use Bio.DocSQL. ---------------------------------------------------------------------- Ran 216 tests in 495.370 seconds FAILED (failures = 1) Skipping any tests requiring internet access Python version: 3.5.0+ (default, Sep 23 2015, 23:01:34) [GCC 5.2.1 20150922] Operating system: posix linux E: pybuild pybuild:262: test: plugin custom failed with: exit code=1: set -e; \ mkdir -p /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/home; \ mkdir -p /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Doc/examples; \ cp -a Doc/Tutorial.tex /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Doc; \ cp -a Doc/examples/nmr /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Doc/examples; \ cp -a Tests /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build; \ cd /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/home python3.5 run_tests.py --offline dh_auto_test: pybuild --test -i python{version} -p 3.4 3.5 --test --system=custom --test-args=set -e; \ mkdir -p {build_dir}/home; \ mkdir -p {build_dir}/Doc/examples; \ cp -a Doc/Tutorial.tex {build_dir}/Doc; \ cp -a Doc/examples/nmr {build_dir}/Doc/examples; \ cp -a Tests {build_dir}; \ cd {build_dir}/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline --dir . returned exit code 13 make[1]: *** [override_dh_auto_test] Error 25 debian/rules:67: recipe for target 'override_dh_auto_test' failed make[1]: Leaving directory '/«BUILDDIR»/python-biopython-1.65+dfsg' make: *** [build-arch] Error 2 debian/rules:49: recipe for target 'build-arch' failed dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20151006-0939 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: armhf Build-Space: 230400 Build-Time: 1517 Distribution: wily Fail-Stage: build Host Architecture: armhf Install-Time: 343 Job: python-biopython_1.65+dfsg-1.dsc Machine Architecture: armhf Package: python-biopython Package-Time: 1868 Source-Version: 1.65+dfsg-1 Space: 230400 Status: attempted Version: 1.65+dfsg-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20151006-0939 Build needed 00:31:08, 230400k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-8056759'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-8056759/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-8056759'] Unmounting chroot for build PACKAGEBUILD-8056759... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-8056759'] Removing build PACKAGEBUILD-8056759